Ggra6047.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6047.t1
Unique NameGgra6047.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:361464..362603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4787.PITG_10972T0
PFAMsERp29,Thioredoxin
Max annot lvl4776|Peronosporales
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Evalue2.07e-14
EggNOG OGsCOG0526@1|root,KOG0191@2759|Eukaryota,3Q755@4776|Peronosporales
EC5.3.4.1
DescriptionEndoplasmic reticulum protein ERp29, C-terminal domain
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6047Ggra6047Gracilaria gracilis GNS1m malegenetig00000045_pilon 361464..362603 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6047.t1.stop1Ggra6047.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 361464..361466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6047.t1.CDS1Ggra6047.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 361464..362603 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6047.t1.exon1Ggra6047.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 361464..362603 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6047.t1.start1Ggra6047.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 362601..362603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6047.t1Ggra6047.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 361464..362603 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6047.t1 ID=Ggra6047.t1|Name=Ggra6047.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MAWSAAPPLWLLMSLLLLLAFAACINAHYVDTLTYEKFTASLGSHPLLLF
LTVSWCDHCRALSSEIKAIAKAVRNDPNVLVARADADEEPAIAQKLSVRG
FPTILFFPHGYDLHDKASHPMHFSDWRWAELIAEFVNNHTSDSTIHLTPR
DAFLKWRKKHPYNLGSSASEQPIQDLAEEELDAVYDDGISKMGIREPTPL
TAHNFDSYVYAKADHRYMVLFYESDDPFIKDIILQWRQASSAFTGADNVT
IAFVDVTADQSLISRFQLHDTPSCLYFPACEQADMPQCKEPMPCSDDLDD
TENIIQFISDRVMYEIGIEPLDVEKKGATYSLTEEEYQKMKENGVLFANE
EEHAEQIRHMYEERRAAKQTAEETDKDEL*
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spliced messenger RNA

>Ggra6047.t1 ID=Ggra6047.t1|Name=Ggra6047.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000045_pilon:361464..362603- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTGGTCTGCCGCACCTCCGCTCTGGCTGCTCATGTCTCTTCTTCT
CCTTCTCGCCTTTGCTGCATGCATCAATGCCCATTACGTGGATACGCTAA
CCTATGAAAAGTTCACCGCCTCCTTGGGTTCCCACCCGCTATTGCTGTTC
CTCACCGTCTCTTGGTGTGATCATTGCCGTGCCTTGTCGTCCGAGATCAA
AGCGATCGCTAAGGCCGTGCGAAATGATCCCAATGTGCTCGTTGCGCGCG
CCGATGCCGATGAAGAACCCGCCATAGCCCAAAAACTCAGCGTTCGTGGC
TTTCCTACCATCCTTTTCTTCCCGCACGGTTATGACCTGCACGACAAAGC
TTCGCACCCCATGCACTTTTCTGACTGGCGTTGGGCGGAGCTTATTGCTG
AATTTGTCAATAACCATACTAGTGACTCCACCATTCATCTCACTCCACGC
GATGCCTTTCTCAAGTGGCGAAAGAAGCATCCGTATAACTTGGGTTCAAG
TGCTTCAGAGCAACCGATCCAAGATTTGGCCGAGGAAGAGCTTGACGCTG
TCTATGATGATGGGATCAGCAAGATGGGAATTCGAGAACCAACTCCGTTG
ACAGCTCACAATTTTGACTCGTATGTTTACGCGAAAGCTGACCACCGCTA
CATGGTATTATTCTACGAAAGCGACGACCCCTTCATCAAAGACATCATCC
TTCAATGGAGACAGGCTAGCAGTGCGTTTACAGGTGCCGATAATGTTACT
ATTGCATTTGTAGATGTCACTGCCGATCAGTCTTTGATAAGTCGTTTTCA
ACTACATGACACCCCGTCCTGCCTCTACTTCCCGGCATGCGAACAGGCTG
ATATGCCGCAATGCAAGGAACCCATGCCCTGCAGCGATGATCTTGATGAC
ACCGAGAATATCATCCAGTTCATTTCTGACCGCGTCATGTATGAAATAGG
AATTGAACCACTTGACGTGGAGAAGAAAGGGGCCACCTACAGCTTGACCG
AAGAGGAGTACCAAAAGATGAAAGAGAACGGTGTCTTGTTCGCCAACGAG
GAAGAGCATGCCGAGCAAATCAGGCACATGTATGAAGAGCGGCGGGCCGC
GAAGCAGACAGCGGAAGAAACCGACAAGGATGAGCTGTGA
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protein sequence of Ggra6047.t1

>Ggra6047.t1 ID=Ggra6047.t1|Name=Ggra6047.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MAWSAAPPLWLLMSLLLLLAFAACINAHYVDTLTYEKFTASLGSHPLLLF
LTVSWCDHCRALSSEIKAIAKAVRNDPNVLVARADADEEPAIAQKLSVRG
FPTILFFPHGYDLHDKASHPMHFSDWRWAELIAEFVNNHTSDSTIHLTPR
DAFLKWRKKHPYNLGSSASEQPIQDLAEEELDAVYDDGISKMGIREPTPL
TAHNFDSYVYAKADHRYMVLFYESDDPFIKDIILQWRQASSAFTGADNVT
IAFVDVTADQSLISRFQLHDTPSCLYFPACEQADMPQCKEPMPCSDDLDD
TENIIQFISDRVMYEIGIEPLDVEKKGATYSLTEEEYQKMKENGVLFANE
EEHAEQIRHMYEERRAAKQTAEETDKDEL*
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mRNA from alignment at tig00000045_pilon:361464..362603-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6047.t1 ID=Ggra6047.t1|Name=Ggra6047.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000045_pilon:361464..362603- (Gracilaria gracilis GNS1m male)
ATGGCTTGGTCTGCCGCACCTCCGCTCTGGCTGCTCATGTCTCTTCTTCT
CCTTCTCGCCTTTGCTGCATGCATCAATGCCCATTACGTGGATACGCTAA
CCTATGAAAAGTTCACCGCCTCCTTGGGTTCCCACCCGCTATTGCTGTTC
CTCACCGTCTCTTGGTGTGATCATTGCCGTGCCTTGTCGTCCGAGATCAA
AGCGATCGCTAAGGCCGTGCGAAATGATCCCAATGTGCTCGTTGCGCGCG
CCGATGCCGATGAAGAACCCGCCATAGCCCAAAAACTCAGCGTTCGTGGC
TTTCCTACCATCCTTTTCTTCCCGCACGGTTATGACCTGCACGACAAAGC
TTCGCACCCCATGCACTTTTCTGACTGGCGTTGGGCGGAGCTTATTGCTG
AATTTGTCAATAACCATACTAGTGACTCCACCATTCATCTCACTCCACGC
GATGCCTTTCTCAAGTGGCGAAAGAAGCATCCGTATAACTTGGGTTCAAG
TGCTTCAGAGCAACCGATCCAAGATTTGGCCGAGGAAGAGCTTGACGCTG
TCTATGATGATGGGATCAGCAAGATGGGAATTCGAGAACCAACTCCGTTG
ACAGCTCACAATTTTGACTCGTATGTTTACGCGAAAGCTGACCACCGCTA
CATGGTATTATTCTACGAAAGCGACGACCCCTTCATCAAAGACATCATCC
TTCAATGGAGACAGGCTAGCAGTGCGTTTACAGGTGCCGATAATGTTACT
ATTGCATTTGTAGATGTCACTGCCGATCAGTCTTTGATAAGTCGTTTTCA
ACTACATGACACCCCGTCCTGCCTCTACTTCCCGGCATGCGAACAGGCTG
ATATGCCGCAATGCAAGGAACCCATGCCCTGCAGCGATGATCTTGATGAC
ACCGAGAATATCATCCAGTTCATTTCTGACCGCGTCATGTATGAAATAGG
AATTGAACCACTTGACGTGGAGAAGAAAGGGGCCACCTACAGCTTGACCG
AAGAGGAGTACCAAAAGATGAAAGAGAACGGTGTCTTGTTCGCCAACGAG
GAAGAGCATGCCGAGCAAATCAGGCACATGTATGAAGAGCGGCGGGCCGC
GAAGCAGACAGCGGAAGAAACCGACAAGGATGAGCTGTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:361464..362603-

>Ggra6047.t1 ID=Ggra6047.t1|Name=Ggra6047.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000045_pilon:361464..362603- (Gracilaria gracilis GNS1m male)
ATGGCTTGGTCTGCCGCACCTCCGCTCTGGCTGCTCATGTCTCTTCTTCT
CCTTCTCGCCTTTGCTGCATGCATCAATGCCCATTACGTGGATACGCTAA
CCTATGAAAAGTTCACCGCCTCCTTGGGTTCCCACCCGCTATTGCTGTTC
CTCACCGTCTCTTGGTGTGATCATTGCCGTGCCTTGTCGTCCGAGATCAA
AGCGATCGCTAAGGCCGTGCGAAATGATCCCAATGTGCTCGTTGCGCGCG
CCGATGCCGATGAAGAACCCGCCATAGCCCAAAAACTCAGCGTTCGTGGC
TTTCCTACCATCCTTTTCTTCCCGCACGGTTATGACCTGCACGACAAAGC
TTCGCACCCCATGCACTTTTCTGACTGGCGTTGGGCGGAGCTTATTGCTG
AATTTGTCAATAACCATACTAGTGACTCCACCATTCATCTCACTCCACGC
GATGCCTTTCTCAAGTGGCGAAAGAAGCATCCGTATAACTTGGGTTCAAG
TGCTTCAGAGCAACCGATCCAAGATTTGGCCGAGGAAGAGCTTGACGCTG
TCTATGATGATGGGATCAGCAAGATGGGAATTCGAGAACCAACTCCGTTG
ACAGCTCACAATTTTGACTCGTATGTTTACGCGAAAGCTGACCACCGCTA
CATGGTATTATTCTACGAAAGCGACGACCCCTTCATCAAAGACATCATCC
TTCAATGGAGACAGGCTAGCAGTGCGTTTACAGGTGCCGATAATGTTACT
ATTGCATTTGTAGATGTCACTGCCGATCAGTCTTTGATAAGTCGTTTTCA
ACTACATGACACCCCGTCCTGCCTCTACTTCCCGGCATGCGAACAGGCTG
ATATGCCGCAATGCAAGGAACCCATGCCCTGCAGCGATGATCTTGATGAC
ACCGAGAATATCATCCAGTTCATTTCTGACCGCGTCATGTATGAAATAGG
AATTGAACCACTTGACGTGGAGAAGAAAGGGGCCACCTACAGCTTGACCG
AAGAGGAGTACCAAAAGATGAAAGAGAACGGTGTCTTGTTCGCCAACGAG
GAAGAGCATGCCGAGCAAATCAGGCACATGTATGAAGAGCGGCGGGCCGC
GAAGCAGACAGCGGAAGAAACCGACAAGGATGAGCTGTGA
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