Ggra6052.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6052.t1
Unique NameGgra6052.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length394
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:367918..369397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP193CT
Preferred namecMDH
PFAMsLdh_1_C,Ldh_1_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00031
KEGG koko:K00024,ko:K00025,ko:K00026
KEGG ReactionR00342,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04964,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map04964
KEGG ModuleM00009,M00011,M00012,M00168,M00171,M00173,M00346,M00374,M00620,M00740
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030054,GO:0030060,GO:0031090,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0046686,GO:0048046,GO:0050896,GO:0051186,GO:0055044,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0072524,GO:0098588,GO:0098805,GO:1901360,GO:1901564
Evalue9.26e-141
EggNOG OGsCOG0039@1|root,KOG1496@2759|Eukaryota
EC1.1.1.37
Descriptionmalate metabolic process
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6052Ggra6052Gracilaria gracilis GNS1m malegenetig00000045_pilon 367918..369397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6052.t1Ggra6052.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 367918..369397 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6052.t1.stop1Ggra6052.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 367918..367920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6052.t1.CDS1Ggra6052.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 367918..368971 -
Ggra6052.t1.CDS2Ggra6052.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 369270..369397 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6052.t1.exon1Ggra6052.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 367918..368971 -
Ggra6052.t1.exon2Ggra6052.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 369270..369397 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6052.t1.intron1Ggra6052.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 368972..369269 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6052.t1.start1Ggra6052.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 369395..369397 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6052.t1 ID=Ggra6052.t1|Name=Ggra6052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=394bp
MRLGASRSLRGLATKTDVLPPLKVAVTGAAGQIGYALVMRIASGEMLGPD
QLLELSLIETEAGMSPLRGVMMELEDGAFPLLSKVTATTDLKEGFGDASF
AMLIGAQPRTKGMERSDLMAANAKIFAEQGKALNESAAPNAKVLVVGNPA
NTNALIASENAPDMWPEQFIAMTRLDQSRAKALLAEKADVPVKDVDRVII
WGNHSATQYPDLSHARVGGKWAKSIVTDEKWIKEDFIPRVQKRGAEVIGA
RGASSAASAASAALDTVRDLHQGSDEEWLSNAVVSDGSYGITKGIWYSVP
TVCKGDSHFRRVQRLPIDEFSAQMMSKTEKELLDERDSVRHLLPGHAAKP
VSWNVLESLQESFEAGDMATVDKIASELPESMQKSVNEAKAVA*
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spliced messenger RNA

>Ggra6052.t1 ID=Ggra6052.t1|Name=Ggra6052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00000045_pilon:367918..369397- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTAGGCGCTTCGAGATCGCTGCGCGGACTAGCAACGAAGACCGA
TGTACTCCCTCCTCTCAAGGTTGCTGTCACTGGAGCTGCCGGCCAAATCG
GCTATGCTCTTGTCATGCGTATCGCAAGCGGGGAAATGCTGGGCCCAGAT
CAGCTTTTGGAGCTCAGTCTTATTGAGACTGAGGCGGGAATGTCACCACT
GCGCGGGGTTATGATGGAGCTTGAAGATGGTGCGTTCCCCTTGCTTTCCA
AGGTTACAGCGACTACGGACCTCAAGGAAGGCTTTGGCGATGCGTCATTT
GCAATGCTCATTGGGGCACAACCGCGCACGAAGGGCATGGAACGTTCCGA
TCTCATGGCTGCTAATGCGAAGATTTTTGCGGAGCAAGGAAAGGCTCTGA
ACGAATCCGCAGCGCCAAACGCCAAGGTTCTTGTTGTTGGTAACCCTGCC
AATACCAATGCGCTCATTGCGTCTGAGAATGCGCCGGATATGTGGCCGGA
GCAGTTCATTGCAATGACTCGTCTCGACCAGTCTCGCGCGAAAGCTTTAT
TGGCTGAAAAAGCAGATGTTCCTGTCAAGGATGTTGATCGCGTGATTATC
TGGGGTAACCATTCGGCTACGCAGTACCCCGATCTTTCCCATGCTCGCGT
TGGCGGCAAATGGGCGAAGTCAATTGTCACTGATGAGAAGTGGATCAAGG
AAGACTTTATTCCGCGCGTTCAGAAACGAGGTGCGGAGGTTATAGGCGCA
CGAGGCGCATCATCGGCAGCGTCGGCCGCGTCAGCTGCACTTGACACCGT
GAGAGACTTGCACCAAGGTTCGGACGAAGAGTGGCTGTCAAACGCTGTTG
TATCTGATGGAAGCTACGGAATCACGAAGGGTATCTGGTACTCTGTTCCA
ACGGTGTGCAAGGGAGATTCTCACTTCCGACGCGTTCAGCGCCTGCCGAT
TGATGAGTTCTCAGCTCAAATGATGAGCAAGACCGAAAAAGAGCTGCTTG
ATGAGCGTGACTCAGTCCGCCATTTGTTGCCGGGACACGCGGCGAAACCA
GTATCCTGGAACGTTTTGGAATCACTTCAGGAATCATTCGAGGCAGGTGA
TATGGCGACGGTAGATAAGATAGCTTCAGAATTGCCTGAATCCATGCAGA
AGAGCGTGAATGAAGCGAAGGCTGTGGCCTAA
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protein sequence of Ggra6052.t1

>Ggra6052.t1 ID=Ggra6052.t1|Name=Ggra6052.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=394bp
MRLGASRSLRGLATKTDVLPPLKVAVTGAAGQIGYALVMRIASGEMLGPD
QLLELSLIETEAGMSPLRGVMMELEDGAFPLLSKVTATTDLKEGFGDASF
AMLIGAQPRTKGMERSDLMAANAKIFAEQGKALNESAAPNAKVLVVGNPA
NTNALIASENAPDMWPEQFIAMTRLDQSRAKALLAEKADVPVKDVDRVII
WGNHSATQYPDLSHARVGGKWAKSIVTDEKWIKEDFIPRVQKRGAEVIGA
RGASSAASAASAALDTVRDLHQGSDEEWLSNAVVSDGSYGITKGIWYSVP
TVCKGDSHFRRVQRLPIDEFSAQMMSKTEKELLDERDSVRHLLPGHAAKP
VSWNVLESLQESFEAGDMATVDKIASELPESMQKSVNEAKAVA*
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mRNA from alignment at tig00000045_pilon:367918..369397-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6052.t1 ID=Ggra6052.t1|Name=Ggra6052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1480bp|location=Sequence derived from alignment at tig00000045_pilon:367918..369397- (Gracilaria gracilis GNS1m male)
ATGCGCTTAGGCGCTTCGAGATCGCTGCGCGGACTAGCAACGAAGACCGA
TGTACTCCCTCCTCTCAAGGTTGCTGTCACTGGAGCTGCCGGCCAAATCG
GCTATGCTCTTGTCATGCGTATCGCAAGGTATGTTTGTATCAATCCCTGA
ACCGAGCCAATATTTTTCGCCGCGAAGAAGCAATACTGCAATGGTGTTGC
GCTCACCGAAGATCACAGTTTATCCTTTCAATCACGAGCCGCACTTTGGA
TTTCTTCGTGCTGTCGAGCTCATTTTTCGGAACTAAGAGATTCCTTGAAA
GCACCGCTATGTGCGTGCTTTATAAAGCGCTATCGATCACCCTCAAAGTG
TTTCAATGAGCTGTATCTAACTTGTATTGTCTATGTCTGCGCCATTCCTC
TGTTAATAACACGTACTGTCTCGAAGCGGGGAAATGCTGGGCCCAGATCA
GCTTTTGGAGCTCAGTCTTATTGAGACTGAGGCGGGAATGTCACCACTGC
GCGGGGTTATGATGGAGCTTGAAGATGGTGCGTTCCCCTTGCTTTCCAAG
GTTACAGCGACTACGGACCTCAAGGAAGGCTTTGGCGATGCGTCATTTGC
AATGCTCATTGGGGCACAACCGCGCACGAAGGGCATGGAACGTTCCGATC
TCATGGCTGCTAATGCGAAGATTTTTGCGGAGCAAGGAAAGGCTCTGAAC
GAATCCGCAGCGCCAAACGCCAAGGTTCTTGTTGTTGGTAACCCTGCCAA
TACCAATGCGCTCATTGCGTCTGAGAATGCGCCGGATATGTGGCCGGAGC
AGTTCATTGCAATGACTCGTCTCGACCAGTCTCGCGCGAAAGCTTTATTG
GCTGAAAAAGCAGATGTTCCTGTCAAGGATGTTGATCGCGTGATTATCTG
GGGTAACCATTCGGCTACGCAGTACCCCGATCTTTCCCATGCTCGCGTTG
GCGGCAAATGGGCGAAGTCAATTGTCACTGATGAGAAGTGGATCAAGGAA
GACTTTATTCCGCGCGTTCAGAAACGAGGTGCGGAGGTTATAGGCGCACG
AGGCGCATCATCGGCAGCGTCGGCCGCGTCAGCTGCACTTGACACCGTGA
GAGACTTGCACCAAGGTTCGGACGAAGAGTGGCTGTCAAACGCTGTTGTA
TCTGATGGAAGCTACGGAATCACGAAGGGTATCTGGTACTCTGTTCCAAC
GGTGTGCAAGGGAGATTCTCACTTCCGACGCGTTCAGCGCCTGCCGATTG
ATGAGTTCTCAGCTCAAATGATGAGCAAGACCGAAAAAGAGCTGCTTGAT
GAGCGTGACTCAGTCCGCCATTTGTTGCCGGGACACGCGGCGAAACCAGT
ATCCTGGAACGTTTTGGAATCACTTCAGGAATCATTCGAGGCAGGTGATA
TGGCGACGGTAGATAAGATAGCTTCAGAATTGCCTGAATCCATGCAGAAG
AGCGTGAATGAAGCGAAGGCTGTGGCCTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:367918..369397-

>Ggra6052.t1 ID=Ggra6052.t1|Name=Ggra6052.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1182bp|location=Sequence derived from alignment at tig00000045_pilon:367918..369397- (Gracilaria gracilis GNS1m male)
ATGCGCTTAGGCGCTTCGAGATCGCTGCGCGGACTAGCAACGAAGACCGA
TGTACTCCCTCCTCTCAAGGTTGCTGTCACTGGAGCTGCCGGCCAAATCG
GCTATGCTCTTGTCATGCGTATCGCAAGCGGGGAAATGCTGGGCCCAGAT
CAGCTTTTGGAGCTCAGTCTTATTGAGACTGAGGCGGGAATGTCACCACT
GCGCGGGGTTATGATGGAGCTTGAAGATGGTGCGTTCCCCTTGCTTTCCA
AGGTTACAGCGACTACGGACCTCAAGGAAGGCTTTGGCGATGCGTCATTT
GCAATGCTCATTGGGGCACAACCGCGCACGAAGGGCATGGAACGTTCCGA
TCTCATGGCTGCTAATGCGAAGATTTTTGCGGAGCAAGGAAAGGCTCTGA
ACGAATCCGCAGCGCCAAACGCCAAGGTTCTTGTTGTTGGTAACCCTGCC
AATACCAATGCGCTCATTGCGTCTGAGAATGCGCCGGATATGTGGCCGGA
GCAGTTCATTGCAATGACTCGTCTCGACCAGTCTCGCGCGAAAGCTTTAT
TGGCTGAAAAAGCAGATGTTCCTGTCAAGGATGTTGATCGCGTGATTATC
TGGGGTAACCATTCGGCTACGCAGTACCCCGATCTTTCCCATGCTCGCGT
TGGCGGCAAATGGGCGAAGTCAATTGTCACTGATGAGAAGTGGATCAAGG
AAGACTTTATTCCGCGCGTTCAGAAACGAGGTGCGGAGGTTATAGGCGCA
CGAGGCGCATCATCGGCAGCGTCGGCCGCGTCAGCTGCACTTGACACCGT
GAGAGACTTGCACCAAGGTTCGGACGAAGAGTGGCTGTCAAACGCTGTTG
TATCTGATGGAAGCTACGGAATCACGAAGGGTATCTGGTACTCTGTTCCA
ACGGTGTGCAAGGGAGATTCTCACTTCCGACGCGTTCAGCGCCTGCCGAT
TGATGAGTTCTCAGCTCAAATGATGAGCAAGACCGAAAAAGAGCTGCTTG
ATGAGCGTGACTCAGTCCGCCATTTGTTGCCGGGACACGCGGCGAAACCA
GTATCCTGGAACGTTTTGGAATCACTTCAGGAATCATTCGAGGCAGGTGA
TATGGCGACGGTAGATAAGATAGCTTCAGAATTGCCTGAATCCATGCAGA
AGAGCGTGAATGAAGCGAAGGCTGTGGCCTAA
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