Ggra6071.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6071.t1
Unique NameGgra6071.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length585
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:473871..475625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4558.Sb03g028080.1
PFAMsPGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Max annot lvl35493|Streptophyta
KEGG rclassRC00408
KEGG koko:K01835
KEGG ReactionR00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009941,GO:0009987,GO:0010319,GO:0015980,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0048046,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:1901575,GO:1901576
Evalue9.77e-232
EggNOG OGsCOG0033@1|root,KOG0625@2759|Eukaryota,37R89@33090|Viridiplantae,3GETM@35493|Streptophyta,3KX9J@4447|Liliopsida,3I7I4@38820|Poales
EC5.4.2.2
DescriptionPhosphoglucomutase/phosphomannomutase, C-terminal domain
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6071Ggra6071Gracilaria gracilis GNS1m malegenetig00000045_pilon 473871..475625 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6071.t1.stop1Ggra6071.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 473871..473873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6071.t1.CDS1Ggra6071.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 473871..475625 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6071.t1.exon1Ggra6071.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 473871..475625 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6071.t1.start1Ggra6071.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 475623..475625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6071.t1Ggra6071.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 473871..475625 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6071.t1 ID=Ggra6071.t1|Name=Ggra6071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp
MTASFSVTAVPTSPIDGQKTGTSGLRKKVALFQQPNYLHNWVQSLFSSLD
GLSASTIALGGDGRYWNTDAIRIICRIAAANGVKHVKVGQNGILCTPAMS
AVIRAQNLYGGIILTASHNPGGPTNDFGIKYNVSNGGPAPESVTSKIFAN
TKSISEYSYATLPDSPVEADPFSSVDLSVKGSTTFTNLSDNSTFTVEVID
SADDYVNLLRSMFDFEKLSALFARPDFSFLFDAMSGVTGPYGRRIFVEML
GGKPNCVMRADPLEDFGGAHPDPNLTYAAQLVAKCDPEQNADAPVMGAAS
DGDGDRNMILGRGFFVTPSDSVAVIAAKAVDAIPYFSSGLKGVARSMPTA
GALDRVAKGLGIEMHEVPTGWKYFGNLMDAGRAQICGEESFGTGSDHVRE
KDGIFAILAWLSIIAHESEGKDKIVSIEDIVTSHWKTYGRNYFSRYDYEE
VDSEAANAVMAHLDELQATMNSERSGDEGMIIDADFDTKVAVADNFSYVD
PVDGSEAKGQGRRFVFTDGSRVIFRLSGTGSSGATIRMYVERYESDETAQ
KEDAQVALKPFIDLALKVSKLQEFTGREKPTVIT*
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spliced messenger RNA

>Ggra6071.t1 ID=Ggra6071.t1|Name=Ggra6071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00000045_pilon:473871..475625- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGTCCTTCAGCGTCACTGCCGTTCCCACTTCTCCTATTGATGG
CCAGAAGACTGGTACATCGGGTCTGCGAAAAAAGGTCGCTCTCTTCCAGC
AGCCCAACTACCTTCACAACTGGGTTCAATCGCTGTTTTCGTCTCTCGAT
GGATTGAGTGCATCTACCATTGCACTGGGTGGCGATGGACGTTATTGGAA
CACCGATGCTATTCGCATCATTTGCAGAATCGCCGCGGCTAACGGCGTTA
AACACGTCAAGGTGGGCCAGAATGGCATTCTGTGCACCCCGGCGATGAGT
GCTGTTATCCGCGCGCAGAATTTGTACGGTGGCATTATCCTCACCGCTAG
TCACAACCCGGGTGGTCCCACCAATGACTTTGGCATCAAGTATAACGTTT
CGAATGGAGGCCCCGCTCCGGAGAGCGTCACATCCAAGATTTTCGCCAAC
ACCAAGTCCATCTCGGAGTATAGCTATGCAACGCTTCCGGATTCCCCCGT
TGAAGCAGACCCCTTCTCATCTGTTGATCTCTCTGTGAAAGGCTCCACAA
CTTTCACAAATCTGTCCGACAACTCTACGTTCACAGTCGAGGTCATCGAC
TCTGCCGACGATTATGTCAATCTTCTTCGCTCCATGTTCGACTTTGAAAA
GCTTTCTGCCCTGTTTGCTCGCCCGGACTTTTCCTTCTTGTTCGACGCCA
TGAGCGGTGTTACCGGACCATACGGACGCCGAATCTTCGTCGAAATGCTC
GGCGGAAAGCCAAACTGCGTCATGCGAGCAGATCCCCTGGAAGACTTTGG
AGGCGCCCATCCGGACCCCAATCTCACGTATGCTGCGCAACTGGTGGCCA
AGTGCGACCCCGAGCAGAATGCCGACGCGCCCGTCATGGGCGCCGCTTCT
GATGGAGATGGTGATCGAAACATGATTCTTGGCAGAGGCTTCTTTGTCAC
CCCGTCTGATTCGGTGGCCGTCATTGCTGCCAAGGCTGTTGATGCCATTC
CTTACTTTTCTAGTGGACTGAAGGGAGTGGCGCGTAGTATGCCTACCGCT
GGAGCACTGGATCGCGTTGCGAAGGGGTTGGGAATTGAGATGCATGAGGT
TCCTACTGGGTGGAAGTACTTTGGAAACCTTATGGACGCCGGTCGGGCTC
AGATTTGTGGCGAAGAGTCTTTTGGAACAGGTTCGGATCATGTGAGGGAG
AAGGACGGTATCTTTGCGATTCTGGCTTGGCTGTCTATAATCGCTCATGA
GAGTGAAGGAAAAGACAAGATTGTTAGCATCGAGGATATTGTCACTTCTC
ATTGGAAGACTTACGGACGAAATTATTTTTCCAGGTACGACTATGAAGAA
GTTGACAGTGAAGCTGCGAATGCTGTGATGGCTCACCTAGATGAGCTGCA
GGCAACGATGAACTCTGAACGCTCTGGCGATGAAGGAATGATAATCGATG
CTGATTTCGACACAAAGGTTGCAGTCGCGGATAACTTTTCATACGTTGAT
CCTGTTGACGGATCGGAGGCAAAGGGTCAGGGACGTCGATTTGTGTTTAC
CGATGGCAGTCGTGTGATTTTCAGGCTTTCCGGAACCGGTTCTTCTGGCG
CTACCATTCGGATGTACGTGGAACGATATGAGAGTGATGAAACGGCACAA
AAGGAAGACGCACAGGTTGCATTGAAACCTTTCATCGATCTTGCTTTGAA
GGTATCCAAATTGCAAGAGTTCACTGGGCGCGAGAAACCGACTGTGATTA
CCTGA
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protein sequence of Ggra6071.t1

>Ggra6071.t1 ID=Ggra6071.t1|Name=Ggra6071.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=585bp
MTASFSVTAVPTSPIDGQKTGTSGLRKKVALFQQPNYLHNWVQSLFSSLD
GLSASTIALGGDGRYWNTDAIRIICRIAAANGVKHVKVGQNGILCTPAMS
AVIRAQNLYGGIILTASHNPGGPTNDFGIKYNVSNGGPAPESVTSKIFAN
TKSISEYSYATLPDSPVEADPFSSVDLSVKGSTTFTNLSDNSTFTVEVID
SADDYVNLLRSMFDFEKLSALFARPDFSFLFDAMSGVTGPYGRRIFVEML
GGKPNCVMRADPLEDFGGAHPDPNLTYAAQLVAKCDPEQNADAPVMGAAS
DGDGDRNMILGRGFFVTPSDSVAVIAAKAVDAIPYFSSGLKGVARSMPTA
GALDRVAKGLGIEMHEVPTGWKYFGNLMDAGRAQICGEESFGTGSDHVRE
KDGIFAILAWLSIIAHESEGKDKIVSIEDIVTSHWKTYGRNYFSRYDYEE
VDSEAANAVMAHLDELQATMNSERSGDEGMIIDADFDTKVAVADNFSYVD
PVDGSEAKGQGRRFVFTDGSRVIFRLSGTGSSGATIRMYVERYESDETAQ
KEDAQVALKPFIDLALKVSKLQEFTGREKPTVIT*
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mRNA from alignment at tig00000045_pilon:473871..475625-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6071.t1 ID=Ggra6071.t1|Name=Ggra6071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00000045_pilon:473871..475625- (Gracilaria gracilis GNS1m male)
ATGACTGCGTCCTTCAGCGTCACTGCCGTTCCCACTTCTCCTATTGATGG
CCAGAAGACTGGTACATCGGGTCTGCGAAAAAAGGTCGCTCTCTTCCAGC
AGCCCAACTACCTTCACAACTGGGTTCAATCGCTGTTTTCGTCTCTCGAT
GGATTGAGTGCATCTACCATTGCACTGGGTGGCGATGGACGTTATTGGAA
CACCGATGCTATTCGCATCATTTGCAGAATCGCCGCGGCTAACGGCGTTA
AACACGTCAAGGTGGGCCAGAATGGCATTCTGTGCACCCCGGCGATGAGT
GCTGTTATCCGCGCGCAGAATTTGTACGGTGGCATTATCCTCACCGCTAG
TCACAACCCGGGTGGTCCCACCAATGACTTTGGCATCAAGTATAACGTTT
CGAATGGAGGCCCCGCTCCGGAGAGCGTCACATCCAAGATTTTCGCCAAC
ACCAAGTCCATCTCGGAGTATAGCTATGCAACGCTTCCGGATTCCCCCGT
TGAAGCAGACCCCTTCTCATCTGTTGATCTCTCTGTGAAAGGCTCCACAA
CTTTCACAAATCTGTCCGACAACTCTACGTTCACAGTCGAGGTCATCGAC
TCTGCCGACGATTATGTCAATCTTCTTCGCTCCATGTTCGACTTTGAAAA
GCTTTCTGCCCTGTTTGCTCGCCCGGACTTTTCCTTCTTGTTCGACGCCA
TGAGCGGTGTTACCGGACCATACGGACGCCGAATCTTCGTCGAAATGCTC
GGCGGAAAGCCAAACTGCGTCATGCGAGCAGATCCCCTGGAAGACTTTGG
AGGCGCCCATCCGGACCCCAATCTCACGTATGCTGCGCAACTGGTGGCCA
AGTGCGACCCCGAGCAGAATGCCGACGCGCCCGTCATGGGCGCCGCTTCT
GATGGAGATGGTGATCGAAACATGATTCTTGGCAGAGGCTTCTTTGTCAC
CCCGTCTGATTCGGTGGCCGTCATTGCTGCCAAGGCTGTTGATGCCATTC
CTTACTTTTCTAGTGGACTGAAGGGAGTGGCGCGTAGTATGCCTACCGCT
GGAGCACTGGATCGCGTTGCGAAGGGGTTGGGAATTGAGATGCATGAGGT
TCCTACTGGGTGGAAGTACTTTGGAAACCTTATGGACGCCGGTCGGGCTC
AGATTTGTGGCGAAGAGTCTTTTGGAACAGGTTCGGATCATGTGAGGGAG
AAGGACGGTATCTTTGCGATTCTGGCTTGGCTGTCTATAATCGCTCATGA
GAGTGAAGGAAAAGACAAGATTGTTAGCATCGAGGATATTGTCACTTCTC
ATTGGAAGACTTACGGACGAAATTATTTTTCCAGGTACGACTATGAAGAA
GTTGACAGTGAAGCTGCGAATGCTGTGATGGCTCACCTAGATGAGCTGCA
GGCAACGATGAACTCTGAACGCTCTGGCGATGAAGGAATGATAATCGATG
CTGATTTCGACACAAAGGTTGCAGTCGCGGATAACTTTTCATACGTTGAT
CCTGTTGACGGATCGGAGGCAAAGGGTCAGGGACGTCGATTTGTGTTTAC
CGATGGCAGTCGTGTGATTTTCAGGCTTTCCGGAACCGGTTCTTCTGGCG
CTACCATTCGGATGTACGTGGAACGATATGAGAGTGATGAAACGGCACAA
AAGGAAGACGCACAGGTTGCATTGAAACCTTTCATCGATCTTGCTTTGAA
GGTATCCAAATTGCAAGAGTTCACTGGGCGCGAGAAACCGACTGTGATTA
CCTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:473871..475625-

>Ggra6071.t1 ID=Ggra6071.t1|Name=Ggra6071.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1755bp|location=Sequence derived from alignment at tig00000045_pilon:473871..475625- (Gracilaria gracilis GNS1m male)
ATGACTGCGTCCTTCAGCGTCACTGCCGTTCCCACTTCTCCTATTGATGG
CCAGAAGACTGGTACATCGGGTCTGCGAAAAAAGGTCGCTCTCTTCCAGC
AGCCCAACTACCTTCACAACTGGGTTCAATCGCTGTTTTCGTCTCTCGAT
GGATTGAGTGCATCTACCATTGCACTGGGTGGCGATGGACGTTATTGGAA
CACCGATGCTATTCGCATCATTTGCAGAATCGCCGCGGCTAACGGCGTTA
AACACGTCAAGGTGGGCCAGAATGGCATTCTGTGCACCCCGGCGATGAGT
GCTGTTATCCGCGCGCAGAATTTGTACGGTGGCATTATCCTCACCGCTAG
TCACAACCCGGGTGGTCCCACCAATGACTTTGGCATCAAGTATAACGTTT
CGAATGGAGGCCCCGCTCCGGAGAGCGTCACATCCAAGATTTTCGCCAAC
ACCAAGTCCATCTCGGAGTATAGCTATGCAACGCTTCCGGATTCCCCCGT
TGAAGCAGACCCCTTCTCATCTGTTGATCTCTCTGTGAAAGGCTCCACAA
CTTTCACAAATCTGTCCGACAACTCTACGTTCACAGTCGAGGTCATCGAC
TCTGCCGACGATTATGTCAATCTTCTTCGCTCCATGTTCGACTTTGAAAA
GCTTTCTGCCCTGTTTGCTCGCCCGGACTTTTCCTTCTTGTTCGACGCCA
TGAGCGGTGTTACCGGACCATACGGACGCCGAATCTTCGTCGAAATGCTC
GGCGGAAAGCCAAACTGCGTCATGCGAGCAGATCCCCTGGAAGACTTTGG
AGGCGCCCATCCGGACCCCAATCTCACGTATGCTGCGCAACTGGTGGCCA
AGTGCGACCCCGAGCAGAATGCCGACGCGCCCGTCATGGGCGCCGCTTCT
GATGGAGATGGTGATCGAAACATGATTCTTGGCAGAGGCTTCTTTGTCAC
CCCGTCTGATTCGGTGGCCGTCATTGCTGCCAAGGCTGTTGATGCCATTC
CTTACTTTTCTAGTGGACTGAAGGGAGTGGCGCGTAGTATGCCTACCGCT
GGAGCACTGGATCGCGTTGCGAAGGGGTTGGGAATTGAGATGCATGAGGT
TCCTACTGGGTGGAAGTACTTTGGAAACCTTATGGACGCCGGTCGGGCTC
AGATTTGTGGCGAAGAGTCTTTTGGAACAGGTTCGGATCATGTGAGGGAG
AAGGACGGTATCTTTGCGATTCTGGCTTGGCTGTCTATAATCGCTCATGA
GAGTGAAGGAAAAGACAAGATTGTTAGCATCGAGGATATTGTCACTTCTC
ATTGGAAGACTTACGGACGAAATTATTTTTCCAGGTACGACTATGAAGAA
GTTGACAGTGAAGCTGCGAATGCTGTGATGGCTCACCTAGATGAGCTGCA
GGCAACGATGAACTCTGAACGCTCTGGCGATGAAGGAATGATAATCGATG
CTGATTTCGACACAAAGGTTGCAGTCGCGGATAACTTTTCATACGTTGAT
CCTGTTGACGGATCGGAGGCAAAGGGTCAGGGACGTCGATTTGTGTTTAC
CGATGGCAGTCGTGTGATTTTCAGGCTTTCCGGAACCGGTTCTTCTGGCG
CTACCATTCGGATGTACGTGGAACGATATGAGAGTGATGAAACGGCACAA
AAGGAAGACGCACAGGTTGCATTGAAACCTTTCATCGATCTTGCTTTGAA
GGTATCCAAATTGCAAGAGTTCACTGGGCGCGAGAAACCGACTGTGATTA
CCTGA
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