Ggra6078.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6078.t1
Unique NameGgra6078.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:489073..489693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6078Ggra6078Gracilaria gracilis GNS1m malegenetig00000045_pilon 489073..489693 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6078.t1.stop1Ggra6078.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 489073..489075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6078.t1.CDS1Ggra6078.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 489073..489693 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6078.t1.exon1Ggra6078.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 489073..489693 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6078.t1.start1Ggra6078.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 489691..489693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6078.t1Ggra6078.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 489073..489693 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6078.t1 ID=Ggra6078.t1|Name=Ggra6078.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp
MPFVSSFTGTSKQGATGAYLSRRICVRASANDNKDDDDSQHFPPLGPRFN
HSFHHFDGSKPLLPPWRPASLEDEFGYTASRIESRERVKPSSRKIVKVEK
EGFATMFAEVVQELDDGKGRIWLRPLLLSSHLKDTAVDLRGSTDVVLDKK
CVCEVDSETRLRLSINLIATEDDVFGRVLSDEHWDEVGTNAVLAFMKRLS
EGNDPC*
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spliced messenger RNA

>Ggra6078.t1 ID=Ggra6078.t1|Name=Ggra6078.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000045_pilon:489073..489693- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTTGTGAGCTCGTTTACAGGCACCTCCAAGCAAGGCGCGACCGG
CGCTTATTTGAGCCGCAGAATATGTGTGCGTGCGTCTGCGAACGATAATA
AGGACGATGACGACTCTCAGCATTTCCCTCCATTGGGTCCGCGTTTCAAT
CATTCGTTTCATCACTTCGACGGCTCGAAACCGTTGCTTCCACCGTGGAG
ACCAGCGTCGCTGGAAGATGAATTCGGCTATACAGCTAGCCGAATAGAGT
CGAGAGAGCGGGTGAAACCTTCATCTCGTAAGATTGTCAAGGTAGAAAAA
GAGGGCTTTGCTACTATGTTTGCCGAGGTTGTACAGGAACTAGATGATGG
CAAGGGTAGGATATGGCTGAGGCCTTTGCTACTGAGCAGCCATTTGAAGG
ATACTGCTGTGGATTTGAGGGGTTCTACCGACGTGGTGCTTGATAAGAAA
TGTGTGTGTGAGGTTGATAGTGAGACCAGATTGAGACTTTCGATTAATTT
GATTGCTACAGAAGATGATGTCTTCGGCAGAGTTCTTTCGGACGAGCATT
GGGATGAAGTGGGTACCAATGCGGTTCTGGCGTTCATGAAGAGATTGTCC
GAAGGAAACGACCCATGTTGA
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protein sequence of Ggra6078.t1

>Ggra6078.t1 ID=Ggra6078.t1|Name=Ggra6078.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MPFVSSFTGTSKQGATGAYLSRRICVRASANDNKDDDDSQHFPPLGPRFN
HSFHHFDGSKPLLPPWRPASLEDEFGYTASRIESRERVKPSSRKIVKVEK
EGFATMFAEVVQELDDGKGRIWLRPLLLSSHLKDTAVDLRGSTDVVLDKK
CVCEVDSETRLRLSINLIATEDDVFGRVLSDEHWDEVGTNAVLAFMKRLS
EGNDPC*
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mRNA from alignment at tig00000045_pilon:489073..489693-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6078.t1 ID=Ggra6078.t1|Name=Ggra6078.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000045_pilon:489073..489693- (Gracilaria gracilis GNS1m male)
ATGCCGTTTGTGAGCTCGTTTACAGGCACCTCCAAGCAAGGCGCGACCGG
CGCTTATTTGAGCCGCAGAATATGTGTGCGTGCGTCTGCGAACGATAATA
AGGACGATGACGACTCTCAGCATTTCCCTCCATTGGGTCCGCGTTTCAAT
CATTCGTTTCATCACTTCGACGGCTCGAAACCGTTGCTTCCACCGTGGAG
ACCAGCGTCGCTGGAAGATGAATTCGGCTATACAGCTAGCCGAATAGAGT
CGAGAGAGCGGGTGAAACCTTCATCTCGTAAGATTGTCAAGGTAGAAAAA
GAGGGCTTTGCTACTATGTTTGCCGAGGTTGTACAGGAACTAGATGATGG
CAAGGGTAGGATATGGCTGAGGCCTTTGCTACTGAGCAGCCATTTGAAGG
ATACTGCTGTGGATTTGAGGGGTTCTACCGACGTGGTGCTTGATAAGAAA
TGTGTGTGTGAGGTTGATAGTGAGACCAGATTGAGACTTTCGATTAATTT
GATTGCTACAGAAGATGATGTCTTCGGCAGAGTTCTTTCGGACGAGCATT
GGGATGAAGTGGGTACCAATGCGGTTCTGGCGTTCATGAAGAGATTGTCC
GAAGGAAACGACCCATGTTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:489073..489693-

>Ggra6078.t1 ID=Ggra6078.t1|Name=Ggra6078.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00000045_pilon:489073..489693- (Gracilaria gracilis GNS1m male)
ATGCCGTTTGTGAGCTCGTTTACAGGCACCTCCAAGCAAGGCGCGACCGG
CGCTTATTTGAGCCGCAGAATATGTGTGCGTGCGTCTGCGAACGATAATA
AGGACGATGACGACTCTCAGCATTTCCCTCCATTGGGTCCGCGTTTCAAT
CATTCGTTTCATCACTTCGACGGCTCGAAACCGTTGCTTCCACCGTGGAG
ACCAGCGTCGCTGGAAGATGAATTCGGCTATACAGCTAGCCGAATAGAGT
CGAGAGAGCGGGTGAAACCTTCATCTCGTAAGATTGTCAAGGTAGAAAAA
GAGGGCTTTGCTACTATGTTTGCCGAGGTTGTACAGGAACTAGATGATGG
CAAGGGTAGGATATGGCTGAGGCCTTTGCTACTGAGCAGCCATTTGAAGG
ATACTGCTGTGGATTTGAGGGGTTCTACCGACGTGGTGCTTGATAAGAAA
TGTGTGTGTGAGGTTGATAGTGAGACCAGATTGAGACTTTCGATTAATTT
GATTGCTACAGAAGATGATGTCTTCGGCAGAGTTCTTTCGGACGAGCATT
GGGATGAAGTGGGTACCAATGCGGTTCTGGCGTTCATGAAGAGATTGTCC
GAAGGAAACGACCCATGTTGA
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