Ggra6045.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6045.t1
Unique NameGgra6045.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length561
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:353372..355146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6045Ggra6045Gracilaria gracilis GNS1m malegenetig00000045_pilon 353372..361215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6045.t1Ggra6045.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 353372..355146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6045.t1.start1Ggra6045.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 353372..353374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6045.t1.CDS1Ggra6045.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 353372..354970 +
Ggra6045.t1.CDS2Ggra6045.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 355063..355146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6045.t1.exon1Ggra6045.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 353372..354970 +
Ggra6045.t1.exon2Ggra6045.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 355063..355146 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6045.t1.intron1Ggra6045.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 354971..355062 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6045.t1.stop1Ggra6045.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 355144..355146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6045.t1 ID=Ggra6045.t1|Name=Ggra6045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp
MAPTTTTLRAALRAVDAHATGGSTAAGGSARLPTLPRATPLALRLHVARA
QLVQQHNAALQLAQRRPRPQQQRPRPHDGGAAGAILTRALRAATAAMPLC
AAPPRASVQQLAALAAAHAPATLPAAPLRELRAVAAAGAACIELQLALLL
APQQQPPPLQQQQQAQRVSDALALAYELRRLQTAGDARGDERARGGGGAL
VRVRYLHALHAAAQRDVRRARSALLLADGGEREEQMQHAPSKYLLALLPL
LSGGGGGGGGGGQHDESQQPQLRESERLLRQLGAQSYRNSDCLALLARVA
ARRADYRHAVLQWHAVLARQPSRRAALYSAAAAFNRLCAFDEEQRTLAVL
LALPVQPPPASRPPAAVQLAPRQLCMRRAAEQRVRATVGAGRLALAASLC
DAHAGPLPPAERMFVRVSLGDVRGALALEARGVQDARARARLLAAWSAAE
AHVRRNDAPLANARLRDAARLVVAARRGAAPLCDDVAWRAALFANRAVVH
ARLGALAVADHELAAALAAAAKLAAPPDAAPAPLLARVLRHAARRAAGPG
RRRRRRRRTR*
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spliced messenger RNA

>Ggra6045.t1 ID=Ggra6045.t1|Name=Ggra6045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1683bp|location=Sequence derived from alignment at tig00000045_pilon:353372..355146+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGACGACGACGACGCTACGCGCCGCGCTGCGCGCAGTGGACGC
GCACGCGACGGGCGGCAGCACCGCCGCCGGCGGCAGCGCGCGGCTGCCGA
CGTTACCGCGCGCCACGCCGCTGGCGCTGCGGCTGCACGTGGCGCGCGCG
CAGCTGGTGCAGCAACACAACGCCGCGCTGCAGCTTGCGCAGCGGCGGCC
GCGCCCGCAGCAGCAGCGGCCGCGGCCGCACGACGGCGGCGCAGCCGGTG
CGATACTGACGCGCGCGCTACGCGCCGCCACGGCGGCCATGCCGCTATGC
GCCGCGCCGCCGCGCGCCAGCGTGCAGCAGCTGGCGGCGCTGGCGGCCGC
GCACGCGCCCGCCACGCTACCGGCCGCGCCACTGCGCGAGCTGCGCGCGG
TGGCGGCGGCCGGCGCCGCGTGCATCGAgctgcagctcgcacttctcttg
gcgccgcagcagcagccgccaccgctgcagcagcagcagcaggcgcagcg
cGTGAgcgacgcgctggcgttggcgtacgagctgcggcggctgcagacgg
cgggcgatgcgcgcggcgacgagcgagcgcgcggcggcggcggcgCGTTG
GTGCGCGTGCGCTACCTTCACGCGCTGCACGCAGCCGCGCAGCGCGACGT
GCGGCGCGCGCGATCCGCGCTGCTGCTTGCGGACGGCGGCGAGCGCGAAG
AGCAGATGCAGCACGCGCCCAGCAAGTATCTGCTGGCGCTGCTTCCGTTG
CTGAgcggcggcggcggcggcggcggcggcggcggcCAGCACGACGAGTC
GCAGCAGCCGCAGCTGCGGGAGAGCGAGCGACTGCTGCGGCAGCTGGGCG
CGCAGTCATACCGCAACAGCGACTGTCTGGCGCTGCTTGCGCGAGTGGCG
GCGCGCCGCGCCGATTATCGCCACGCCGTGCTGCAGTGGCACGCCGTGCT
GGCGCGTCAGCCAAGCCGCCGCGCCGCGCTGTACTCGGCCGCCGCCGCCT
TCAACCGCCTGTGCGCCTTTGACGAGGAGCAGCGCACTCTCGCCGTGCTG
CTCGCGCTCCCCGTCCAGCCGCCGCCCGCGTCACGACCGCCGGCCGCCGT
GCAGCTGGCGCCGCGCCAGCTGTGCATGCGCCGCGCGGCCGAACAGCGCG
TACGCGCGACGGTTGGCGCGGGACGCCTCGCGCTCGCCGCGTCGCTGTGC
GACGCGCACGCGGGGCCGCTGCCGCCCGCGGAGCGCATGTTCGTGCGCGT
TTCGCTGGGCGACGTGCGCGGCGCGCTGGCGTTGGAGGCGCGCGGCGTGC
AGGACGCGCGCGCACGCGCGCGGCTGCTGGCGGCGTGGAGCGCGGCCGAG
GCGCACGTGCGTCGCAACGACGCGCCGCTCGCCAACGCGCGTCTGCGCGA
CGCGGCGCGGCTGGTGGTGGCGGCGCGGCGAGGCGCAGCGCCGCTGTGCG
ACGACGTTGCGTGGCGCGCCGCGCTGTTTGCAAACCGCGCCGTGGTGCAC
GCGCGCCTTGGCGCGCTCGCCGTCGCAGACCACGAGCTGGCCGCCGCGCT
TGCGGCGGCTGCGAAGCTCGCCGCGCCGCCGGACGCCGCGCCGGCCCCCC
TTCTGGCGCGCGTTTTGCGCCACGCTGCCCGTCGAGCGGCTGGGCCTGgg
cgacggcgacggcgacggcgacggACGAGATGA
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protein sequence of Ggra6045.t1

>Ggra6045.t1 ID=Ggra6045.t1|Name=Ggra6045.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=561bp
MAPTTTTLRAALRAVDAHATGGSTAAGGSARLPTLPRATPLALRLHVARA
QLVQQHNAALQLAQRRPRPQQQRPRPHDGGAAGAILTRALRAATAAMPLC
AAPPRASVQQLAALAAAHAPATLPAAPLRELRAVAAAGAACIELQLALLL
APQQQPPPLQQQQQAQRVSDALALAYELRRLQTAGDARGDERARGGGGAL
VRVRYLHALHAAAQRDVRRARSALLLADGGEREEQMQHAPSKYLLALLPL
LSGGGGGGGGGGQHDESQQPQLRESERLLRQLGAQSYRNSDCLALLARVA
ARRADYRHAVLQWHAVLARQPSRRAALYSAAAAFNRLCAFDEEQRTLAVL
LALPVQPPPASRPPAAVQLAPRQLCMRRAAEQRVRATVGAGRLALAASLC
DAHAGPLPPAERMFVRVSLGDVRGALALEARGVQDARARARLLAAWSAAE
AHVRRNDAPLANARLRDAARLVVAARRGAAPLCDDVAWRAALFANRAVVH
ARLGALAVADHELAAALAAAAKLAAPPDAAPAPLLARVLRHAARRAAGPG
RRRRRRRRTR*
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mRNA from alignment at tig00000045_pilon:353372..355146+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6045.t1 ID=Ggra6045.t1|Name=Ggra6045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1775bp|location=Sequence derived from alignment at tig00000045_pilon:353372..355146+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGACGACGACGACGCTACGCGCCGCGCTGCGCGCAGTGGACGC
GCACGCGACGGGCGGCAGCACCGCCGCCGGCGGCAGCGCGCGGCTGCCGA
CGTTACCGCGCGCCACGCCGCTGGCGCTGCGGCTGCACGTGGCGCGCGCG
CAGCTGGTGCAGCAACACAACGCCGCGCTGCAGCTTGCGCAGCGGCGGCC
GCGCCCGCAGCAGCAGCGGCCGCGGCCGCACGACGGCGGCGCAGCCGGTG
CGATACTGACGCGCGCGCTACGCGCCGCCACGGCGGCCATGCCGCTATGC
GCCGCGCCGCCGCGCGCCAGCGTGCAGCAGCTGGCGGCGCTGGCGGCCGC
GCACGCGCCCGCCACGCTACCGGCCGCGCCACTGCGCGAGCTGCGCGCGG
TGGCGGCGGCCGGCGCCGCGTGCATCGAgctgcagctcgcacttctcttg
gcgccgcagcagcagccgccaccgctgcagcagcagcagcaggcgcagcg
cGTGAgcgacgcgctggcgttggcgtacgagctgcggcggctgcagacgg
cgggcgatgcgcgcggcgacgagcgagcgcgcggcggcggcggcgCGTTG
GTGCGCGTGCGCTACCTTCACGCGCTGCACGCAGCCGCGCAGCGCGACGT
GCGGCGCGCGCGATCCGCGCTGCTGCTTGCGGACGGCGGCGAGCGCGAAG
AGCAGATGCAGCACGCGCCCAGCAAGTATCTGCTGGCGCTGCTTCCGTTG
CTGAgcggcggcggcggcggcggcggcggcggcggcCAGCACGACGAGTC
GCAGCAGCCGCAGCTGCGGGAGAGCGAGCGACTGCTGCGGCAGCTGGGCG
CGCAGTCATACCGCAACAGCGACTGTCTGGCGCTGCTTGCGCGAGTGGCG
GCGCGCCGCGCCGATTATCGCCACGCCGTGCTGCAGTGGCACGCCGTGCT
GGCGCGTCAGCCAAGCCGCCGCGCCGCGCTGTACTCGGCCGCCGCCGCCT
TCAACCGCCTGTGCGCCTTTGACGAGGAGCAGCGCACTCTCGCCGTGCTG
CTCGCGCTCCCCGTCCAGCCGCCGCCCGCGTCACGACCGCCGGCCGCCGT
GCAGCTGGCGCCGCGCCAGCTGTGCATGCGCCGCGCGGCCGAACAGCGCG
TACGCGCGACGGTTGGCGCGGGACGCCTCGCGCTCGCCGCGTCGCTGTGC
GACGCGCACGCGGGGCCGCTGCCGCCCGCGGAGCGCATGTTCGTGCGCGT
TTCGCTGGGCGACGTGCGCGGCGCGCTGGCGTTGGAGGCGCGCGGCGTGC
AGGACGCGCGCGCACGCGCGCGGCTGCTGGCGGCGTGGAGCGCGGCCGAG
GCGCACGTGCGTCGCAACGACGCGCCGCTCGCCAACGCGCGTCTGCGCGA
CGCGGCGCGGCTGGTGGTGGCGGCGCGGCGAGGCGCAGCGCCGCTGTGCG
ACGACGTTGCGTGGCGCGCCGCGCTGTTTGCAAACCGCGCCGTGGTGCAC
GCGCGCCTTGGCGCGCTCGCCGTCGCAGACCACGAGCTGGCCGCCGCGCT
TGCGGCGGCTGCGAAGCTCGCCGCGCCGCCGGACGCCGCGCCGGCCCCCG
TGCGCGAGTGGGCGCGCCAGCGACGGCTGGCGGCGGCGTTTTCGCGCGCC
GCGCTGCTGCTGTGGCGCGGCGACGGCCGCGATGCCCACAGCTTCTGGCG
CGCGTTTTGCGCCACGCTGCCCGTCGAGCGGCTGGGCCTGggcgacggcg
acggcgacggcgacggACGAGATGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:353372..355146+

>Ggra6045.t1 ID=Ggra6045.t1|Name=Ggra6045.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1683bp|location=Sequence derived from alignment at tig00000045_pilon:353372..355146+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGACGACGACGACGCTACGCGCCGCGCTGCGCGCAGTGGACGC
GCACGCGACGGGCGGCAGCACCGCCGCCGGCGGCAGCGCGCGGCTGCCGA
CGTTACCGCGCGCCACGCCGCTGGCGCTGCGGCTGCACGTGGCGCGCGCG
CAGCTGGTGCAGCAACACAACGCCGCGCTGCAGCTTGCGCAGCGGCGGCC
GCGCCCGCAGCAGCAGCGGCCGCGGCCGCACGACGGCGGCGCAGCCGGTG
CGATACTGACGCGCGCGCTACGCGCCGCCACGGCGGCCATGCCGCTATGC
GCCGCGCCGCCGCGCGCCAGCGTGCAGCAGCTGGCGGCGCTGGCGGCCGC
GCACGCGCCCGCCACGCTACCGGCCGCGCCACTGCGCGAGCTGCGCGCGG
TGGCGGCGGCCGGCGCCGCGTGCATCGAgctgcagctcgcacttctcttg
gcgccgcagcagcagccgccaccgctgcagcagcagcagcaggcgcagcg
cGTGAgcgacgcgctggcgttggcgtacgagctgcggcggctgcagacgg
cgggcgatgcgcgcggcgacgagcgagcgcgcggcggcggcggcgCGTTG
GTGCGCGTGCGCTACCTTCACGCGCTGCACGCAGCCGCGCAGCGCGACGT
GCGGCGCGCGCGATCCGCGCTGCTGCTTGCGGACGGCGGCGAGCGCGAAG
AGCAGATGCAGCACGCGCCCAGCAAGTATCTGCTGGCGCTGCTTCCGTTG
CTGAgcggcggcggcggcggcggcggcggcggcggcCAGCACGACGAGTC
GCAGCAGCCGCAGCTGCGGGAGAGCGAGCGACTGCTGCGGCAGCTGGGCG
CGCAGTCATACCGCAACAGCGACTGTCTGGCGCTGCTTGCGCGAGTGGCG
GCGCGCCGCGCCGATTATCGCCACGCCGTGCTGCAGTGGCACGCCGTGCT
GGCGCGTCAGCCAAGCCGCCGCGCCGCGCTGTACTCGGCCGCCGCCGCCT
TCAACCGCCTGTGCGCCTTTGACGAGGAGCAGCGCACTCTCGCCGTGCTG
CTCGCGCTCCCCGTCCAGCCGCCGCCCGCGTCACGACCGCCGGCCGCCGT
GCAGCTGGCGCCGCGCCAGCTGTGCATGCGCCGCGCGGCCGAACAGCGCG
TACGCGCGACGGTTGGCGCGGGACGCCTCGCGCTCGCCGCGTCGCTGTGC
GACGCGCACGCGGGGCCGCTGCCGCCCGCGGAGCGCATGTTCGTGCGCGT
TTCGCTGGGCGACGTGCGCGGCGCGCTGGCGTTGGAGGCGCGCGGCGTGC
AGGACGCGCGCGCACGCGCGCGGCTGCTGGCGGCGTGGAGCGCGGCCGAG
GCGCACGTGCGTCGCAACGACGCGCCGCTCGCCAACGCGCGTCTGCGCGA
CGCGGCGCGGCTGGTGGTGGCGGCGCGGCGAGGCGCAGCGCCGCTGTGCG
ACGACGTTGCGTGGCGCGCCGCGCTGTTTGCAAACCGCGCCGTGGTGCAC
GCGCGCCTTGGCGCGCTCGCCGTCGCAGACCACGAGCTGGCCGCCGCGCT
TGCGGCGGCTGCGAAGCTCGCCGCGCCGCCGGACGCCGCGCCGGCCCCCC
TTCTGGCGCGCGTTTTGCGCCACGCTGCCCGTCGAGCGGCTGGGCCTGgg
cgacggcgacggcgacggcgacggACGAGATGA
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