Ggra6042.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6042.t1
Unique NameGgra6042.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:341144..342277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705365.1
Preferred nameMETAP1
PFAMsPeptidase_M24,zf-C6H2
Max annot lvl2759|Eukaryota
KEGG koko:K01265
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008277,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016787,GO:0018193,GO:0018206,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031323,GO:0031326,GO:0031365,GO:0032101,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112
Evalue9.95e-159
EggNOG OGsCOG0024@1|root,KOG2738@2759|Eukaryota
EC3.4.11.18
Descriptionmetalloexopeptidase activity
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6042Ggra6042Gracilaria gracilis GNS1m malegenetig00000045_pilon 341144..342277 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6042.t1.stop1Ggra6042.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 341144..341146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6042.t1.CDS1Ggra6042.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 341144..342277 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6042.t1.exon1Ggra6042.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 341144..342277 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6042.t1.start1Ggra6042.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 342275..342277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6042.t1Ggra6042.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 341144..342277 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6042.t1 ID=Ggra6042.t1|Name=Ggra6042.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MLCASQSCQEDAKLRCPTCVKLEIDLVSESFFCSQECFRASWPVHKQLHK
GSALPRAMDPSAKRRRAAFATYHYTGQLRAAELVMPLRTVPDSIVKPDYA
LDGIPRSEEKFNRTSTNFCILDHTAIAAMRKVCRLAREVLDIAVNAAKVG
VTTEQIDQIVHAACIDRHSYPSPLNYYGFPKACCTSVNEVICHGIPDQRP
LQDGDILNIDITLYHGGYHGDLNETICIGNVSQQDKRLIRSAHDSMWAAI
KRVKPGVLFREFGAHIEKLVKANGHSVVRSYCGHGIGQQFHTAPNVPHYK
KNRAVGMCKAGMCFTIEPMINAGGWRDDTWPDNWTAVTADGSRSAQFEHT
VLVTDNGFEVLTARLPDGPKFWWENDS*
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spliced messenger RNA

>Ggra6042.t1 ID=Ggra6042.t1|Name=Ggra6042.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000045_pilon:341144..342277- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCGCGTCTCAAAGCTGCCAAGAGGACGCCAAGCTACGCTGTCC
CACCTGCGTCAAGCTCGAAATCGACCTCGTCTCCGAGAGCTTCTTCTGCT
CCCAAGAGTGCTTCCGCGCCTCATGGCCCGTGCACAAGCAGCTGCACAAG
GGCTCCGCCCTCCCTCGTGCCATGGACCCTTCCGCCAAGCGCCGCCGCGC
TGCCTTCGCCACCTACCACTACACGGGCCAGCTGCGAGCCGCCGAGCTTG
TCATGCCGTTGCGAACCGTGCCCGACTCCATCGTCAAGCCCGACTACGCG
CTCGACGGCATCCCGCGCAGCGAAGAGAAGTTTAATCGAACCAGTACCAA
CTTTTGTATTTTGGATCACACCGCCATTGCCGCCATGCGAAAAGTGTGTC
GCTTGGCGAGAGAGGTGCTTGATATTGCCGTCAACGCCGCCAAAGTGGGC
GTCACCACCGAGCAAATCGATCAAATCGTCCACGCCGCCTGCATTGACAG
GCATTCATACCCTAGCCCTTTAAACTACTACGGCTTTCCAAAGGCGTGCT
GCACTAGCGTCAACGAGGTCATCTGTCACGGAATTCCAGACCAACGGCCC
CTTCAAGACGGCGACATTCTAAACATTGACATTACCCTGTATCATGGCGG
CTATCACGGCGACCTCAACGAAACAATATGCATTGGCAACGTCTCCCAGC
AAGACAAGCGCCTCATTCGCTCTGCGCACGACTCCATGTGGGCCGCCATC
AAACGAGTCAAGCCCGGCGTCCTATTCCGTGAGTTTGGCGCTCACATTGA
GAAACTTGTCAAAGCAAACGGGCACTCCGTCGTGCGCAGTTACTGCGGCC
ATGGAATCGGACAACAGTTTCACACCGCCCCAAACGTGCCGCACTACAAG
AAGAATAGGGCTGTTGGCATGTGCAAAGCCGGTATGTGTTTCACTATCGA
ACCTATGATCAACGCTGGCGGCTGGCGAGACGACACTTGGCCGGACAATT
GGACTGCCGTCACAGCCGATGGCAGTCGCTCCGCACAGTTTGAACACACC
GTGCTAGTAACGGACAACGGTTTCGAAGTTCTCACTGCGCGTTTGCCGGA
CGGGCCAAAATTCTGGTGGGAGAACGACAGCTAG
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protein sequence of Ggra6042.t1

>Ggra6042.t1 ID=Ggra6042.t1|Name=Ggra6042.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MLCASQSCQEDAKLRCPTCVKLEIDLVSESFFCSQECFRASWPVHKQLHK
GSALPRAMDPSAKRRRAAFATYHYTGQLRAAELVMPLRTVPDSIVKPDYA
LDGIPRSEEKFNRTSTNFCILDHTAIAAMRKVCRLAREVLDIAVNAAKVG
VTTEQIDQIVHAACIDRHSYPSPLNYYGFPKACCTSVNEVICHGIPDQRP
LQDGDILNIDITLYHGGYHGDLNETICIGNVSQQDKRLIRSAHDSMWAAI
KRVKPGVLFREFGAHIEKLVKANGHSVVRSYCGHGIGQQFHTAPNVPHYK
KNRAVGMCKAGMCFTIEPMINAGGWRDDTWPDNWTAVTADGSRSAQFEHT
VLVTDNGFEVLTARLPDGPKFWWENDS*
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mRNA from alignment at tig00000045_pilon:341144..342277-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6042.t1 ID=Ggra6042.t1|Name=Ggra6042.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000045_pilon:341144..342277- (Gracilaria gracilis GNS1m male)
ATGCTGTGCGCGTCTCAAAGCTGCCAAGAGGACGCCAAGCTACGCTGTCC
CACCTGCGTCAAGCTCGAAATCGACCTCGTCTCCGAGAGCTTCTTCTGCT
CCCAAGAGTGCTTCCGCGCCTCATGGCCCGTGCACAAGCAGCTGCACAAG
GGCTCCGCCCTCCCTCGTGCCATGGACCCTTCCGCCAAGCGCCGCCGCGC
TGCCTTCGCCACCTACCACTACACGGGCCAGCTGCGAGCCGCCGAGCTTG
TCATGCCGTTGCGAACCGTGCCCGACTCCATCGTCAAGCCCGACTACGCG
CTCGACGGCATCCCGCGCAGCGAAGAGAAGTTTAATCGAACCAGTACCAA
CTTTTGTATTTTGGATCACACCGCCATTGCCGCCATGCGAAAAGTGTGTC
GCTTGGCGAGAGAGGTGCTTGATATTGCCGTCAACGCCGCCAAAGTGGGC
GTCACCACCGAGCAAATCGATCAAATCGTCCACGCCGCCTGCATTGACAG
GCATTCATACCCTAGCCCTTTAAACTACTACGGCTTTCCAAAGGCGTGCT
GCACTAGCGTCAACGAGGTCATCTGTCACGGAATTCCAGACCAACGGCCC
CTTCAAGACGGCGACATTCTAAACATTGACATTACCCTGTATCATGGCGG
CTATCACGGCGACCTCAACGAAACAATATGCATTGGCAACGTCTCCCAGC
AAGACAAGCGCCTCATTCGCTCTGCGCACGACTCCATGTGGGCCGCCATC
AAACGAGTCAAGCCCGGCGTCCTATTCCGTGAGTTTGGCGCTCACATTGA
GAAACTTGTCAAAGCAAACGGGCACTCCGTCGTGCGCAGTTACTGCGGCC
ATGGAATCGGACAACAGTTTCACACCGCCCCAAACGTGCCGCACTACAAG
AAGAATAGGGCTGTTGGCATGTGCAAAGCCGGTATGTGTTTCACTATCGA
ACCTATGATCAACGCTGGCGGCTGGCGAGACGACACTTGGCCGGACAATT
GGACTGCCGTCACAGCCGATGGCAGTCGCTCCGCACAGTTTGAACACACC
GTGCTAGTAACGGACAACGGTTTCGAAGTTCTCACTGCGCGTTTGCCGGA
CGGGCCAAAATTCTGGTGGGAGAACGACAGCTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:341144..342277-

>Ggra6042.t1 ID=Ggra6042.t1|Name=Ggra6042.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000045_pilon:341144..342277- (Gracilaria gracilis GNS1m male)
ATGCTGTGCGCGTCTCAAAGCTGCCAAGAGGACGCCAAGCTACGCTGTCC
CACCTGCGTCAAGCTCGAAATCGACCTCGTCTCCGAGAGCTTCTTCTGCT
CCCAAGAGTGCTTCCGCGCCTCATGGCCCGTGCACAAGCAGCTGCACAAG
GGCTCCGCCCTCCCTCGTGCCATGGACCCTTCCGCCAAGCGCCGCCGCGC
TGCCTTCGCCACCTACCACTACACGGGCCAGCTGCGAGCCGCCGAGCTTG
TCATGCCGTTGCGAACCGTGCCCGACTCCATCGTCAAGCCCGACTACGCG
CTCGACGGCATCCCGCGCAGCGAAGAGAAGTTTAATCGAACCAGTACCAA
CTTTTGTATTTTGGATCACACCGCCATTGCCGCCATGCGAAAAGTGTGTC
GCTTGGCGAGAGAGGTGCTTGATATTGCCGTCAACGCCGCCAAAGTGGGC
GTCACCACCGAGCAAATCGATCAAATCGTCCACGCCGCCTGCATTGACAG
GCATTCATACCCTAGCCCTTTAAACTACTACGGCTTTCCAAAGGCGTGCT
GCACTAGCGTCAACGAGGTCATCTGTCACGGAATTCCAGACCAACGGCCC
CTTCAAGACGGCGACATTCTAAACATTGACATTACCCTGTATCATGGCGG
CTATCACGGCGACCTCAACGAAACAATATGCATTGGCAACGTCTCCCAGC
AAGACAAGCGCCTCATTCGCTCTGCGCACGACTCCATGTGGGCCGCCATC
AAACGAGTCAAGCCCGGCGTCCTATTCCGTGAGTTTGGCGCTCACATTGA
GAAACTTGTCAAAGCAAACGGGCACTCCGTCGTGCGCAGTTACTGCGGCC
ATGGAATCGGACAACAGTTTCACACCGCCCCAAACGTGCCGCACTACAAG
AAGAATAGGGCTGTTGGCATGTGCAAAGCCGGTATGTGTTTCACTATCGA
ACCTATGATCAACGCTGGCGGCTGGCGAGACGACACTTGGCCGGACAATT
GGACTGCCGTCACAGCCGATGGCAGTCGCTCCGCACAGTTTGAACACACC
GTGCTAGTAACGGACAACGGTTTCGAAGTTCTCACTGCGCGTTTGCCGGA
CGGGCCAAAATTCTGGTGGGAGAACGACAGCTAG
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