Ggra6061.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6061.t1
Unique Name	Ggra6061.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	824

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:408569..411040 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	40483.S8DSD1
Max annot lvl	4751\|Fungi
Evalue	9.48e-14
EggNOG OGs	2EBRF@1\|root,2RUZG@2759\|Eukaryota,3AY6Y@33154\|Opisthokonta,3PJC4@4751\|Fungi,3V3SJ@5204\|Basidiomycota,22BTX@155619\|Agaricomycetes

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6061	Ggra6061	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 408569..411040 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6061.t1.stop1	Ggra6061.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 408569..408571 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6061.t1.CDS1	Ggra6061.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 408569..411040 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6061.t1.exon1	Ggra6061.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 408569..411040 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6061.t1.start1	Ggra6061.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 411038..411040 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6061.t1	Ggra6061.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 408569..411040 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:408569..411040-
coding sequence from alignment at tig00000045_pilon:408569..411040-

mRNA sequence

>Ggra6061.t1 ID=Ggra6061.t1|Name=Ggra6061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=824bp
MSATLARDATSKLKEVVMGSLDNRIVWHTQEISFSESFVGLLQVYTDKSS
TTLKQTSVTAYPLHLVFLNFSDDLRRKCIREDLTVVAYFPTSLEDVSSSH
ADAMPFVSNKSLRDARMQILHHSLRRILEPILNLALKGIEFTGKDKVRRV
CHPLLASYCADIPEAKDILSILHGTKTGRPCHRCQVPRSALSSDVPTSFS
LRTQNQTKRLRETYSAVLKIAEQEDLERRPRRARDRRAQAESLMRSNSVS
ITPSFLESPFILRLIPGLSPYSLFSFEPLHNLHLGISKLIKTATIERLQS
HTLSTTIGASAPRSFRTVRTQLLNHANAILAAMERDFPARGLHIDFSTQE
KGKSLNGIFTNEGLRGMLEAKNYKALDMVFPFIGAFFDTCCGEHETAPIT
TIFTQYSDLVGAIFRYNREPHWNESSLSALQAQITAFKQCTTRTLADFHP
SRLGTLKFHLLDHLVEDIRRLGGIQYYDAGIYEHAHLLFKRHYRRTSRRR
ATAVEETIRSIDHENVRKKWIGDNLEEGRSRAPYAYPMPSIQLPRFTKRG
RSITMGQLRHYVRRLSSSSLTLSDIKKDVQDNDTISILDQIGEQALPPFL
SLVEETLEDNSISHFPEKIRITLVNSAVVRGGMVPVLRHFEASSNSVVLG
RNKYPVNQRVFSSPAFGPSRKPKFSTILVKGEKGATWVAQVVALVRVSVL
EYSGPVPEVAFVRYFEVLPPATALDNVLQCISLRWATSDEENHTVPFPAH
SKLKSSEHLTPWYGMVPGSAIQGTVHIVRSNYPAQPFSPTLQWFQHRFYI
NRFYHEPVQNPTEPEEPRIEVEQ*

spliced messenger RNA

>Ggra6061.t1 ID=Ggra6061.t1|Name=Ggra6061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2472bp|location=Sequence derived from alignment at tig00000045_pilon:408569..411040- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCAACTCTCGCAAGAGACGCCACCTCCAAGCTTAAGGAAGTGGT
CATGGGCTCCTTGGATAATAGAATAGTTTGGCATACTCAAGAAATAAGTT
TCAGTGAATCTTTCGTAGGTCTTCTGCAGGTGTACACCGATAAGTCTTCA
ACAACTCTAAAGCAAACTTCGGTCACCGCCTATCCCCTTCACCTCGTTTT
CCTCAACTTTTCCGACGACCTACGCCGCAAATGTATCCGCGAGGACCTCA
CGGTAGTTGCGTACTTCCCTACATCTCTGGAGGACGTTTCTTCGTCGCAT
GCAGATGCCATGCCCTTCGTCTCCAACAAATCTCTCCGCGATGCGAGGAT
GCAGATTCTGCATCACTCCCTTCGTCGTATTCTAGAGCCTATTCTAAACC
TTGCATTGAAAGGAATTGAGTTCACCGGGAAAGACAAAGTTCGTCGGGTA
TGCCATCCACTGTTGGCAAGTTACTGCGCAGACATACCTGAAGCAAAGGA
TATTCTGTCTATTCTTCATGGCACAAAGACCGGACGCCCCTGTCACAGAT
GCCAGGTGCCCCGCTCAGCTTTATCCAGTGATGTGCCTACCTCTTTCTCC
TTGCGCACACAGAACCAGACGAAACGACTAAGGGAAACATATTCCGCAGT
CTTGAAAATTGCAGAGCAAGAAGACCTTGAACGACGTCCCCGTCGAGCAA
GAGACAGAAGAGCCCAGGCAGAATCTCTCATGCGCTCCAACTCCGTATCT
ATTACCCCATCTTTTCTAGAAAGCCCTTTCATCCTTCGTTTGATCCCAGG
ACTTTCTCCTTACAGCCTCTTTTCCTTCGAACCGTTGCACAACCTTCATC
TTGGCATATCAAAGCTCATTAAAACAGCCACCATTGAGCGACTTCAGTCA
CACACGCTGTCAACCACCATAGGAGCATCTGCACCGCGCTCCTTCCGAAC
AGTTCGCACGCAACTTCTAAACCATGCAAACGCCATCCTCGCTGCCATGG
AAAGGGACTTCCCCGCTAGAGGCTTGCACATAGACTTTTCTACGCAAGAA
AAAGGCAAGTCTCTCAACGGTATATTCACCAACGAAGGTCTACGCGGAAT
GCTGGAGGCAAAGAACTACAAAGCACTGGACATGGTTTTCCCATTCATAG
GCGCTTTCTTTGATACATGTTGTGGAGAACATGAAACAGCACCTATCACA
ACCATCTTCACACAATACTCAGACTTGGTCGGCGCCATTTTCAGGTACAA
TCGAGAACCACACTGGAACGAAAGCTCTCTCTCAGCTCTCCAGGCCCAGA
TTACAGCCTTCAAACAATGTACGACCAGAACATTAGCCGATTTCCACCCC
TCTAGACTTGGAACGTTGAAGTTTCATCTTCTTGACCATCTCGTCGAGGA
TATCAGACGTCTCGGAGGTATCCAATACTACGATGCAGGGATATATGAGC
ATGCCCACCTCTTATTTAAAAGGCATTATCGGAGGACGTCGAGGAGAAGG
GCCACGGCTGTAGAGGAAACCATTCGCTCTATCGATCATGAAAATGTGAG
AAAGAAATGGATTGGTGATAATCTCGAAGAAGGCAGGTCACGCGCCCCAT
ACGCTTACCCAATGCCTTCTATTCAACTTCCTCGATTTACGAAGAGGGGT
CGTTCGATAACCATGGGACAACTTCGACACTACGTGAGGCGGCTCTCCTC
ATCTTCACTGACGCTATCTGATATTAAGAAGGACGTCCAGGATAATGATA
CAATCTCCATTCTAGACCAAATTGGAGAACAAGCACTTCCACCGTTCCTC
AGCCTGGTTGAGGAGACGCTCGAAGATAACTCCATATCCCACTTTCCGGA
GAAGATCAGGATAACGCTCGTGAACTCAGCAGTTGTAAGAGGTGGTATGG
TTCCCGTTCTACGACATTTTGAGGCCTCGTCCAATTCTGTCGTCCTAGGT
AGAAACAAGTACCCTGTCAACCAAAGGGTTTTTTCCTCTCCAGCTTTCGG
ACCGAGCAGGAAGCCAAAATTCTCGACCATCTTGGTGAAAGGAGAAAAAG
GTGCAACATGGGTTGCTCAAGTAGTCGCTCTTGTTCGTGTCTCTGTTCTC
GAATACTCGGGCCCTGTTCCAGAAGTGGCATTCGTTCGGTATTTTGAGGT
ATTGCCTCCCGCAACAGCTTTGGACAATGTTTTGCAATGCATATCTTTAC
GTTGGGCTACAAGTGATGAAGAAAATCACACTGTGCCCTTCCCTGCCCAT
TCAAAACTAAAGAGCTCAGAACACCTCACCCCTTGGTATGGGATGGTTCC
GGGTTCAGCAATACAGGGAACAGTACATATAGTTCGTTCTAATTATCCAG
CCCAGCCATTTTCTCCTACACTCCAATGGTTCCAACATCGATTCTACATC
AATAGGTTTTATCATGAGCCTGTTCAAAACCCAACTGAACCCGAAGAACC
CCGTATAGAAGTAGAACAGTAA

protein sequence of Ggra6061.t1

>Ggra6061.t1 ID=Ggra6061.t1|Name=Ggra6061.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=824bp
MSATLARDATSKLKEVVMGSLDNRIVWHTQEISFSESFVGLLQVYTDKSS
TTLKQTSVTAYPLHLVFLNFSDDLRRKCIREDLTVVAYFPTSLEDVSSSH
ADAMPFVSNKSLRDARMQILHHSLRRILEPILNLALKGIEFTGKDKVRRV
CHPLLASYCADIPEAKDILSILHGTKTGRPCHRCQVPRSALSSDVPTSFS
LRTQNQTKRLRETYSAVLKIAEQEDLERRPRRARDRRAQAESLMRSNSVS
ITPSFLESPFILRLIPGLSPYSLFSFEPLHNLHLGISKLIKTATIERLQS
HTLSTTIGASAPRSFRTVRTQLLNHANAILAAMERDFPARGLHIDFSTQE
KGKSLNGIFTNEGLRGMLEAKNYKALDMVFPFIGAFFDTCCGEHETAPIT
TIFTQYSDLVGAIFRYNREPHWNESSLSALQAQITAFKQCTTRTLADFHP
SRLGTLKFHLLDHLVEDIRRLGGIQYYDAGIYEHAHLLFKRHYRRTSRRR
ATAVEETIRSIDHENVRKKWIGDNLEEGRSRAPYAYPMPSIQLPRFTKRG
RSITMGQLRHYVRRLSSSSLTLSDIKKDVQDNDTISILDQIGEQALPPFL
SLVEETLEDNSISHFPEKIRITLVNSAVVRGGMVPVLRHFEASSNSVVLG
RNKYPVNQRVFSSPAFGPSRKPKFSTILVKGEKGATWVAQVVALVRVSVL
EYSGPVPEVAFVRYFEVLPPATALDNVLQCISLRWATSDEENHTVPFPAH
SKLKSSEHLTPWYGMVPGSAIQGTVHIVRSNYPAQPFSPTLQWFQHRFYI
NRFYHEPVQNPTEPEEPRIEVEQ*

mRNA from alignment at tig00000045_pilon:408569..411040-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6061.t1 ID=Ggra6061.t1|Name=Ggra6061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2472bp|location=Sequence derived from alignment at tig00000045_pilon:408569..411040- (Gracilaria gracilis GNS1m male)
ATGTCCGCAACTCTCGCAAGAGACGCCACCTCCAAGCTTAAGGAAGTGGT
CATGGGCTCCTTGGATAATAGAATAGTTTGGCATACTCAAGAAATAAGTT
TCAGTGAATCTTTCGTAGGTCTTCTGCAGGTGTACACCGATAAGTCTTCA
ACAACTCTAAAGCAAACTTCGGTCACCGCCTATCCCCTTCACCTCGTTTT
CCTCAACTTTTCCGACGACCTACGCCGCAAATGTATCCGCGAGGACCTCA
CGGTAGTTGCGTACTTCCCTACATCTCTGGAGGACGTTTCTTCGTCGCAT
GCAGATGCCATGCCCTTCGTCTCCAACAAATCTCTCCGCGATGCGAGGAT
GCAGATTCTGCATCACTCCCTTCGTCGTATTCTAGAGCCTATTCTAAACC
TTGCATTGAAAGGAATTGAGTTCACCGGGAAAGACAAAGTTCGTCGGGTA
TGCCATCCACTGTTGGCAAGTTACTGCGCAGACATACCTGAAGCAAAGGA
TATTCTGTCTATTCTTCATGGCACAAAGACCGGACGCCCCTGTCACAGAT
GCCAGGTGCCCCGCTCAGCTTTATCCAGTGATGTGCCTACCTCTTTCTCC
TTGCGCACACAGAACCAGACGAAACGACTAAGGGAAACATATTCCGCAGT
CTTGAAAATTGCAGAGCAAGAAGACCTTGAACGACGTCCCCGTCGAGCAA
GAGACAGAAGAGCCCAGGCAGAATCTCTCATGCGCTCCAACTCCGTATCT
ATTACCCCATCTTTTCTAGAAAGCCCTTTCATCCTTCGTTTGATCCCAGG
ACTTTCTCCTTACAGCCTCTTTTCCTTCGAACCGTTGCACAACCTTCATC
TTGGCATATCAAAGCTCATTAAAACAGCCACCATTGAGCGACTTCAGTCA
CACACGCTGTCAACCACCATAGGAGCATCTGCACCGCGCTCCTTCCGAAC
AGTTCGCACGCAACTTCTAAACCATGCAAACGCCATCCTCGCTGCCATGG
AAAGGGACTTCCCCGCTAGAGGCTTGCACATAGACTTTTCTACGCAAGAA
AAAGGCAAGTCTCTCAACGGTATATTCACCAACGAAGGTCTACGCGGAAT
GCTGGAGGCAAAGAACTACAAAGCACTGGACATGGTTTTCCCATTCATAG
GCGCTTTCTTTGATACATGTTGTGGAGAACATGAAACAGCACCTATCACA
ACCATCTTCACACAATACTCAGACTTGGTCGGCGCCATTTTCAGGTACAA
TCGAGAACCACACTGGAACGAAAGCTCTCTCTCAGCTCTCCAGGCCCAGA
TTACAGCCTTCAAACAATGTACGACCAGAACATTAGCCGATTTCCACCCC
TCTAGACTTGGAACGTTGAAGTTTCATCTTCTTGACCATCTCGTCGAGGA
TATCAGACGTCTCGGAGGTATCCAATACTACGATGCAGGGATATATGAGC
ATGCCCACCTCTTATTTAAAAGGCATTATCGGAGGACGTCGAGGAGAAGG
GCCACGGCTGTAGAGGAAACCATTCGCTCTATCGATCATGAAAATGTGAG
AAAGAAATGGATTGGTGATAATCTCGAAGAAGGCAGGTCACGCGCCCCAT
ACGCTTACCCAATGCCTTCTATTCAACTTCCTCGATTTACGAAGAGGGGT
CGTTCGATAACCATGGGACAACTTCGACACTACGTGAGGCGGCTCTCCTC
ATCTTCACTGACGCTATCTGATATTAAGAAGGACGTCCAGGATAATGATA
CAATCTCCATTCTAGACCAAATTGGAGAACAAGCACTTCCACCGTTCCTC
AGCCTGGTTGAGGAGACGCTCGAAGATAACTCCATATCCCACTTTCCGGA
GAAGATCAGGATAACGCTCGTGAACTCAGCAGTTGTAAGAGGTGGTATGG
TTCCCGTTCTACGACATTTTGAGGCCTCGTCCAATTCTGTCGTCCTAGGT
AGAAACAAGTACCCTGTCAACCAAAGGGTTTTTTCCTCTCCAGCTTTCGG
ACCGAGCAGGAAGCCAAAATTCTCGACCATCTTGGTGAAAGGAGAAAAAG
GTGCAACATGGGTTGCTCAAGTAGTCGCTCTTGTTCGTGTCTCTGTTCTC
GAATACTCGGGCCCTGTTCCAGAAGTGGCATTCGTTCGGTATTTTGAGGT
ATTGCCTCCCGCAACAGCTTTGGACAATGTTTTGCAATGCATATCTTTAC
GTTGGGCTACAAGTGATGAAGAAAATCACACTGTGCCCTTCCCTGCCCAT
TCAAAACTAAAGAGCTCAGAACACCTCACCCCTTGGTATGGGATGGTTCC
GGGTTCAGCAATACAGGGAACAGTACATATAGTTCGTTCTAATTATCCAG
CCCAGCCATTTTCTCCTACACTCCAATGGTTCCAACATCGATTCTACATC
AATAGGTTTTATCATGAGCCTGTTCAAAACCCAACTGAACCCGAAGAACC
CCGTATAGAAGTAGAACAGTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:408569..411040-

>Ggra6061.t1 ID=Ggra6061.t1|Name=Ggra6061.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2472bp|location=Sequence derived from alignment at tig00000045_pilon:408569..411040- (Gracilaria gracilis GNS1m male)
ATGTCCGCAACTCTCGCAAGAGACGCCACCTCCAAGCTTAAGGAAGTGGT
CATGGGCTCCTTGGATAATAGAATAGTTTGGCATACTCAAGAAATAAGTT
TCAGTGAATCTTTCGTAGGTCTTCTGCAGGTGTACACCGATAAGTCTTCA
ACAACTCTAAAGCAAACTTCGGTCACCGCCTATCCCCTTCACCTCGTTTT
CCTCAACTTTTCCGACGACCTACGCCGCAAATGTATCCGCGAGGACCTCA
CGGTAGTTGCGTACTTCCCTACATCTCTGGAGGACGTTTCTTCGTCGCAT
GCAGATGCCATGCCCTTCGTCTCCAACAAATCTCTCCGCGATGCGAGGAT
GCAGATTCTGCATCACTCCCTTCGTCGTATTCTAGAGCCTATTCTAAACC
TTGCATTGAAAGGAATTGAGTTCACCGGGAAAGACAAAGTTCGTCGGGTA
TGCCATCCACTGTTGGCAAGTTACTGCGCAGACATACCTGAAGCAAAGGA
TATTCTGTCTATTCTTCATGGCACAAAGACCGGACGCCCCTGTCACAGAT
GCCAGGTGCCCCGCTCAGCTTTATCCAGTGATGTGCCTACCTCTTTCTCC
TTGCGCACACAGAACCAGACGAAACGACTAAGGGAAACATATTCCGCAGT
CTTGAAAATTGCAGAGCAAGAAGACCTTGAACGACGTCCCCGTCGAGCAA
GAGACAGAAGAGCCCAGGCAGAATCTCTCATGCGCTCCAACTCCGTATCT
ATTACCCCATCTTTTCTAGAAAGCCCTTTCATCCTTCGTTTGATCCCAGG
ACTTTCTCCTTACAGCCTCTTTTCCTTCGAACCGTTGCACAACCTTCATC
TTGGCATATCAAAGCTCATTAAAACAGCCACCATTGAGCGACTTCAGTCA
CACACGCTGTCAACCACCATAGGAGCATCTGCACCGCGCTCCTTCCGAAC
AGTTCGCACGCAACTTCTAAACCATGCAAACGCCATCCTCGCTGCCATGG
AAAGGGACTTCCCCGCTAGAGGCTTGCACATAGACTTTTCTACGCAAGAA
AAAGGCAAGTCTCTCAACGGTATATTCACCAACGAAGGTCTACGCGGAAT
GCTGGAGGCAAAGAACTACAAAGCACTGGACATGGTTTTCCCATTCATAG
GCGCTTTCTTTGATACATGTTGTGGAGAACATGAAACAGCACCTATCACA
ACCATCTTCACACAATACTCAGACTTGGTCGGCGCCATTTTCAGGTACAA
TCGAGAACCACACTGGAACGAAAGCTCTCTCTCAGCTCTCCAGGCCCAGA
TTACAGCCTTCAAACAATGTACGACCAGAACATTAGCCGATTTCCACCCC
TCTAGACTTGGAACGTTGAAGTTTCATCTTCTTGACCATCTCGTCGAGGA
TATCAGACGTCTCGGAGGTATCCAATACTACGATGCAGGGATATATGAGC
ATGCCCACCTCTTATTTAAAAGGCATTATCGGAGGACGTCGAGGAGAAGG
GCCACGGCTGTAGAGGAAACCATTCGCTCTATCGATCATGAAAATGTGAG
AAAGAAATGGATTGGTGATAATCTCGAAGAAGGCAGGTCACGCGCCCCAT
ACGCTTACCCAATGCCTTCTATTCAACTTCCTCGATTTACGAAGAGGGGT
CGTTCGATAACCATGGGACAACTTCGACACTACGTGAGGCGGCTCTCCTC
ATCTTCACTGACGCTATCTGATATTAAGAAGGACGTCCAGGATAATGATA
CAATCTCCATTCTAGACCAAATTGGAGAACAAGCACTTCCACCGTTCCTC
AGCCTGGTTGAGGAGACGCTCGAAGATAACTCCATATCCCACTTTCCGGA
GAAGATCAGGATAACGCTCGTGAACTCAGCAGTTGTAAGAGGTGGTATGG
TTCCCGTTCTACGACATTTTGAGGCCTCGTCCAATTCTGTCGTCCTAGGT
AGAAACAAGTACCCTGTCAACCAAAGGGTTTTTTCCTCTCCAGCTTTCGG
ACCGAGCAGGAAGCCAAAATTCTCGACCATCTTGGTGAAAGGAGAAAAAG
GTGCAACATGGGTTGCTCAAGTAGTCGCTCTTGTTCGTGTCTCTGTTCTC
GAATACTCGGGCCCTGTTCCAGAAGTGGCATTCGTTCGGTATTTTGAGGT
ATTGCCTCCCGCAACAGCTTTGGACAATGTTTTGCAATGCATATCTTTAC
GTTGGGCTACAAGTGATGAAGAAAATCACACTGTGCCCTTCCCTGCCCAT
TCAAAACTAAAGAGCTCAGAACACCTCACCCCTTGGTATGGGATGGTTCC
GGGTTCAGCAATACAGGGAACAGTACATATAGTTCGTTCTAATTATCCAG
CCCAGCCATTTTCTCCTACACTCCAATGGTTCCAACATCGATTCTACATC
AATAGGTTTTATCATGAGCCTGTTCAAAACCCAACTGAACCCGAAGAACC
CCGTATAGAAGTAGAACAGTAA