Ggra6076.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6076.t1
Unique NameGgra6076.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:484968..486813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004363600.1
Preferred namexdhA
PFAMsADH_N,ADH_zinc_N
Max annot lvl33154|Opisthokonta
KEGG rclassRC00085,RC00102
KEGG koko:K00008,ko:K05351
KEGG ReactionR00875,R01896
KEGG Pathwayko00040,ko00051,ko01100,map00040,map00051,map01100
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0003939,GO:0005975,GO:0005996,GO:0005997,GO:0005999,GO:0006059,GO:0006066,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009987,GO:0016051,GO:0016052,GO:0016491,GO:0016614,GO:0016616,GO:0019318,GO:0019321,GO:0019322,GO:0019323,GO:0019400,GO:0019405,GO:0019407,GO:0019519,GO:0019527,GO:0019637,GO:0019697,GO:0019751,GO:0031320,GO:0042732,GO:0042843,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046526,GO:0050019,GO:0051160,GO:0051164,GO:0051167,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576,GO:1901615,GO:1901616
Evalue3.56e-133
EggNOG OGsCOG1063@1|root,KOG0024@2759|Eukaryota,38BYX@33154|Opisthokonta
EC1.1.1.14,1.1.1.9
DescriptionDehydrogenase
COG categoryQ
BiGG ReactioniMM904.YLR070C,iND750.YLR070C
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6076Ggra6076Gracilaria gracilis GNS1m malegenetig00000045_pilon 484968..486813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6076.t1Ggra6076.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 484968..486813 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6076.t1.stop1Ggra6076.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 484968..484970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6076.t1.CDS1Ggra6076.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 484968..486149 -
Ggra6076.t1.CDS2Ggra6076.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 486235..486813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6076.t1.exon1Ggra6076.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 484968..486149 -
Ggra6076.t1.exon2Ggra6076.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 486235..486813 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6076.t1.intron1Ggra6076.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 486150..486234 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6076.t1.start1Ggra6076.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 486811..486813 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6076.t1 ID=Ggra6076.t1|Name=Ggra6076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MAQQPMPQHMSQPMSMPTAPQDDAPEGELDPNLVKLACQNRIRNRSKRSP
EWIFFADAGMWQTVNGEESKFRIANCRYCLKADIETRIRGKIETMKNHIL
ECDKIPASQKAVYERHPARFRKRQSGANAVDPSKRLKYDGLLKANAHLNV
DGVENKAIVLHGAGDLRIEKVPIPAIPEGHVLVAMRSVGICGSDVHYWTN
GRIGDFIIDKPMILGHEGSGVVRLVGENVTNVEEGDRVAIEPGVPCSGCS
LCRGGRYNLCPHVKFAATPPVNGSLAHFIVHPARFLYRLSPMISFDEAAL
FEPLSVGIHACRRGGVTLGSTVLITGAGPIGLMCMLAAKASGASQISILD
VDTDRLQVAKELGASRAILTHSEADPKVSVEGMHADVCIEASGMDPAIKA
CVYGAKQGGVVVLVGMGRPEVALPVLEIGIREIDVRGVFRYCNTYPVALD
LVHSGKVNLKRLVTHRFKMLDALDAFEAARNRATKALKVIIDCTPQPTQP
VSSQATNVAPSIATSLPNIPNTIQTGLNTSLPTSLPSQVASVATVGSVPA
VQIAMSAAAATTVPPVPVPTPPPQPNPTIAWGDRDS*
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spliced messenger RNA

>Ggra6076.t1 ID=Ggra6076.t1|Name=Ggra6076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000045_pilon:484968..486813- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGCAACCCATGCCGCAACACATGTCCCAGCCCATGTCCATGCC
CACCGCACCCCAAGATGACGCGCCAGAGGGTGAACTCGACCCTAATCTCG
TCAAGCTTGCCTGTCAGAACCGCATTCGCAATCGCTCCAAGCGCTCGCCT
GAATGGATTTTCTTCGCCGATGCTGGCATGTGGCAGACCGTCAACGGTGA
GGAATCCAAGTTCCGCATTGCAAACTGTCGATACTGTCTCAAGGCCGACA
TTGAAACCAGAATTCGCGGTAAGATTGAGACCATGAAGAACCACATTCTT
GAGTGCGACAAGATCCCTGCCTCGCAGAAGGCTGTGTATGAACGTCACCC
GGCGCGCTTTCGCAAACGACAGTCCGGCGCCAACGCTGTGGACCCGTCTA
AACGACTCAAGTATGACGGCCTTCTTAAGGCTAACGCCCACCTTAACGTC
GACGGCGTTGAAAATAAGGCTATCGTGCTACACGGTGCTGGTGACTTGCG
CATTGAAAAAGTCCCCATTCCGGCTATTCCGGAAGGGCATGTGCTTGTCG
CCATGCGATCCGTTGGTATCTGTGGGTCGGATGTGCACTACTGGACAAAC
GGTCGCATTGGCGACTTTATAATCGACAAGCCCATGATCCTTGGCCACGA
AGGGTCCGGCGTCGTGCGCCTTGTTGGTGAGAATGTAACCAACGTCGAGG
AGGGAGATCGCGTTGCAATTGAGCCTGGCGTTCCTTGCAGTGGATGCAGT
TTGTGCAGAGGCGGTCGTTACAACCTCTGTCCCCATGTCAAGTTTGCTGC
CACCCCTCCTGTCAATGGTTCCCTGGCTCATTTTATTGTTCACCCCGCTC
GCTTTCTATACAGACTTTCCCCCATGATTTCCTTCGACGAAGCTGCCCTT
TTCGAACCCCTCTCCGTCGGTATTCATGCTTGTCGTCGCGGAGGTGTCAC
GCTGGGCTCTACCGTGCTTATTACCGGCGCAGGGCCAATTGGTCTTATGT
GTATGCTTGCGGCCAAGGCTTCAGGTGCCTCTCAAATATCAATTCTCGAC
GTCGATACGGATCGACTCCAAGTGGCCAAGGAGCTTGGTGCTAGCAGGGC
GATTCTGACGCACAGCGAAGCCGATCCAAAGGTTTCTGTGGAAGGGATGC
ACGCCGATGTGTGTATTGAAGCATCCGGGATGGATCCTGCGATTAAGGCT
TGCGTTTATGGTGCGAAACAAGGTGGAGTAGTCGTACTTGTGGGAATGGG
CCGGCCTGAGGTTGCTTTACCTGTGTTGGAAATTGGAATTCGCGAAATCG
ACGTCCGCGGCGTCTTCCGTTACTGCAACACGTACCCTGTAGCGCTGGAC
CTTGTCCACTCTGGAAAGGTCAACTTGAAAAGGCTTGTCACGCACCGCTT
TAAGATGCTCGATGCATTGGATGCGTTTGAAGCTGCACGAAACCGAGCGA
CCAAGGCTCTTAAGGTCATCATAGACTGCACCCCTCAACCAACACAGCCC
GTCAGCTCTCAGGCGACGAACGTTGCGCCATCTATCGCGACCTCCTTACC
AAACATCCCAAACACTATTCAAACTGGACTGAATACATCGTTACCAACAT
CTTTACCGTCTCAGGTTGCGTCGGTGGCGACGGTCGGTTCGGTTCCTGCT
GTACAAATCGCAATGTCTGCCGCTGCGGCTACGACAGTACCTCCGGTTCC
GGTTCCCACACCACCACCACAACCGAACCCTACCATAGCATGGGGTGACC
GCGATTCCTGA
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protein sequence of Ggra6076.t1

>Ggra6076.t1 ID=Ggra6076.t1|Name=Ggra6076.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MAQQPMPQHMSQPMSMPTAPQDDAPEGELDPNLVKLACQNRIRNRSKRSP
EWIFFADAGMWQTVNGEESKFRIANCRYCLKADIETRIRGKIETMKNHIL
ECDKIPASQKAVYERHPARFRKRQSGANAVDPSKRLKYDGLLKANAHLNV
DGVENKAIVLHGAGDLRIEKVPIPAIPEGHVLVAMRSVGICGSDVHYWTN
GRIGDFIIDKPMILGHEGSGVVRLVGENVTNVEEGDRVAIEPGVPCSGCS
LCRGGRYNLCPHVKFAATPPVNGSLAHFIVHPARFLYRLSPMISFDEAAL
FEPLSVGIHACRRGGVTLGSTVLITGAGPIGLMCMLAAKASGASQISILD
VDTDRLQVAKELGASRAILTHSEADPKVSVEGMHADVCIEASGMDPAIKA
CVYGAKQGGVVVLVGMGRPEVALPVLEIGIREIDVRGVFRYCNTYPVALD
LVHSGKVNLKRLVTHRFKMLDALDAFEAARNRATKALKVIIDCTPQPTQP
VSSQATNVAPSIATSLPNIPNTIQTGLNTSLPTSLPSQVASVATVGSVPA
VQIAMSAAAATTVPPVPVPTPPPQPNPTIAWGDRDS*
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mRNA from alignment at tig00000045_pilon:484968..486813-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6076.t1 ID=Ggra6076.t1|Name=Ggra6076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1846bp|location=Sequence derived from alignment at tig00000045_pilon:484968..486813- (Gracilaria gracilis GNS1m male)
ATGGCGCAGCAACCCATGCCGCAACACATGTCCCAGCCCATGTCCATGCC
CACCGCACCCCAAGATGACGCGCCAGAGGGTGAACTCGACCCTAATCTCG
TCAAGCTTGCCTGTCAGAACCGCATTCGCAATCGCTCCAAGCGCTCGCCT
GAATGGATTTTCTTCGCCGATGCTGGCATGTGGCAGACCGTCAACGGTGA
GGAATCCAAGTTCCGCATTGCAAACTGTCGATACTGTCTCAAGGCCGACA
TTGAAACCAGAATTCGCGGTAAGATTGAGACCATGAAGAACCACATTCTT
GAGTGCGACAAGATCCCTGCCTCGCAGAAGGCTGTGTATGAACGTCACCC
GGCGCGCTTTCGCAAACGACAGTCCGGCGCCAACGCTGTGGACCCGTCTA
AACGACTCAAGTATGACGGCCTTCTTAAGGCTAACGCCCACCTTAACGTC
GACGGCGTTGAAAATAAGGCTATCGTGCTACACGGTGCTGGTGACTTGCG
CATTGAAAAAGTCCCCATTCCGGCTATTCCGGAAGGGCATGTGCTTGTCG
CCATGCGATCCGTTGGTATCTGTGGGTCGGTAAGTTCTTGTTTGCTGCTT
GCTCGTTGCCCTCACCATGTCAACTCCTCAATTCTGACCGCGCATTTCAT
TTCTTGTTCTGCAGGATGTGCACTACTGGACAAACGGTCGCATTGGCGAC
TTTATAATCGACAAGCCCATGATCCTTGGCCACGAAGGGTCCGGCGTCGT
GCGCCTTGTTGGTGAGAATGTAACCAACGTCGAGGAGGGAGATCGCGTTG
CAATTGAGCCTGGCGTTCCTTGCAGTGGATGCAGTTTGTGCAGAGGCGGT
CGTTACAACCTCTGTCCCCATGTCAAGTTTGCTGCCACCCCTCCTGTCAA
TGGTTCCCTGGCTCATTTTATTGTTCACCCCGCTCGCTTTCTATACAGAC
TTTCCCCCATGATTTCCTTCGACGAAGCTGCCCTTTTCGAACCCCTCTCC
GTCGGTATTCATGCTTGTCGTCGCGGAGGTGTCACGCTGGGCTCTACCGT
GCTTATTACCGGCGCAGGGCCAATTGGTCTTATGTGTATGCTTGCGGCCA
AGGCTTCAGGTGCCTCTCAAATATCAATTCTCGACGTCGATACGGATCGA
CTCCAAGTGGCCAAGGAGCTTGGTGCTAGCAGGGCGATTCTGACGCACAG
CGAAGCCGATCCAAAGGTTTCTGTGGAAGGGATGCACGCCGATGTGTGTA
TTGAAGCATCCGGGATGGATCCTGCGATTAAGGCTTGCGTTTATGGTGCG
AAACAAGGTGGAGTAGTCGTACTTGTGGGAATGGGCCGGCCTGAGGTTGC
TTTACCTGTGTTGGAAATTGGAATTCGCGAAATCGACGTCCGCGGCGTCT
TCCGTTACTGCAACACGTACCCTGTAGCGCTGGACCTTGTCCACTCTGGA
AAGGTCAACTTGAAAAGGCTTGTCACGCACCGCTTTAAGATGCTCGATGC
ATTGGATGCGTTTGAAGCTGCACGAAACCGAGCGACCAAGGCTCTTAAGG
TCATCATAGACTGCACCCCTCAACCAACACAGCCCGTCAGCTCTCAGGCG
ACGAACGTTGCGCCATCTATCGCGACCTCCTTACCAAACATCCCAAACAC
TATTCAAACTGGACTGAATACATCGTTACCAACATCTTTACCGTCTCAGG
TTGCGTCGGTGGCGACGGTCGGTTCGGTTCCTGCTGTACAAATCGCAATG
TCTGCCGCTGCGGCTACGACAGTACCTCCGGTTCCGGTTCCCACACCACC
ACCACAACCGAACCCTACCATAGCATGGGGTGACCGCGATTCCTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:484968..486813-

>Ggra6076.t1 ID=Ggra6076.t1|Name=Ggra6076.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000045_pilon:484968..486813- (Gracilaria gracilis GNS1m male)
ATGGCGCAGCAACCCATGCCGCAACACATGTCCCAGCCCATGTCCATGCC
CACCGCACCCCAAGATGACGCGCCAGAGGGTGAACTCGACCCTAATCTCG
TCAAGCTTGCCTGTCAGAACCGCATTCGCAATCGCTCCAAGCGCTCGCCT
GAATGGATTTTCTTCGCCGATGCTGGCATGTGGCAGACCGTCAACGGTGA
GGAATCCAAGTTCCGCATTGCAAACTGTCGATACTGTCTCAAGGCCGACA
TTGAAACCAGAATTCGCGGTAAGATTGAGACCATGAAGAACCACATTCTT
GAGTGCGACAAGATCCCTGCCTCGCAGAAGGCTGTGTATGAACGTCACCC
GGCGCGCTTTCGCAAACGACAGTCCGGCGCCAACGCTGTGGACCCGTCTA
AACGACTCAAGTATGACGGCCTTCTTAAGGCTAACGCCCACCTTAACGTC
GACGGCGTTGAAAATAAGGCTATCGTGCTACACGGTGCTGGTGACTTGCG
CATTGAAAAAGTCCCCATTCCGGCTATTCCGGAAGGGCATGTGCTTGTCG
CCATGCGATCCGTTGGTATCTGTGGGTCGGATGTGCACTACTGGACAAAC
GGTCGCATTGGCGACTTTATAATCGACAAGCCCATGATCCTTGGCCACGA
AGGGTCCGGCGTCGTGCGCCTTGTTGGTGAGAATGTAACCAACGTCGAGG
AGGGAGATCGCGTTGCAATTGAGCCTGGCGTTCCTTGCAGTGGATGCAGT
TTGTGCAGAGGCGGTCGTTACAACCTCTGTCCCCATGTCAAGTTTGCTGC
CACCCCTCCTGTCAATGGTTCCCTGGCTCATTTTATTGTTCACCCCGCTC
GCTTTCTATACAGACTTTCCCCCATGATTTCCTTCGACGAAGCTGCCCTT
TTCGAACCCCTCTCCGTCGGTATTCATGCTTGTCGTCGCGGAGGTGTCAC
GCTGGGCTCTACCGTGCTTATTACCGGCGCAGGGCCAATTGGTCTTATGT
GTATGCTTGCGGCCAAGGCTTCAGGTGCCTCTCAAATATCAATTCTCGAC
GTCGATACGGATCGACTCCAAGTGGCCAAGGAGCTTGGTGCTAGCAGGGC
GATTCTGACGCACAGCGAAGCCGATCCAAAGGTTTCTGTGGAAGGGATGC
ACGCCGATGTGTGTATTGAAGCATCCGGGATGGATCCTGCGATTAAGGCT
TGCGTTTATGGTGCGAAACAAGGTGGAGTAGTCGTACTTGTGGGAATGGG
CCGGCCTGAGGTTGCTTTACCTGTGTTGGAAATTGGAATTCGCGAAATCG
ACGTCCGCGGCGTCTTCCGTTACTGCAACACGTACCCTGTAGCGCTGGAC
CTTGTCCACTCTGGAAAGGTCAACTTGAAAAGGCTTGTCACGCACCGCTT
TAAGATGCTCGATGCATTGGATGCGTTTGAAGCTGCACGAAACCGAGCGA
CCAAGGCTCTTAAGGTCATCATAGACTGCACCCCTCAACCAACACAGCCC
GTCAGCTCTCAGGCGACGAACGTTGCGCCATCTATCGCGACCTCCTTACC
AAACATCCCAAACACTATTCAAACTGGACTGAATACATCGTTACCAACAT
CTTTACCGTCTCAGGTTGCGTCGGTGGCGACGGTCGGTTCGGTTCCTGCT
GTACAAATCGCAATGTCTGCCGCTGCGGCTACGACAGTACCTCCGGTTCC
GGTTCCCACACCACCACCACAACCGAACCCTACCATAGCATGGGGTGACC
GCGATTCCTGA
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