Ggra6053.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6053.t1
Unique NameGgra6053.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length397
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:370582..371772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.J23086.1.p
Preferred nameNFS1
PFAMsAminotran_5
Max annot lvl35493|Streptophyta
KEGG rclassRC01789,RC02313
KEGG koko:K04487
KEGG ReactionR07460,R11528,R11529
KEGG Pathwayko00730,ko01100,ko04122,map00730,map01100,map04122
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006790,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0017076,GO:0022607,GO:0030554,GO:0031071,GO:0031163,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue9.55e-215
EggNOG OGsCOG1104@1|root,KOG1549@2759|Eukaryota,37JQM@33090|Viridiplantae,3G81A@35493|Streptophyta,3KMD1@4447|Liliopsida,3I6MH@38820|Poales
EC2.8.1.7
DescriptionAminotransferase class-V
COG categoryE
BRITEko00000,ko00001,ko01000,ko02048,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6053Ggra6053Gracilaria gracilis GNS1m malegenetig00000045_pilon 370582..371772 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6053.t1.stop1Ggra6053.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 370582..370584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6053.t1.CDS1Ggra6053.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 370582..371772 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6053.t1.exon1Ggra6053.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 370582..371772 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6053.t1.start1Ggra6053.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 371770..371772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6053.t1Ggra6053.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 370582..371772 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6053.t1 ID=Ggra6053.t1|Name=Ggra6053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=397bp
MQSTTPVDPRVADVMIPHLTTHHGNPHSRTHAYGWDTERAVEVARAQLAS
LIGADPREIIFTSGATECNNMVVKGVAMFYKSRKKHVVTTQTEHKCVLDS
CRWLQQRGFEVTYLPVKSDGLLDLDELKDAIRPDTSLVSVMAVNNEIGVV
QPLQEIGEMCREKGVFFHTDAAQMVGKLPMDVNQMNIDLMSISGHKFYGP
KGIGALYLRRRPRVRIEPQMSGGGQERGLRSGTLPTALVVGMGEAARISQ
QEMEYDLERMTTLSNRLYDGVTSRVPNVVLNGSKEHRFPGNLNMSFAYVE
GESLLMALKDVAVSSGSACTSASLEPSYVLRALGVDDEMAHTSIRFGIGR
FTTEKEVDYAVDLAEEHVQRLRAMSPLWEMVQEGVDLKSIKWTQEH*
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spliced messenger RNA

>Ggra6053.t1 ID=Ggra6053.t1|Name=Ggra6053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00000045_pilon:370582..371772- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCCACAACGCCAGTAGATCCCCGTGTCGCAGATGTAATGATCCC
ACATTTGACCACGCATCATGGAAATCCACACTCTCGAACACATGCGTATG
GATGGGATACTGAACGCGCAGTGGAAGTTGCGCGTGCACAGCTAGCGTCT
CTGATCGGTGCTGATCCACGCGAGATTATTTTCACGTCTGGGGCCACCGA
ATGTAACAACATGGTGGTGAAAGGGGTTGCTATGTTCTACAAGTCTAGAA
AGAAACACGTTGTTACCACCCAGACAGAGCACAAATGCGTTTTAGACAGT
TGTCGTTGGTTGCAACAGCGCGGCTTTGAAGTCACATATCTCCCTGTTAA
ATCGGACGGTCTATTAGATCTTGATGAGCTTAAGGACGCCATCCGTCCAG
ATACATCGCTAGTAAGCGTCATGGCAGTCAATAACGAGATTGGTGTTGTG
CAACCGCTTCAGGAGATTGGTGAAATGTGCAGAGAAAAGGGCGTCTTCTT
TCACACTGATGCTGCTCAGATGGTTGGAAAACTGCCAATGGATGTGAACC
AAATGAACATTGACCTAATGTCCATATCCGGCCATAAGTTTTACGGACCG
AAAGGAATTGGTGCGCTGTACTTGCGGAGAAGGCCACGCGTGCGTATTGA
ACCACAGATGAGCGGCGGTGGGCAAGAAAGAGGTCTACGTTCCGGAACTT
TACCAACCGCGTTGGTTGTTGGTATGGGTGAGGCTGCCAGAATTAGTCAG
CAAGAAATGGAATATGACTTGGAGCGAATGACAACTCTTAGCAATCGCCT
TTATGACGGAGTTACAAGCAGAGTTCCAAATGTTGTCTTGAATGGCAGCA
AAGAGCATCGCTTTCCCGGTAATCTCAACATGAGCTTTGCTTATGTGGAA
GGCGAAAGTTTGTTAATGGCATTGAAGGACGTAGCTGTCAGCAGCGGAAG
CGCATGCACTAGTGCTAGTCTAGAGCCCAGTTACGTCCTTCGCGCTCTGG
GAGTGGACGACGAGATGGCCCACACAAGCATTAGATTTGGTATTGGCAGG
TTTACCACTGAAAAGGAGGTAGACTATGCTGTCGACTTGGCAGAAGAGCA
TGTGCAGAGATTACGAGCGATGAGCCCTCTTTGGGAAATGGTACAAGAAG
GAGTAGACCTGAAGTCAATCAAGTGGACCCAAGAACACTAG
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protein sequence of Ggra6053.t1

>Ggra6053.t1 ID=Ggra6053.t1|Name=Ggra6053.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=397bp
MQSTTPVDPRVADVMIPHLTTHHGNPHSRTHAYGWDTERAVEVARAQLAS
LIGADPREIIFTSGATECNNMVVKGVAMFYKSRKKHVVTTQTEHKCVLDS
CRWLQQRGFEVTYLPVKSDGLLDLDELKDAIRPDTSLVSVMAVNNEIGVV
QPLQEIGEMCREKGVFFHTDAAQMVGKLPMDVNQMNIDLMSISGHKFYGP
KGIGALYLRRRPRVRIEPQMSGGGQERGLRSGTLPTALVVGMGEAARISQ
QEMEYDLERMTTLSNRLYDGVTSRVPNVVLNGSKEHRFPGNLNMSFAYVE
GESLLMALKDVAVSSGSACTSASLEPSYVLRALGVDDEMAHTSIRFGIGR
FTTEKEVDYAVDLAEEHVQRLRAMSPLWEMVQEGVDLKSIKWTQEH*
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mRNA from alignment at tig00000045_pilon:370582..371772-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6053.t1 ID=Ggra6053.t1|Name=Ggra6053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00000045_pilon:370582..371772- (Gracilaria gracilis GNS1m male)
ATGCAATCCACAACGCCAGTAGATCCCCGTGTCGCAGATGTAATGATCCC
ACATTTGACCACGCATCATGGAAATCCACACTCTCGAACACATGCGTATG
GATGGGATACTGAACGCGCAGTGGAAGTTGCGCGTGCACAGCTAGCGTCT
CTGATCGGTGCTGATCCACGCGAGATTATTTTCACGTCTGGGGCCACCGA
ATGTAACAACATGGTGGTGAAAGGGGTTGCTATGTTCTACAAGTCTAGAA
AGAAACACGTTGTTACCACCCAGACAGAGCACAAATGCGTTTTAGACAGT
TGTCGTTGGTTGCAACAGCGCGGCTTTGAAGTCACATATCTCCCTGTTAA
ATCGGACGGTCTATTAGATCTTGATGAGCTTAAGGACGCCATCCGTCCAG
ATACATCGCTAGTAAGCGTCATGGCAGTCAATAACGAGATTGGTGTTGTG
CAACCGCTTCAGGAGATTGGTGAAATGTGCAGAGAAAAGGGCGTCTTCTT
TCACACTGATGCTGCTCAGATGGTTGGAAAACTGCCAATGGATGTGAACC
AAATGAACATTGACCTAATGTCCATATCCGGCCATAAGTTTTACGGACCG
AAAGGAATTGGTGCGCTGTACTTGCGGAGAAGGCCACGCGTGCGTATTGA
ACCACAGATGAGCGGCGGTGGGCAAGAAAGAGGTCTACGTTCCGGAACTT
TACCAACCGCGTTGGTTGTTGGTATGGGTGAGGCTGCCAGAATTAGTCAG
CAAGAAATGGAATATGACTTGGAGCGAATGACAACTCTTAGCAATCGCCT
TTATGACGGAGTTACAAGCAGAGTTCCAAATGTTGTCTTGAATGGCAGCA
AAGAGCATCGCTTTCCCGGTAATCTCAACATGAGCTTTGCTTATGTGGAA
GGCGAAAGTTTGTTAATGGCATTGAAGGACGTAGCTGTCAGCAGCGGAAG
CGCATGCACTAGTGCTAGTCTAGAGCCCAGTTACGTCCTTCGCGCTCTGG
GAGTGGACGACGAGATGGCCCACACAAGCATTAGATTTGGTATTGGCAGG
TTTACCACTGAAAAGGAGGTAGACTATGCTGTCGACTTGGCAGAAGAGCA
TGTGCAGAGATTACGAGCGATGAGCCCTCTTTGGGAAATGGTACAAGAAG
GAGTAGACCTGAAGTCAATCAAGTGGACCCAAGAACACTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:370582..371772-

>Ggra6053.t1 ID=Ggra6053.t1|Name=Ggra6053.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1191bp|location=Sequence derived from alignment at tig00000045_pilon:370582..371772- (Gracilaria gracilis GNS1m male)
ATGCAATCCACAACGCCAGTAGATCCCCGTGTCGCAGATGTAATGATCCC
ACATTTGACCACGCATCATGGAAATCCACACTCTCGAACACATGCGTATG
GATGGGATACTGAACGCGCAGTGGAAGTTGCGCGTGCACAGCTAGCGTCT
CTGATCGGTGCTGATCCACGCGAGATTATTTTCACGTCTGGGGCCACCGA
ATGTAACAACATGGTGGTGAAAGGGGTTGCTATGTTCTACAAGTCTAGAA
AGAAACACGTTGTTACCACCCAGACAGAGCACAAATGCGTTTTAGACAGT
TGTCGTTGGTTGCAACAGCGCGGCTTTGAAGTCACATATCTCCCTGTTAA
ATCGGACGGTCTATTAGATCTTGATGAGCTTAAGGACGCCATCCGTCCAG
ATACATCGCTAGTAAGCGTCATGGCAGTCAATAACGAGATTGGTGTTGTG
CAACCGCTTCAGGAGATTGGTGAAATGTGCAGAGAAAAGGGCGTCTTCTT
TCACACTGATGCTGCTCAGATGGTTGGAAAACTGCCAATGGATGTGAACC
AAATGAACATTGACCTAATGTCCATATCCGGCCATAAGTTTTACGGACCG
AAAGGAATTGGTGCGCTGTACTTGCGGAGAAGGCCACGCGTGCGTATTGA
ACCACAGATGAGCGGCGGTGGGCAAGAAAGAGGTCTACGTTCCGGAACTT
TACCAACCGCGTTGGTTGTTGGTATGGGTGAGGCTGCCAGAATTAGTCAG
CAAGAAATGGAATATGACTTGGAGCGAATGACAACTCTTAGCAATCGCCT
TTATGACGGAGTTACAAGCAGAGTTCCAAATGTTGTCTTGAATGGCAGCA
AAGAGCATCGCTTTCCCGGTAATCTCAACATGAGCTTTGCTTATGTGGAA
GGCGAAAGTTTGTTAATGGCATTGAAGGACGTAGCTGTCAGCAGCGGAAG
CGCATGCACTAGTGCTAGTCTAGAGCCCAGTTACGTCCTTCGCGCTCTGG
GAGTGGACGACGAGATGGCCCACACAAGCATTAGATTTGGTATTGGCAGG
TTTACCACTGAAAAGGAGGTAGACTATGCTGTCGACTTGGCAGAAGAGCA
TGTGCAGAGATTACGAGCGATGAGCCCTCTTTGGGAAATGGTACAAGAAG
GAGTAGACCTGAAGTCAATCAAGTGGACCCAAGAACACTAG
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