Ggra6046.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6046.t2
Unique NameGgra6046.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length620
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:351937..353796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN326CT
PFAMsDEK_C,DSPc,LRR_8,Pkinase,Rhodanese
Max annot lvl2759|Eukaryota
KEGG koko:K01104,ko:K04459,ko:K14819
KEGG Pathwayko04010,map04010
GOsGO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004721,GO:0005575,GO:0005576,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0008138,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032879,GO:0033673,GO:0036211,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042578,GO:0043086,GO:0043170,GO:0043327,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051270,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0140096,GO:1901564,GO:1902531,GO:1902532
Evalue3.29e-12
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota
EC3.1.3.16,3.1.3.48
Descriptionprotein tyrosine/serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6046Ggra6046Gracilaria gracilis GNS1m malegenetig00000045_pilon 351937..353796 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t2.stop1Ggra6046.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 351937..351939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t2.CDS1Ggra6046.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 351937..353796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t2.exon1Ggra6046.t2.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 351937..353796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t2.start1Ggra6046.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 353794..353796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t2Ggra6046.t2Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 351937..353796 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6046.t2 ID=Ggra6046.t2|Name=Ggra6046.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=620bp
MHAAPAAATARSSRSGAAGSVAGACAAASAASCCTLARGGAAHSGMAAVA
ARSARVSIAPAAPPSCGRGRCCCGRGRRCASCSAALCCCTSCARATCSRS
ASGVARGNVGSRALPPAAVLPPVACASTARSAARSVVVVGAIDARCARRR
LRVVRAVRRREWVSSSTALALAAATARRRGRVCVRLILHLTRSFHVSLGC
SCRIHAHAHHATTQRPPRRSIFSRRSIFFFVVILRLLLLLLLLLLPPPPP
PVYQIVMTAASAAAATAVAPPPTSAPSSVLSVAPAVALALARASPPAVLL
DARTPALYELERLRGALQHAPPHIPSRIVIVYDSGSDRLPQPLRPTTRAL
CALLRLAEQRPTGFALALLAGGLPAAAALDADAVTRLDRAALQRVVRVLG
AAGRRRLAAGVRAHFGAALLPPAQVLPWLYVGSARFASAPFLRAKRVSHV
LCVSHEHARAGGASAEAASLGVHWHALHMHDRADYDIRQHFARVVALLTH
VKAAHGVLLLHCVAGVSRSVACVLAFLLWQGYRLADAWALVSAARSCAAP
NDGFWTQLRRWEAELAHMRACEPCAARFRAELLALRRLYMTAALDAPHVD
GDGDSDSDSDCDCDCDSDA*
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spliced messenger RNA

>Ggra6046.t2 ID=Ggra6046.t2|Name=Ggra6046.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000045_pilon:351937..353796- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCGGCGCCGGCCGCCGCCACCGCGCGCAGCTCGCGCAGTGGCGC
GGCCGGTAGCGTGGCGGGCGCGTGCGCGGCCGCCAGCGCCGCCAGCTGCT
GCACGCTGGCGCGCGGCGGCGCGGCGCATAGCGGCATGGCCGCCGTGGCG
GCGCGTAGCGCGCGCGTCAGTATCGCACCGGCTGCGCCGCCGTCGTGCGG
CCGCGGCCGCTGCTGCTGCGGGCGCGGCCGCCGCTGCGCAAGCTGCAGCG
CGGCGTTGTGTTGCTGCACCAGCTGCGCGCGCGCCACGTGCAGCCGCAGC
GCCAGCGGCGTGGCGCGCGGTAACGTCGGCAGCCGCGCGCTGCCGCCGGC
GGCGGTGCTGCCGCCCGTCGCGTGCGCGTCCACTGCGCGCAGCGCGGCGC
GTAGCGTCGTCGTCGTCGGCGCCATTGATGCGCGATGCGCGCGCCGTCGC
CTCCGCGTCGTGCGCGCTGTTCGCCGTCGAGAATGGGTGTCGTCGTCCAC
GGCGCTGGCGCTGGCGGCGGCGACAGCGCGGCGGCGTGGACGCGTGTGCG
TGCGCCTCATATTACACCTCACGCGCAGCTTCCATGTGTCTCTCGGCTGC
AGCTGCCGCATCCATGCGCATGCGCATCATGCGACCACGCAGCGCCCGCC
ACGCCGCTCCATCTTCTCACGCCGCTCCATCTTCTTCTTCGTCGTCATCC
TCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCCG
CCTGTGTATCAAATCGTCATGACGGCTGCCTCGGCCGCCGCCGCCACGGC
CGTTGCGCCGCCGCCCACATCCGCACCGTCCAGCGTGCTCAGCGTGGCGC
CCGCCGTAGCGCTGGCGCTGGCGCGCGCCTCGCCGCCAGCCGTGCTGCTG
GACGCGCGCACGCCGGCGCTGTACGAGCTGGAGCGGCTGCGCGGCGCGCT
ACAGCACGCGCCGCCTCACATCCCGTCGCGCATCGTGATCGTGTACGACA
GCGGCAGCGACCGTCTGCCGCAGCCGCTGCGCCCCACCACGCGCGCGCTG
TGCGCGCTGCTGCGGCTGGCAGAGCAGCGTCCCACCGGCTTTGCGCTGGC
GCTGCTGGCAGGCGGGCTGCCCGCCGCGGCGGCGCTGGACGCCGACGCCG
TCACGCGCCTCGACCGCGCCGCGTTGCAGCGCGTGGTGCGCGTGCTTGGC
GCCGCCGGCCGCCGCCGACTGGCTGCTGGCGTGCGCGCGCACTTTGGCGC
CGCGTTGCTGCCGCCCGCGCAGGTGCTGCCGTGGCTGTACGTGGGGTCGG
CGCGCTTTGCGTCCGCGCCCTTTCTGCGCGCCAAGCGCGTGTCGCACGTG
CTGTGCGTGAGCCACGAGCACGCGCGCGCAGGCGGCGCGTCAGCCGAAGC
CGCCTCGCTCGGCGTGCACTGGCACGCGCTGCACATGCACGACCGCGCCG
ACTACGATATCCGGCAGCACTTTGCGCGCGTGGTGGCGCTGCTCACGCAC
GTCAAGGCGGCGCACGGCGTGCTGCTGCTGCACTGCGTGGCCGGCGTGAG
TCGCAGCGTGGCGTGTGTGCTGGCGTTCTTGCTGTGGCAGGGCTATCGCC
TCGCCGACGCGTGGGCGCTCGTCAGCGCGGCGCGTAGCTGCGCCGCGCCG
AACGACGGCTTTTGGACGCAGCTGCGTCGCTGGGAGGCTGAACTGGCGCA
TATGAGGGCGTGTGAGCCGTGTGCGGCGCGCTTCAGGGCCGAGCTGCTGG
CGCTGCGGCGGCTGTACATGACTGCTGCGCTGGATGCGCCCCACGTCGAC
GGCGACGGCGACAGCGACAGCGACAGCGACTGCGACTGCGACTGCGACAG
TGACGCGTAG
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protein sequence of Ggra6046.t2

>Ggra6046.t2 ID=Ggra6046.t2|Name=Ggra6046.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=620bp
MHAAPAAATARSSRSGAAGSVAGACAAASAASCCTLARGGAAHSGMAAVA
ARSARVSIAPAAPPSCGRGRCCCGRGRRCASCSAALCCCTSCARATCSRS
ASGVARGNVGSRALPPAAVLPPVACASTARSAARSVVVVGAIDARCARRR
LRVVRAVRRREWVSSSTALALAAATARRRGRVCVRLILHLTRSFHVSLGC
SCRIHAHAHHATTQRPPRRSIFSRRSIFFFVVILRLLLLLLLLLLPPPPP
PVYQIVMTAASAAAATAVAPPPTSAPSSVLSVAPAVALALARASPPAVLL
DARTPALYELERLRGALQHAPPHIPSRIVIVYDSGSDRLPQPLRPTTRAL
CALLRLAEQRPTGFALALLAGGLPAAAALDADAVTRLDRAALQRVVRVLG
AAGRRRLAAGVRAHFGAALLPPAQVLPWLYVGSARFASAPFLRAKRVSHV
LCVSHEHARAGGASAEAASLGVHWHALHMHDRADYDIRQHFARVVALLTH
VKAAHGVLLLHCVAGVSRSVACVLAFLLWQGYRLADAWALVSAARSCAAP
NDGFWTQLRRWEAELAHMRACEPCAARFRAELLALRRLYMTAALDAPHVD
GDGDSDSDSDCDCDCDSDA*
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mRNA from alignment at tig00000045_pilon:351937..353796-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6046.t2 ID=Ggra6046.t2|Name=Ggra6046.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000045_pilon:351937..353796- (Gracilaria gracilis GNS1m male)
ATGCACGCGGCGCCGGCCGCCGCCACCGCGCGCAGCTCGCGCAGTGGCGC
GGCCGGTAGCGTGGCGGGCGCGTGCGCGGCCGCCAGCGCCGCCAGCTGCT
GCACGCTGGCGCGCGGCGGCGCGGCGCATAGCGGCATGGCCGCCGTGGCG
GCGCGTAGCGCGCGCGTCAGTATCGCACCGGCTGCGCCGCCGTCGTGCGG
CCGCGGCCGCTGCTGCTGCGGGCGCGGCCGCCGCTGCGCAAGCTGCAGCG
CGGCGTTGTGTTGCTGCACCAGCTGCGCGCGCGCCACGTGCAGCCGCAGC
GCCAGCGGCGTGGCGCGCGGTAACGTCGGCAGCCGCGCGCTGCCGCCGGC
GGCGGTGCTGCCGCCCGTCGCGTGCGCGTCCACTGCGCGCAGCGCGGCGC
GTAGCGTCGTCGTCGTCGGCGCCATTGATGCGCGATGCGCGCGCCGTCGC
CTCCGCGTCGTGCGCGCTGTTCGCCGTCGAGAATGGGTGTCGTCGTCCAC
GGCGCTGGCGCTGGCGGCGGCGACAGCGCGGCGGCGTGGACGCGTGTGCG
TGCGCCTCATATTACACCTCACGCGCAGCTTCCATGTGTCTCTCGGCTGC
AGCTGCCGCATCCATGCGCATGCGCATCATGCGACCACGCAGCGCCCGCC
ACGCCGCTCCATCTTCTCACGCCGCTCCATCTTCTTCTTCGTCGTCATCC
TCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCCG
CCTGTGTATCAAATCGTCATGACGGCTGCCTCGGCCGCCGCCGCCACGGC
CGTTGCGCCGCCGCCCACATCCGCACCGTCCAGCGTGCTCAGCGTGGCGC
CCGCCGTAGCGCTGGCGCTGGCGCGCGCCTCGCCGCCAGCCGTGCTGCTG
GACGCGCGCACGCCGGCGCTGTACGAGCTGGAGCGGCTGCGCGGCGCGCT
ACAGCACGCGCCGCCTCACATCCCGTCGCGCATCGTGATCGTGTACGACA
GCGGCAGCGACCGTCTGCCGCAGCCGCTGCGCCCCACCACGCGCGCGCTG
TGCGCGCTGCTGCGGCTGGCAGAGCAGCGTCCCACCGGCTTTGCGCTGGC
GCTGCTGGCAGGCGGGCTGCCCGCCGCGGCGGCGCTGGACGCCGACGCCG
TCACGCGCCTCGACCGCGCCGCGTTGCAGCGCGTGGTGCGCGTGCTTGGC
GCCGCCGGCCGCCGCCGACTGGCTGCTGGCGTGCGCGCGCACTTTGGCGC
CGCGTTGCTGCCGCCCGCGCAGGTGCTGCCGTGGCTGTACGTGGGGTCGG
CGCGCTTTGCGTCCGCGCCCTTTCTGCGCGCCAAGCGCGTGTCGCACGTG
CTGTGCGTGAGCCACGAGCACGCGCGCGCAGGCGGCGCGTCAGCCGAAGC
CGCCTCGCTCGGCGTGCACTGGCACGCGCTGCACATGCACGACCGCGCCG
ACTACGATATCCGGCAGCACTTTGCGCGCGTGGTGGCGCTGCTCACGCAC
GTCAAGGCGGCGCACGGCGTGCTGCTGCTGCACTGCGTGGCCGGCGTGAG
TCGCAGCGTGGCGTGTGTGCTGGCGTTCTTGCTGTGGCAGGGCTATCGCC
TCGCCGACGCGTGGGCGCTCGTCAGCGCGGCGCGTAGCTGCGCCGCGCCG
AACGACGGCTTTTGGACGCAGCTGCGTCGCTGGGAGGCTGAACTGGCGCA
TATGAGGGCGTGTGAGCCGTGTGCGGCGCGCTTCAGGGCCGAGCTGCTGG
CGCTGCGGCGGCTGTACATGACTGCTGCGCTGGATGCGCCCCACGTCGAC
GGCGACGGCGACAGCGACAGCGACAGCGACTGCGACTGCGACTGCGACAG
TGACGCGTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:351937..353796-

>Ggra6046.t2 ID=Ggra6046.t2|Name=Ggra6046.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1860bp|location=Sequence derived from alignment at tig00000045_pilon:351937..353796- (Gracilaria gracilis GNS1m male)
ATGCACGCGGCGCCGGCCGCCGCCACCGCGCGCAGCTCGCGCAGTGGCGC
GGCCGGTAGCGTGGCGGGCGCGTGCGCGGCCGCCAGCGCCGCCAGCTGCT
GCACGCTGGCGCGCGGCGGCGCGGCGCATAGCGGCATGGCCGCCGTGGCG
GCGCGTAGCGCGCGCGTCAGTATCGCACCGGCTGCGCCGCCGTCGTGCGG
CCGCGGCCGCTGCTGCTGCGGGCGCGGCCGCCGCTGCGCAAGCTGCAGCG
CGGCGTTGTGTTGCTGCACCAGCTGCGCGCGCGCCACGTGCAGCCGCAGC
GCCAGCGGCGTGGCGCGCGGTAACGTCGGCAGCCGCGCGCTGCCGCCGGC
GGCGGTGCTGCCGCCCGTCGCGTGCGCGTCCACTGCGCGCAGCGCGGCGC
GTAGCGTCGTCGTCGTCGGCGCCATTGATGCGCGATGCGCGCGCCGTCGC
CTCCGCGTCGTGCGCGCTGTTCGCCGTCGAGAATGGGTGTCGTCGTCCAC
GGCGCTGGCGCTGGCGGCGGCGACAGCGCGGCGGCGTGGACGCGTGTGCG
TGCGCCTCATATTACACCTCACGCGCAGCTTCCATGTGTCTCTCGGCTGC
AGCTGCCGCATCCATGCGCATGCGCATCATGCGACCACGCAGCGCCCGCC
ACGCCGCTCCATCTTCTCACGCCGCTCCATCTTCTTCTTCGTCGTCATCC
TCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCCG
CCTGTGTATCAAATCGTCATGACGGCTGCCTCGGCCGCCGCCGCCACGGC
CGTTGCGCCGCCGCCCACATCCGCACCGTCCAGCGTGCTCAGCGTGGCGC
CCGCCGTAGCGCTGGCGCTGGCGCGCGCCTCGCCGCCAGCCGTGCTGCTG
GACGCGCGCACGCCGGCGCTGTACGAGCTGGAGCGGCTGCGCGGCGCGCT
ACAGCACGCGCCGCCTCACATCCCGTCGCGCATCGTGATCGTGTACGACA
GCGGCAGCGACCGTCTGCCGCAGCCGCTGCGCCCCACCACGCGCGCGCTG
TGCGCGCTGCTGCGGCTGGCAGAGCAGCGTCCCACCGGCTTTGCGCTGGC
GCTGCTGGCAGGCGGGCTGCCCGCCGCGGCGGCGCTGGACGCCGACGCCG
TCACGCGCCTCGACCGCGCCGCGTTGCAGCGCGTGGTGCGCGTGCTTGGC
GCCGCCGGCCGCCGCCGACTGGCTGCTGGCGTGCGCGCGCACTTTGGCGC
CGCGTTGCTGCCGCCCGCGCAGGTGCTGCCGTGGCTGTACGTGGGGTCGG
CGCGCTTTGCGTCCGCGCCCTTTCTGCGCGCCAAGCGCGTGTCGCACGTG
CTGTGCGTGAGCCACGAGCACGCGCGCGCAGGCGGCGCGTCAGCCGAAGC
CGCCTCGCTCGGCGTGCACTGGCACGCGCTGCACATGCACGACCGCGCCG
ACTACGATATCCGGCAGCACTTTGCGCGCGTGGTGGCGCTGCTCACGCAC
GTCAAGGCGGCGCACGGCGTGCTGCTGCTGCACTGCGTGGCCGGCGTGAG
TCGCAGCGTGGCGTGTGTGCTGGCGTTCTTGCTGTGGCAGGGCTATCGCC
TCGCCGACGCGTGGGCGCTCGTCAGCGCGGCGCGTAGCTGCGCCGCGCCG
AACGACGGCTTTTGGACGCAGCTGCGTCGCTGGGAGGCTGAACTGGCGCA
TATGAGGGCGTGTGAGCCGTGTGCGGCGCGCTTCAGGGCCGAGCTGCTGG
CGCTGCGGCGGCTGTACATGACTGCTGCGCTGGATGCGCCCCACGTCGAC
GGCGACGGCGACAGCGACAGCGACAGCGACTGCGACTGCGACTGCGACAG
TGACGCGTAG
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