Ggra6046.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6046.t1
Unique NameGgra6046.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length427
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:351937..353314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN326CT
PFAMsDEK_C,DSPc,LRR_8,Pkinase,Rhodanese
Max annot lvl2759|Eukaryota
KEGG koko:K01104,ko:K04459,ko:K14819
KEGG Pathwayko04010,map04010
GOsGO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004721,GO:0005575,GO:0005576,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0008138,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032879,GO:0033673,GO:0036211,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042578,GO:0043086,GO:0043170,GO:0043327,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051270,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0140096,GO:1901564,GO:1902531,GO:1902532
Evalue1.2e-12
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota
EC3.1.3.16,3.1.3.48
Descriptionprotein tyrosine/serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6046Ggra6046Gracilaria gracilis GNS1m malegenetig00000045_pilon 351937..353796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t1Ggra6046.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 351937..353314 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t1.stop1Ggra6046.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 351937..351939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t1.CDS1Ggra6046.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 351937..353154 -
Ggra6046.t1.CDS2Ggra6046.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 353252..353314 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t1.exon1Ggra6046.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 351937..353154 -
Ggra6046.t1.exon2Ggra6046.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 353252..353314 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t1.intron1Ggra6046.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 353155..353251 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6046.t1.start1Ggra6046.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 353312..353314 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6046.t1 ID=Ggra6046.t1|Name=Ggra6046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=427bp
MGVVVHGAGAGGGDSAAAWTRRPPRRSIFSRRSIFFFVVILRLLLLLLLL
LLPPPPPPVYQIVMTAASAAAATAVAPPPTSAPSSVLSVAPAVALALARA
SPPAVLLDARTPALYELERLRGALQHAPPHIPSRIVIVYDSGSDRLPQPL
RPTTRALCALLRLAEQRPTGFALALLAGGLPAAAALDADAVTRLDRAALQ
RVVRVLGAAGRRRLAAGVRAHFGAALLPPAQVLPWLYVGSARFASAPFLR
AKRVSHVLCVSHEHARAGGASAEAASLGVHWHALHMHDRADYDIRQHFAR
VVALLTHVKAAHGVLLLHCVAGVSRSVACVLAFLLWQGYRLADAWALVSA
ARSCAAPNDGFWTQLRRWEAELAHMRACEPCAARFRAELLALRRLYMTAA
LDAPHVDGDGDSDSDSDCDCDCDSDA*
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spliced messenger RNA

>Ggra6046.t1 ID=Ggra6046.t1|Name=Ggra6046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000045_pilon:351937..353314- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTCGTCGTCCACGGCGCTGGCGCTGGCGGCGGCGACAGCGCGGC
GGCGTGGACGCGTCGCCCGCCACGCCGCTCCATCTTCTCACGCCGCTCCA
TCTTCTTCTTCGTCGTCATCCTCCGTCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCCGCCGCCGCCGCCGCCTGTGTATCAAATCGTCATGACGGCTGC
CTCGGCCGCCGCCGCCACGGCCGTTGCGCCGCCGCCCACATCCGCACCGT
CCAGCGTGCTCAGCGTGGCGCCCGCCGTAGCGCTGGCGCTGGCGCGCGCC
TCGCCGCCAGCCGTGCTGCTGGACGCGCGCACGCCGGCGCTGTACGAGCT
GGAGCGGCTGCGCGGCGCGCTACAGCACGCGCCGCCTCACATCCCGTCGC
GCATCGTGATCGTGTACGACAGCGGCAGCGACCGTCTGCCGCAGCCGCTG
CGCCCCACCACGCGCGCGCTGTGCGCGCTGCTGCGGCTGGCAGAGCAGCG
TCCCACCGGCTTTGCGCTGGCGCTGCTGGCAGGCGGGCTGCCCGCCGCGG
CGGCGCTGGACGCCGACGCCGTCACGCGCCTCGACCGCGCCGCGTTGCAG
CGCGTGGTGCGCGTGCTTGGCGCCGCCGGCCGCCGCCGACTGGCTGCTGG
CGTGCGCGCGCACTTTGGCGCCGCGTTGCTGCCGCCCGCGCAGGTGCTGC
CGTGGCTGTACGTGGGGTCGGCGCGCTTTGCGTCCGCGCCCTTTCTGCGC
GCCAAGCGCGTGTCGCACGTGCTGTGCGTGAGCCACGAGCACGCGCGCGC
AGGCGGCGCGTCAGCCGAAGCCGCCTCGCTCGGCGTGCACTGGCACGCGC
TGCACATGCACGACCGCGCCGACTACGATATCCGGCAGCACTTTGCGCGC
GTGGTGGCGCTGCTCACGCACGTCAAGGCGGCGCACGGCGTGCTGCTGCT
GCACTGCGTGGCCGGCGTGAGTCGCAGCGTGGCGTGTGTGCTGGCGTTCT
TGCTGTGGCAGGGCTATCGCCTCGCCGACGCGTGGGCGCTCGTCAGCGCG
GCGCGTAGCTGCGCCGCGCCGAACGACGGCTTTTGGACGCAGCTGCGTCG
CTGGGAGGCTGAACTGGCGCATATGAGGGCGTGTGAGCCGTGTGCGGCGC
GCTTCAGGGCCGAGCTGCTGGCGCTGCGGCGGCTGTACATGACTGCTGCG
CTGGATGCGCCCCACGTCGACGGCGACGGCGACAGCGACAGCGACAGCGA
CTGCGACTGCGACTGCGACAGTGACGCGTAG
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protein sequence of Ggra6046.t1

>Ggra6046.t1 ID=Ggra6046.t1|Name=Ggra6046.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=427bp
MGVVVHGAGAGGGDSAAAWTRRPPRRSIFSRRSIFFFVVILRLLLLLLLL
LLPPPPPPVYQIVMTAASAAAATAVAPPPTSAPSSVLSVAPAVALALARA
SPPAVLLDARTPALYELERLRGALQHAPPHIPSRIVIVYDSGSDRLPQPL
RPTTRALCALLRLAEQRPTGFALALLAGGLPAAAALDADAVTRLDRAALQ
RVVRVLGAAGRRRLAAGVRAHFGAALLPPAQVLPWLYVGSARFASAPFLR
AKRVSHVLCVSHEHARAGGASAEAASLGVHWHALHMHDRADYDIRQHFAR
VVALLTHVKAAHGVLLLHCVAGVSRSVACVLAFLLWQGYRLADAWALVSA
ARSCAAPNDGFWTQLRRWEAELAHMRACEPCAARFRAELLALRRLYMTAA
LDAPHVDGDGDSDSDSDCDCDCDSDA*
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mRNA from alignment at tig00000045_pilon:351937..353314-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6046.t1 ID=Ggra6046.t1|Name=Ggra6046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1378bp|location=Sequence derived from alignment at tig00000045_pilon:351937..353314- (Gracilaria gracilis GNS1m male)
ATGGGTGTCGTCGTCCACGGCGCTGGCGCTGGCGGCGGCGACAGCGCGGC
GGCGTGGACGCGTGTGCGTGCGCCTCATATTACACCTCACGCGCAGCTTC
CATGTGTCTCTCGGCTGCAGCTGCCGCATCCATGCGCATGCGCATCATGC
GACCACGCAGCGCCCGCCACGCCGCTCCATCTTCTCACGCCGCTCCATCT
TCTTCTTCGTCGTCATCCTCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCCGCCGCCGCCGCCGCCTGTGTATCAAATCGTCATGACGGCTGCCTC
GGCCGCCGCCGCCACGGCCGTTGCGCCGCCGCCCACATCCGCACCGTCCA
GCGTGCTCAGCGTGGCGCCCGCCGTAGCGCTGGCGCTGGCGCGCGCCTCG
CCGCCAGCCGTGCTGCTGGACGCGCGCACGCCGGCGCTGTACGAGCTGGA
GCGGCTGCGCGGCGCGCTACAGCACGCGCCGCCTCACATCCCGTCGCGCA
TCGTGATCGTGTACGACAGCGGCAGCGACCGTCTGCCGCAGCCGCTGCGC
CCCACCACGCGCGCGCTGTGCGCGCTGCTGCGGCTGGCAGAGCAGCGTCC
CACCGGCTTTGCGCTGGCGCTGCTGGCAGGCGGGCTGCCCGCCGCGGCGG
CGCTGGACGCCGACGCCGTCACGCGCCTCGACCGCGCCGCGTTGCAGCGC
GTGGTGCGCGTGCTTGGCGCCGCCGGCCGCCGCCGACTGGCTGCTGGCGT
GCGCGCGCACTTTGGCGCCGCGTTGCTGCCGCCCGCGCAGGTGCTGCCGT
GGCTGTACGTGGGGTCGGCGCGCTTTGCGTCCGCGCCCTTTCTGCGCGCC
AAGCGCGTGTCGCACGTGCTGTGCGTGAGCCACGAGCACGCGCGCGCAGG
CGGCGCGTCAGCCGAAGCCGCCTCGCTCGGCGTGCACTGGCACGCGCTGC
ACATGCACGACCGCGCCGACTACGATATCCGGCAGCACTTTGCGCGCGTG
GTGGCGCTGCTCACGCACGTCAAGGCGGCGCACGGCGTGCTGCTGCTGCA
CTGCGTGGCCGGCGTGAGTCGCAGCGTGGCGTGTGTGCTGGCGTTCTTGC
TGTGGCAGGGCTATCGCCTCGCCGACGCGTGGGCGCTCGTCAGCGCGGCG
CGTAGCTGCGCCGCGCCGAACGACGGCTTTTGGACGCAGCTGCGTCGCTG
GGAGGCTGAACTGGCGCATATGAGGGCGTGTGAGCCGTGTGCGGCGCGCT
TCAGGGCCGAGCTGCTGGCGCTGCGGCGGCTGTACATGACTGCTGCGCTG
GATGCGCCCCACGTCGACGGCGACGGCGACAGCGACAGCGACAGCGACTG
CGACTGCGACTGCGACAGTGACGCGTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:351937..353314-

>Ggra6046.t1 ID=Ggra6046.t1|Name=Ggra6046.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1281bp|location=Sequence derived from alignment at tig00000045_pilon:351937..353314- (Gracilaria gracilis GNS1m male)
ATGGGTGTCGTCGTCCACGGCGCTGGCGCTGGCGGCGGCGACAGCGCGGC
GGCGTGGACGCGTCGCCCGCCACGCCGCTCCATCTTCTCACGCCGCTCCA
TCTTCTTCTTCGTCGTCATCCTCCGTCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCCGCCGCCGCCGCCGCCTGTGTATCAAATCGTCATGACGGCTGC
CTCGGCCGCCGCCGCCACGGCCGTTGCGCCGCCGCCCACATCCGCACCGT
CCAGCGTGCTCAGCGTGGCGCCCGCCGTAGCGCTGGCGCTGGCGCGCGCC
TCGCCGCCAGCCGTGCTGCTGGACGCGCGCACGCCGGCGCTGTACGAGCT
GGAGCGGCTGCGCGGCGCGCTACAGCACGCGCCGCCTCACATCCCGTCGC
GCATCGTGATCGTGTACGACAGCGGCAGCGACCGTCTGCCGCAGCCGCTG
CGCCCCACCACGCGCGCGCTGTGCGCGCTGCTGCGGCTGGCAGAGCAGCG
TCCCACCGGCTTTGCGCTGGCGCTGCTGGCAGGCGGGCTGCCCGCCGCGG
CGGCGCTGGACGCCGACGCCGTCACGCGCCTCGACCGCGCCGCGTTGCAG
CGCGTGGTGCGCGTGCTTGGCGCCGCCGGCCGCCGCCGACTGGCTGCTGG
CGTGCGCGCGCACTTTGGCGCCGCGTTGCTGCCGCCCGCGCAGGTGCTGC
CGTGGCTGTACGTGGGGTCGGCGCGCTTTGCGTCCGCGCCCTTTCTGCGC
GCCAAGCGCGTGTCGCACGTGCTGTGCGTGAGCCACGAGCACGCGCGCGC
AGGCGGCGCGTCAGCCGAAGCCGCCTCGCTCGGCGTGCACTGGCACGCGC
TGCACATGCACGACCGCGCCGACTACGATATCCGGCAGCACTTTGCGCGC
GTGGTGGCGCTGCTCACGCACGTCAAGGCGGCGCACGGCGTGCTGCTGCT
GCACTGCGTGGCCGGCGTGAGTCGCAGCGTGGCGTGTGTGCTGGCGTTCT
TGCTGTGGCAGGGCTATCGCCTCGCCGACGCGTGGGCGCTCGTCAGCGCG
GCGCGTAGCTGCGCCGCGCCGAACGACGGCTTTTGGACGCAGCTGCGTCG
CTGGGAGGCTGAACTGGCGCATATGAGGGCGTGTGAGCCGTGTGCGGCGC
GCTTCAGGGCCGAGCTGCTGGCGCTGCGGCGGCTGTACATGACTGCTGCG
CTGGATGCGCCCCACGTCGACGGCGACGGCGACAGCGACAGCGACAGCGA
CTGCGACTGCGACTGCGACAGTGACGCGTAG
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