Ggra6074.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6074.t1
Unique NameGgra6074.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:481024..481967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264951.V5FYC3
Preferred nameFPR3
PFAMsFKBP_C
Max annot lvl4751|Fungi
KEGG koko:K14826
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0016043,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033313,GO:0034622,GO:0034728,GO:0036211,GO:0040020,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:2000241,GO:2000242,GO:2001251
Evalue1.37e-25
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota,38CQE@33154|Opisthokonta,3NVTP@4751|Fungi,3QMYG@4890|Ascomycota,20G9K@147545|Eurotiomycetes,3S3A2@5042|Eurotiales
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6074Ggra6074Gracilaria gracilis GNS1m malegenetig00000045_pilon 481024..481967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6074.t1Ggra6074.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 481024..481967 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6074.t1.stop1Ggra6074.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 481024..481026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6074.t1.CDS1Ggra6074.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 481024..481806 -
Ggra6074.t1.CDS2Ggra6074.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 481884..481967 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6074.t1.exon1Ggra6074.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 481024..481806 -
Ggra6074.t1.exon2Ggra6074.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 481884..481967 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6074.t1.intron1Ggra6074.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 481807..481883 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6074.t1.start1Ggra6074.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 481965..481967 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6074.t1 ID=Ggra6074.t1|Name=Ggra6074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MSFVGVEVKPRKVVWVDASSERHVSLSNACLVKHPKKENARVILEVLKPN
SEEGPASEQKLKRVALAVLSSRSENIQLDLILTSRLGLTIAGKSAAGAVV
HVVGSEYFAEYEESEEEDMDLDGGIMGVDVEFGGSDSEGSSISDDDGDSP
SADDAEDSGNGEDADKKVVARKRSGGLPVVNHRSGLKFQDIIIGSGKKVV
QGKNVALKYTLRLENGKVVDKAEARKPFKFRLGVGECVKGFDIGVSGMRE
GGERHLIVPPDLAYGRNPPPGIPRNATLYFDVTVIKAF*
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spliced messenger RNA

>Ggra6074.t1 ID=Ggra6074.t1|Name=Ggra6074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000045_pilon:481024..481967- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTTGTTGGTGTTGAAGTCAAGCCGAGGAAAGTGGTTTGGGTAGA
TGCGTCCTCCGAAAGACATGTTTCACTCAGTAATGCATGTCTTGTGAAAC
ATCCAAAGAAAGAAAATGCTCGAGTTATCTTGGAAGTCCTGAAGCCTAAT
AGCGAAGAAGGACCTGCTTCCGAACAAAAATTGAAACGAGTTGCTCTTGC
GGTTCTGTCCTCACGGTCTGAAAACATCCAACTTGACCTAATACTTACTT
CCCGACTTGGCCTTACCATTGCTGGTAAATCTGCCGCTGGAGCTGTGGTT
CACGTTGTCGGAAGCGAATATTTTGCTGAGTACGAAGAAAGTGAGGAAGA
GGACATGGATCTTGATGGCGGAATCATGGGCGTGGACGTCGAGTTTGGTG
GGAGTGACAGTGAAGGTAGTAGTATATCTGATGATGATGGTGATTCTCCT
AGTGCGGACGATGCGGAGGACTCTGGAAATGGAGAAGACGCAGACAAGAA
AGTGGTCGCGAGAAAACGAAGTGGAGGTTTGCCTGTTGTGAATCATCGGT
CTGGACTTAAGTTTCAGGATATCATTATTGGCTCCGGGAAAAAAGTTGTG
CAAGGAAAGAATGTAGCCTTGAAGTACACCCTGAGATTAGAAAACGGGAA
GGTAGTTGACAAGGCTGAGGCACGAAAGCCGTTCAAATTCCGCCTTGGTG
TGGGTGAATGTGTGAAAGGATTCGATATCGGCGTGAGTGGTATGCGCGAA
GGTGGAGAGCGTCACCTAATTGTTCCTCCCGATCTGGCATACGGACGAAA
TCCGCCTCCCGGCATTCCCCGCAATGCCACTTTATACTTTGACGTCACAG
TTATCAAGGCTTTCTAA
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protein sequence of Ggra6074.t1

>Ggra6074.t1 ID=Ggra6074.t1|Name=Ggra6074.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MSFVGVEVKPRKVVWVDASSERHVSLSNACLVKHPKKENARVILEVLKPN
SEEGPASEQKLKRVALAVLSSRSENIQLDLILTSRLGLTIAGKSAAGAVV
HVVGSEYFAEYEESEEEDMDLDGGIMGVDVEFGGSDSEGSSISDDDGDSP
SADDAEDSGNGEDADKKVVARKRSGGLPVVNHRSGLKFQDIIIGSGKKVV
QGKNVALKYTLRLENGKVVDKAEARKPFKFRLGVGECVKGFDIGVSGMRE
GGERHLIVPPDLAYGRNPPPGIPRNATLYFDVTVIKAF*
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mRNA from alignment at tig00000045_pilon:481024..481967-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6074.t1 ID=Ggra6074.t1|Name=Ggra6074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=944bp|location=Sequence derived from alignment at tig00000045_pilon:481024..481967- (Gracilaria gracilis GNS1m male)
ATGTCATTTGTTGGTGTTGAAGTCAAGCCGAGGAAAGTGGTTTGGGTAGA
TGCGTCCTCCGAAAGACATGTTTCACTCAGTAATGTAAGTTGCAGAAACC
CTCAAAGGTCTTCGGCTCGTGCTAACGGCTTGTGTATTGTATTTTTCCTT
CGCATTGAAAGGCATGTCTTGTGAAACATCCAAAGAAAGAAAATGCTCGA
GTTATCTTGGAAGTCCTGAAGCCTAATAGCGAAGAAGGACCTGCTTCCGA
ACAAAAATTGAAACGAGTTGCTCTTGCGGTTCTGTCCTCACGGTCTGAAA
ACATCCAACTTGACCTAATACTTACTTCCCGACTTGGCCTTACCATTGCT
GGTAAATCTGCCGCTGGAGCTGTGGTTCACGTTGTCGGAAGCGAATATTT
TGCTGAGTACGAAGAAAGTGAGGAAGAGGACATGGATCTTGATGGCGGAA
TCATGGGCGTGGACGTCGAGTTTGGTGGGAGTGACAGTGAAGGTAGTAGT
ATATCTGATGATGATGGTGATTCTCCTAGTGCGGACGATGCGGAGGACTC
TGGAAATGGAGAAGACGCAGACAAGAAAGTGGTCGCGAGAAAACGAAGTG
GAGGTTTGCCTGTTGTGAATCATCGGTCTGGACTTAAGTTTCAGGATATC
ATTATTGGCTCCGGGAAAAAAGTTGTGCAAGGAAAGAATGTAGCCTTGAA
GTACACCCTGAGATTAGAAAACGGGAAGGTAGTTGACAAGGCTGAGGCAC
GAAAGCCGTTCAAATTCCGCCTTGGTGTGGGTGAATGTGTGAAAGGATTC
GATATCGGCGTGAGTGGTATGCGCGAAGGTGGAGAGCGTCACCTAATTGT
TCCTCCCGATCTGGCATACGGACGAAATCCGCCTCCCGGCATTCCCCGCA
ATGCCACTTTATACTTTGACGTCACAGTTATCAAGGCTTTCTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:481024..481967-

>Ggra6074.t1 ID=Ggra6074.t1|Name=Ggra6074.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000045_pilon:481024..481967- (Gracilaria gracilis GNS1m male)
ATGTCATTTGTTGGTGTTGAAGTCAAGCCGAGGAAAGTGGTTTGGGTAGA
TGCGTCCTCCGAAAGACATGTTTCACTCAGTAATGCATGTCTTGTGAAAC
ATCCAAAGAAAGAAAATGCTCGAGTTATCTTGGAAGTCCTGAAGCCTAAT
AGCGAAGAAGGACCTGCTTCCGAACAAAAATTGAAACGAGTTGCTCTTGC
GGTTCTGTCCTCACGGTCTGAAAACATCCAACTTGACCTAATACTTACTT
CCCGACTTGGCCTTACCATTGCTGGTAAATCTGCCGCTGGAGCTGTGGTT
CACGTTGTCGGAAGCGAATATTTTGCTGAGTACGAAGAAAGTGAGGAAGA
GGACATGGATCTTGATGGCGGAATCATGGGCGTGGACGTCGAGTTTGGTG
GGAGTGACAGTGAAGGTAGTAGTATATCTGATGATGATGGTGATTCTCCT
AGTGCGGACGATGCGGAGGACTCTGGAAATGGAGAAGACGCAGACAAGAA
AGTGGTCGCGAGAAAACGAAGTGGAGGTTTGCCTGTTGTGAATCATCGGT
CTGGACTTAAGTTTCAGGATATCATTATTGGCTCCGGGAAAAAAGTTGTG
CAAGGAAAGAATGTAGCCTTGAAGTACACCCTGAGATTAGAAAACGGGAA
GGTAGTTGACAAGGCTGAGGCACGAAAGCCGTTCAAATTCCGCCTTGGTG
TGGGTGAATGTGTGAAAGGATTCGATATCGGCGTGAGTGGTATGCGCGAA
GGTGGAGAGCGTCACCTAATTGTTCCTCCCGATCTGGCATACGGACGAAA
TCCGCCTCCCGGCATTCCCCGCAATGCCACTTTATACTTTGACGTCACAG
TTATCAAGGCTTTCTAA
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