Ggra6051.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6051.t1
Unique NameGgra6051.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:366310..367557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog655981.L8G7F0
Preferred nameLST8
PFAMsWD40
Max annot lvl4751|Fungi
KEGG koko:K08266
KEGG Pathwayko04136,ko04138,ko04140,ko04150,ko04151,ko04714,map04136,map04138,map04140,map04150,map04151,map04714
GOsGO:0000139,GO:0001558,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005829,GO:0005886,GO:0006996,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0008047,GO:0008150,GO:0009893,GO:0009898,GO:0009987,GO:0010008,GO:0010562,GO:0010604,GO:0012505,GO:0016020,GO:0016043,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019887,GO:0019897,GO:0019898,GO:0023052,GO:0030029,GO:0030036,GO:0030234,GO:0030295,GO:0030950,GO:0030952,GO:0031090,GO:0031234,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031505,GO:0031929,GO:0031930,GO:0031931,GO:0031932,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033674,GO:0034399,GO:0035556,GO:0038201,GO:0040008,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043549,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045229,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051493,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098772,GO:0098791,GO:0098805
Evalue2.35e-22
EggNOG OGsKOG0315@1|root,KOG0315@2759|Eukaryota,38BGK@33154|Opisthokonta,3NTXM@4751|Fungi,3QMWX@4890|Ascomycota,20XF4@147548|Leotiomycetes
DescriptionWD domain, G-beta repeat
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6051Ggra6051Gracilaria gracilis GNS1m malegenetig00000045_pilon 366310..367557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6051.t1.start1Ggra6051.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 366310..366312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6051.t1.CDS1Ggra6051.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 366310..367557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6051.t1.exon1Ggra6051.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 366310..367557 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6051.t1.stop1Ggra6051.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 367555..367557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6051.t1Ggra6051.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 366310..367557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6051.t1 ID=Ggra6051.t1|Name=Ggra6051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=416bp
MNPFLLAVGGYDTNIRLFDSVNSEPVRMLQFCDQQVLRLAFSGSAPVPAD
APLFLAVAGSPSVAVYDVSTNHTSPNTFAIFQGHLEAVTAVGFEPNHTAF
VYSASEDGTLQTWLPKLATAPQSPYPSFHTHSLQHPMISAASAAFSLPAK
LINNKPDGTTVAIHDAAYYPPLDVFFTVDFLGRLRVWNHRTSKLRSEHIP
HPSRRNLQCIELSHDYSTLVMANFDGFVFIYDTRSVLACDKDRPNTKPLT
PLTIRANNSYIPRVKLSHSGALLVCTTRSGTIKIFPMSDILTDPALKKSA
TMNEIEEHSVMPVREFTGRPGWIWDASFIEDSEKFLFTCNSVKQVMLWHI
DNTGYSDELTGFPKPTVCLAVRERRLPPSHTNSGTSAALDRSQRTSLNGR
NTKCRDGLFNHGSVT*
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spliced messenger RNA

>Ggra6051.t1 ID=Ggra6051.t1|Name=Ggra6051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000045_pilon:366310..367557+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCCTTCCTGCTGGCCGTTGGTGGTTACGATACCAACATTCGTCT
ATTTGACTCCGTCAACAGTGAGCCCGTCCGCATGTTGCAGTTCTGTGATC
AACAGGTTTTGAGACTCGCCTTTTCAGGCTCCGCTCCTGTTCCCGCCGAC
GCTCCATTATTTCTAGCTGTTGCAGGCTCCCCAAGCGTAGCCGTGTACGA
TGTGTCTACCAATCACACCTCTCCCAACACGTTTGCCATCTTCCAGGGTC
ATCTGGAAGCTGTCACCGCTGTTGGATTCGAACCCAACCACACTGCCTTT
GTATACTCAGCCTCGGAGGATGGTACATTACAAACATGGCTCCCAAAACT
TGCTACCGCCCCACAATCCCCTTATCCCAGCTTCCATACACACTCTCTTC
AACATCCCATGATTTCTGCCGCCTCTGCTGCCTTTTCTCTGCCGGCCAAA
CTCATCAACAACAAACCGGATGGCACCACTGTCGCCATTCACGACGCTGC
GTATTATCCTCCGCTCGATGTGTTTTTCACCGTCGACTTTCTTGGTCGTT
TGCGCGTGTGGAATCATCGAACTTCCAAATTGAGAAGCGAACATATTCCA
CATCCAAGTCGTCGAAATCTGCAATGCATCGAACTAAGTCATGACTATTC
CACTCTCGTCATGGCTAATTTTGATGGTTTCGTGTTCATCTACGATACTC
GAAGTGTACTTGCCTGCGATAAGGATCGACCAAATACTAAACCTCTCACT
CCACTAACAATTCGAGCCAACAATTCGTACATCCCGCGTGTAAAACTCAG
CCATAGTGGTGCTCTTCTTGTGTGTACCACGCGATCGGGCACCATCAAGA
TCTTTCCCATGTCTGATATTCTTACTGATCCAGCTTTGAAAAAATCCGCT
ACTATGAACGAAATCGAGGAGCATTCCGTCATGCCGGTCCGCGAATTCAC
AGGTCGTCCAGGCTGGATTTGGGATGCATCCTTCATTGAGGACAGCGAAA
AGTTTCTGTTCACCTGTAATAGCGTTAAACAAGTCATGTTGTGGCACATC
GATAATACGGGATACAGCGATGAGCTTACCGGTTTCCCCAAACCCACCGT
ATGTCTAGCCGTTCGTGAACGCAGACTACCCCCGTCACACACCAATTCTG
GCACGTCTGCTGCTTTGGACAGATCGCAACGTACATCGCTTAATGGTCGA
AATACCAAATGTCGTGATGGTTTGTTTAACCACGGTTCTGTTACATGA
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protein sequence of Ggra6051.t1

>Ggra6051.t1 ID=Ggra6051.t1|Name=Ggra6051.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=416bp
MNPFLLAVGGYDTNIRLFDSVNSEPVRMLQFCDQQVLRLAFSGSAPVPAD
APLFLAVAGSPSVAVYDVSTNHTSPNTFAIFQGHLEAVTAVGFEPNHTAF
VYSASEDGTLQTWLPKLATAPQSPYPSFHTHSLQHPMISAASAAFSLPAK
LINNKPDGTTVAIHDAAYYPPLDVFFTVDFLGRLRVWNHRTSKLRSEHIP
HPSRRNLQCIELSHDYSTLVMANFDGFVFIYDTRSVLACDKDRPNTKPLT
PLTIRANNSYIPRVKLSHSGALLVCTTRSGTIKIFPMSDILTDPALKKSA
TMNEIEEHSVMPVREFTGRPGWIWDASFIEDSEKFLFTCNSVKQVMLWHI
DNTGYSDELTGFPKPTVCLAVRERRLPPSHTNSGTSAALDRSQRTSLNGR
NTKCRDGLFNHGSVT*
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mRNA from alignment at tig00000045_pilon:366310..367557+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6051.t1 ID=Ggra6051.t1|Name=Ggra6051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000045_pilon:366310..367557+ (Gracilaria gracilis GNS1m male)
ATGAATCCCTTCCTGCTGGCCGTTGGTGGTTACGATACCAACATTCGTCT
ATTTGACTCCGTCAACAGTGAGCCCGTCCGCATGTTGCAGTTCTGTGATC
AACAGGTTTTGAGACTCGCCTTTTCAGGCTCCGCTCCTGTTCCCGCCGAC
GCTCCATTATTTCTAGCTGTTGCAGGCTCCCCAAGCGTAGCCGTGTACGA
TGTGTCTACCAATCACACCTCTCCCAACACGTTTGCCATCTTCCAGGGTC
ATCTGGAAGCTGTCACCGCTGTTGGATTCGAACCCAACCACACTGCCTTT
GTATACTCAGCCTCGGAGGATGGTACATTACAAACATGGCTCCCAAAACT
TGCTACCGCCCCACAATCCCCTTATCCCAGCTTCCATACACACTCTCTTC
AACATCCCATGATTTCTGCCGCCTCTGCTGCCTTTTCTCTGCCGGCCAAA
CTCATCAACAACAAACCGGATGGCACCACTGTCGCCATTCACGACGCTGC
GTATTATCCTCCGCTCGATGTGTTTTTCACCGTCGACTTTCTTGGTCGTT
TGCGCGTGTGGAATCATCGAACTTCCAAATTGAGAAGCGAACATATTCCA
CATCCAAGTCGTCGAAATCTGCAATGCATCGAACTAAGTCATGACTATTC
CACTCTCGTCATGGCTAATTTTGATGGTTTCGTGTTCATCTACGATACTC
GAAGTGTACTTGCCTGCGATAAGGATCGACCAAATACTAAACCTCTCACT
CCACTAACAATTCGAGCCAACAATTCGTACATCCCGCGTGTAAAACTCAG
CCATAGTGGTGCTCTTCTTGTGTGTACCACGCGATCGGGCACCATCAAGA
TCTTTCCCATGTCTGATATTCTTACTGATCCAGCTTTGAAAAAATCCGCT
ACTATGAACGAAATCGAGGAGCATTCCGTCATGCCGGTCCGCGAATTCAC
AGGTCGTCCAGGCTGGATTTGGGATGCATCCTTCATTGAGGACAGCGAAA
AGTTTCTGTTCACCTGTAATAGCGTTAAACAAGTCATGTTGTGGCACATC
GATAATACGGGATACAGCGATGAGCTTACCGGTTTCCCCAAACCCACCGT
ATGTCTAGCCGTTCGTGAACGCAGACTACCCCCGTCACACACCAATTCTG
GCACGTCTGCTGCTTTGGACAGATCGCAACGTACATCGCTTAATGGTCGA
AATACCAAATGTCGTGATGGTTTGTTTAACCACGGTTCTGTTACATGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:366310..367557+

>Ggra6051.t1 ID=Ggra6051.t1|Name=Ggra6051.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00000045_pilon:366310..367557+ (Gracilaria gracilis GNS1m male)
ATGAATCCCTTCCTGCTGGCCGTTGGTGGTTACGATACCAACATTCGTCT
ATTTGACTCCGTCAACAGTGAGCCCGTCCGCATGTTGCAGTTCTGTGATC
AACAGGTTTTGAGACTCGCCTTTTCAGGCTCCGCTCCTGTTCCCGCCGAC
GCTCCATTATTTCTAGCTGTTGCAGGCTCCCCAAGCGTAGCCGTGTACGA
TGTGTCTACCAATCACACCTCTCCCAACACGTTTGCCATCTTCCAGGGTC
ATCTGGAAGCTGTCACCGCTGTTGGATTCGAACCCAACCACACTGCCTTT
GTATACTCAGCCTCGGAGGATGGTACATTACAAACATGGCTCCCAAAACT
TGCTACCGCCCCACAATCCCCTTATCCCAGCTTCCATACACACTCTCTTC
AACATCCCATGATTTCTGCCGCCTCTGCTGCCTTTTCTCTGCCGGCCAAA
CTCATCAACAACAAACCGGATGGCACCACTGTCGCCATTCACGACGCTGC
GTATTATCCTCCGCTCGATGTGTTTTTCACCGTCGACTTTCTTGGTCGTT
TGCGCGTGTGGAATCATCGAACTTCCAAATTGAGAAGCGAACATATTCCA
CATCCAAGTCGTCGAAATCTGCAATGCATCGAACTAAGTCATGACTATTC
CACTCTCGTCATGGCTAATTTTGATGGTTTCGTGTTCATCTACGATACTC
GAAGTGTACTTGCCTGCGATAAGGATCGACCAAATACTAAACCTCTCACT
CCACTAACAATTCGAGCCAACAATTCGTACATCCCGCGTGTAAAACTCAG
CCATAGTGGTGCTCTTCTTGTGTGTACCACGCGATCGGGCACCATCAAGA
TCTTTCCCATGTCTGATATTCTTACTGATCCAGCTTTGAAAAAATCCGCT
ACTATGAACGAAATCGAGGAGCATTCCGTCATGCCGGTCCGCGAATTCAC
AGGTCGTCCAGGCTGGATTTGGGATGCATCCTTCATTGAGGACAGCGAAA
AGTTTCTGTTCACCTGTAATAGCGTTAAACAAGTCATGTTGTGGCACATC
GATAATACGGGATACAGCGATGAGCTTACCGGTTTCCCCAAACCCACCGT
ATGTCTAGCCGTTCGTGAACGCAGACTACCCCCGTCACACACCAATTCTG
GCACGTCTGCTGCTTTGGACAGATCGCAACGTACATCGCTTAATGGTCGA
AATACCAAATGTCGTGATGGTTTGTTTAACCACGGTTCTGTTACATGA
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