Ggra6041.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6041.t1
Unique Name	Ggra6041.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	597

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:338268..340058 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5888.CAK64108
PFAMs	EF-hand_1,EF-hand_5,EF-hand_7,Pkinase
Max annot lvl	5878\|Ciliophora
KEGG ko	ko:K13412
KEGG Pathway	ko04626,ko05145,map04626,map05145
Evalue	1.29e-41
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota,3ZB73@5878\|Ciliophora
EC	2.7.11.1
Description	EF-hand domain pair
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6041	Ggra6041	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 338268..340058 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6041.t1.start1	Ggra6041.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 338268..338270 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6041.t1.CDS1	Ggra6041.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 338268..340058 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6041.t1.exon1	Ggra6041.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 338268..340058 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6041.t1.stop1	Ggra6041.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 340056..340058 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6041.t1	Ggra6041.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 338268..340058 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:338268..340058+
coding sequence from alignment at tig00000045_pilon:338268..340058+

mRNA sequence

>Ggra6041.t1 ID=Ggra6041.t1|Name=Ggra6041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp
MHSSPLTPPPSTDPAAAATTTTLRAARRLSASQLQPQPLPSPLPAQQPSQ
STAAPPRPCSPPSPPPPRGLQFTMSSTRRKNDRHLGAPARASRPTNPSVA
SLSERIGRREHASRAQIAKRLRGAHPIASSSVSSLTELAASQHPSVSAAA
AAAHASALRRHRRRASESGVPATYLSHHKRAHSPPQQQQQQQLNASAPVP
LNTRRCPLELHHFTLNKMLGSGGTATVFRAEVVPESLAASYIAPNELALK
AVSKKGLTRRAQHYLAREIAIHRNLEHPNIAALYEVFEDSAGIYLAMELL
KGNDLYTALKRERRGFPEPLALQICAQVLDALRYMHSLGYAHRDVKPENI
MFTEKPFYADGKLAPVKLVDFGLASARDPNASEKEKLSSEKCGTVRYAAP
EIVTETAYVPELCDIWSVGIVLYSIIAHRNPYTGRTEREVLQQIANTPLS
FNSPEWERVSNDTKQFIGACLSLKPSDRPNAARALEEVNRISNMLADRQV
GDSFTSKDHPTHMRSSGKRRQQEMFREDVSGFSSHVTPDSSASNSRRRDG
SSGDANDSSPSNSGDGSAHPTNFLDGLLAWFSGGSTPERNGSDNPQ*

spliced messenger RNA

>Ggra6041.t1 ID=Ggra6041.t1|Name=Ggra6041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000045_pilon:338268..340058+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCCTCCCCGCTAACTCCGCCCCCCTCTACCGACCCCGCCGCCGC
CGCCACCACCACCACCTTGCGCGCCGCGCGCCGTCTCTCCGCCTCCCAAC
TGCAGCCGCAACCGTTACCATCGCCGCTCCCCGCGCAACAGCCGTCGCAA
TCCACCGCCGCGCCGCCGCGCCCGTGCAGCCCGCCGTCGCCGCCGCCGCC
GCGCGGCCTTCAATTCACCATGTCCTCCACGCGCCGAAAAAACGACCGCC
ATTTGGGCGCGCCGGCGCGCGCGTCGCGTCCGACCAACCCGTCCGTCGCG
TCGCTGTCGGAGCGCATCGGCCGCCGCGAGCACGCCAGCCGCGCGCAGAT
CGCAAAGCGACTGCGCGGCGCCCACCCCATCGCCTCCTCCTCCGTGTCGT
CGCTCACGGAGCTGGCCGCCTCGCAGCACCCTTCTGTCAGCGCCGCCGCC
GCCGCCGCGCATGCGTCCGCGCTGCGCCGACACCGCCGCCGCGCCTCCGA
GTCGGGCGTGCCCGCCACGTACTTGTCGCACCACAAGCGCGCGCACTCCC
CgccgcagcagcagcaacagcagcagcTCAACGCGTCCGCGCCCGTGCCG
CTCAATACGCGCCGCTGCCCGCTGGAGCTGCACCACTTCACGCTCAACAA
GATGCTGGGGTCCGGCGGCACCGCCACCGTGTTTCGCGCAGAGGTTGTGC
CCGAGTCGCTGGCCGCTTCGTACATTGCGCCCAACGAGCTGGCGCTCAAG
GCCGTGTCGAAGAAGGGCCTTACGCGACGCGCGCAGCACTACTTGGCGAG
GGAGATTGCCATTCATCGCAATTTGGAACACCCCAACATTGCTGCCTTGT
ACGAGGTGTTTGAAGACTCTGCTGGCATTTATCTTGCCATGGAGCTGTTG
AAGGGCAATGATTTGTACACCGCTCTCAAGAGGGAGCGCCGCGGCTTTCC
AGAGCCTCTTGCCTTGCAAATATGCGCCCAGGTGCTGGACGCCTTGCGCT
ACATGCATTCGCTTGGCTACGCGCATCGCGACGTCAAGCCGGAGAACATC
ATGTTCACGGAAAAGCCCTTCTACGCGGATGGCAAACTGGCGCCAGTCAA
GCTTGTCGACTTTGGCTTGGCGAGTGCACGCGACCCGAACGCGTCGGAAA
AGGAGAAGCTCAGCTCTGAAAAGTGCGGCACTGTGCGCTATGCCGCGCCG
GAAATCGTTACCGAGACTGCCTATGTTCCAGAGCTTTGCGACATTTGGAG
TGTGGGCATTGTGCTCTACTCAATTATCGCGCATCGAAACCCGTACACCG
GACGTACGGAGAGAGAGGTGTTGCAACAGATTGCAAACACCCCGCTTTCG
TTCAACTCTCCCGAGTGGGAGCGAGTGAGCAATGACACCAAGCAGTTCAT
TGGAGCTTGTCTTTCTCTCAAGCCTTCCGACCGACCGAATGCAGCGCGCG
CGTTGGAAGAGGTGAATCGAATCAGCAACATGCTCGCTGACAGGCAGGTG
GGTGATTCATTTACAAGCAAGGATCACCCCACTCACATGCGTTCATCTGG
CAAGAGACGCCAGCAAGAAATGTTTCGGGAAGATGTCTCTGGCTTCTCCA
GCCATGTCACTCCGGACAGCAGCGCAAGTAATAGTCGTCGCCGTGATGGT
TCCAGTGGTGACGCCAATGACTCGTCGCCGAGCAACAGCGGCGACGGCAG
TGCGCATCCAACAAACTTTTTGGATGGTCTATTAGCCTGGTTCAGTGGTG
GATCCACACCGGAGAGAAACGGTTCTGACAACCCGCAATAG

protein sequence of Ggra6041.t1

>Ggra6041.t1 ID=Ggra6041.t1|Name=Ggra6041.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=597bp
MHSSPLTPPPSTDPAAAATTTTLRAARRLSASQLQPQPLPSPLPAQQPSQ
STAAPPRPCSPPSPPPPRGLQFTMSSTRRKNDRHLGAPARASRPTNPSVA
SLSERIGRREHASRAQIAKRLRGAHPIASSSVSSLTELAASQHPSVSAAA
AAAHASALRRHRRRASESGVPATYLSHHKRAHSPPQQQQQQQLNASAPVP
LNTRRCPLELHHFTLNKMLGSGGTATVFRAEVVPESLAASYIAPNELALK
AVSKKGLTRRAQHYLAREIAIHRNLEHPNIAALYEVFEDSAGIYLAMELL
KGNDLYTALKRERRGFPEPLALQICAQVLDALRYMHSLGYAHRDVKPENI
MFTEKPFYADGKLAPVKLVDFGLASARDPNASEKEKLSSEKCGTVRYAAP
EIVTETAYVPELCDIWSVGIVLYSIIAHRNPYTGRTEREVLQQIANTPLS
FNSPEWERVSNDTKQFIGACLSLKPSDRPNAARALEEVNRISNMLADRQV
GDSFTSKDHPTHMRSSGKRRQQEMFREDVSGFSSHVTPDSSASNSRRRDG
SSGDANDSSPSNSGDGSAHPTNFLDGLLAWFSGGSTPERNGSDNPQ*

mRNA from alignment at tig00000045_pilon:338268..340058+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6041.t1 ID=Ggra6041.t1|Name=Ggra6041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000045_pilon:338268..340058+ (Gracilaria gracilis GNS1m male)
ATGCACTCCTCCCCGCTAACTCCGCCCCCCTCTACCGACCCCGCCGCCGC
CGCCACCACCACCACCTTGCGCGCCGCGCGCCGTCTCTCCGCCTCCCAAC
TGCAGCCGCAACCGTTACCATCGCCGCTCCCCGCGCAACAGCCGTCGCAA
TCCACCGCCGCGCCGCCGCGCCCGTGCAGCCCGCCGTCGCCGCCGCCGCC
GCGCGGCCTTCAATTCACCATGTCCTCCACGCGCCGAAAAAACGACCGCC
ATTTGGGCGCGCCGGCGCGCGCGTCGCGTCCGACCAACCCGTCCGTCGCG
TCGCTGTCGGAGCGCATCGGCCGCCGCGAGCACGCCAGCCGCGCGCAGAT
CGCAAAGCGACTGCGCGGCGCCCACCCCATCGCCTCCTCCTCCGTGTCGT
CGCTCACGGAGCTGGCCGCCTCGCAGCACCCTTCTGTCAGCGCCGCCGCC
GCCGCCGCGCATGCGTCCGCGCTGCGCCGACACCGCCGCCGCGCCTCCGA
GTCGGGCGTGCCCGCCACGTACTTGTCGCACCACAAGCGCGCGCACTCCC
CgccgcagcagcagcaacagcagcagcTCAACGCGTCCGCGCCCGTGCCG
CTCAATACGCGCCGCTGCCCGCTGGAGCTGCACCACTTCACGCTCAACAA
GATGCTGGGGTCCGGCGGCACCGCCACCGTGTTTCGCGCAGAGGTTGTGC
CCGAGTCGCTGGCCGCTTCGTACATTGCGCCCAACGAGCTGGCGCTCAAG
GCCGTGTCGAAGAAGGGCCTTACGCGACGCGCGCAGCACTACTTGGCGAG
GGAGATTGCCATTCATCGCAATTTGGAACACCCCAACATTGCTGCCTTGT
ACGAGGTGTTTGAAGACTCTGCTGGCATTTATCTTGCCATGGAGCTGTTG
AAGGGCAATGATTTGTACACCGCTCTCAAGAGGGAGCGCCGCGGCTTTCC
AGAGCCTCTTGCCTTGCAAATATGCGCCCAGGTGCTGGACGCCTTGCGCT
ACATGCATTCGCTTGGCTACGCGCATCGCGACGTCAAGCCGGAGAACATC
ATGTTCACGGAAAAGCCCTTCTACGCGGATGGCAAACTGGCGCCAGTCAA
GCTTGTCGACTTTGGCTTGGCGAGTGCACGCGACCCGAACGCGTCGGAAA
AGGAGAAGCTCAGCTCTGAAAAGTGCGGCACTGTGCGCTATGCCGCGCCG
GAAATCGTTACCGAGACTGCCTATGTTCCAGAGCTTTGCGACATTTGGAG
TGTGGGCATTGTGCTCTACTCAATTATCGCGCATCGAAACCCGTACACCG
GACGTACGGAGAGAGAGGTGTTGCAACAGATTGCAAACACCCCGCTTTCG
TTCAACTCTCCCGAGTGGGAGCGAGTGAGCAATGACACCAAGCAGTTCAT
TGGAGCTTGTCTTTCTCTCAAGCCTTCCGACCGACCGAATGCAGCGCGCG
CGTTGGAAGAGGTGAATCGAATCAGCAACATGCTCGCTGACAGGCAGGTG
GGTGATTCATTTACAAGCAAGGATCACCCCACTCACATGCGTTCATCTGG
CAAGAGACGCCAGCAAGAAATGTTTCGGGAAGATGTCTCTGGCTTCTCCA
GCCATGTCACTCCGGACAGCAGCGCAAGTAATAGTCGTCGCCGTGATGGT
TCCAGTGGTGACGCCAATGACTCGTCGCCGAGCAACAGCGGCGACGGCAG
TGCGCATCCAACAAACTTTTTGGATGGTCTATTAGCCTGGTTCAGTGGTG
GATCCACACCGGAGAGAAACGGTTCTGACAACCCGCAATAG

Coding sequence (CDS) from alignment at tig00000045_pilon:338268..340058+

>Ggra6041.t1 ID=Ggra6041.t1|Name=Ggra6041.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000045_pilon:338268..340058+ (Gracilaria gracilis GNS1m male)
ATGCACTCCTCCCCGCTAACTCCGCCCCCCTCTACCGACCCCGCCGCCGC
CGCCACCACCACCACCTTGCGCGCCGCGCGCCGTCTCTCCGCCTCCCAAC
TGCAGCCGCAACCGTTACCATCGCCGCTCCCCGCGCAACAGCCGTCGCAA
TCCACCGCCGCGCCGCCGCGCCCGTGCAGCCCGCCGTCGCCGCCGCCGCC
GCGCGGCCTTCAATTCACCATGTCCTCCACGCGCCGAAAAAACGACCGCC
ATTTGGGCGCGCCGGCGCGCGCGTCGCGTCCGACCAACCCGTCCGTCGCG
TCGCTGTCGGAGCGCATCGGCCGCCGCGAGCACGCCAGCCGCGCGCAGAT
CGCAAAGCGACTGCGCGGCGCCCACCCCATCGCCTCCTCCTCCGTGTCGT
CGCTCACGGAGCTGGCCGCCTCGCAGCACCCTTCTGTCAGCGCCGCCGCC
GCCGCCGCGCATGCGTCCGCGCTGCGCCGACACCGCCGCCGCGCCTCCGA
GTCGGGCGTGCCCGCCACGTACTTGTCGCACCACAAGCGCGCGCACTCCC
CgccgcagcagcagcaacagcagcagcTCAACGCGTCCGCGCCCGTGCCG
CTCAATACGCGCCGCTGCCCGCTGGAGCTGCACCACTTCACGCTCAACAA
GATGCTGGGGTCCGGCGGCACCGCCACCGTGTTTCGCGCAGAGGTTGTGC
CCGAGTCGCTGGCCGCTTCGTACATTGCGCCCAACGAGCTGGCGCTCAAG
GCCGTGTCGAAGAAGGGCCTTACGCGACGCGCGCAGCACTACTTGGCGAG
GGAGATTGCCATTCATCGCAATTTGGAACACCCCAACATTGCTGCCTTGT
ACGAGGTGTTTGAAGACTCTGCTGGCATTTATCTTGCCATGGAGCTGTTG
AAGGGCAATGATTTGTACACCGCTCTCAAGAGGGAGCGCCGCGGCTTTCC
AGAGCCTCTTGCCTTGCAAATATGCGCCCAGGTGCTGGACGCCTTGCGCT
ACATGCATTCGCTTGGCTACGCGCATCGCGACGTCAAGCCGGAGAACATC
ATGTTCACGGAAAAGCCCTTCTACGCGGATGGCAAACTGGCGCCAGTCAA
GCTTGTCGACTTTGGCTTGGCGAGTGCACGCGACCCGAACGCGTCGGAAA
AGGAGAAGCTCAGCTCTGAAAAGTGCGGCACTGTGCGCTATGCCGCGCCG
GAAATCGTTACCGAGACTGCCTATGTTCCAGAGCTTTGCGACATTTGGAG
TGTGGGCATTGTGCTCTACTCAATTATCGCGCATCGAAACCCGTACACCG
GACGTACGGAGAGAGAGGTGTTGCAACAGATTGCAAACACCCCGCTTTCG
TTCAACTCTCCCGAGTGGGAGCGAGTGAGCAATGACACCAAGCAGTTCAT
TGGAGCTTGTCTTTCTCTCAAGCCTTCCGACCGACCGAATGCAGCGCGCG
CGTTGGAAGAGGTGAATCGAATCAGCAACATGCTCGCTGACAGGCAGGTG
GGTGATTCATTTACAAGCAAGGATCACCCCACTCACATGCGTTCATCTGG
CAAGAGACGCCAGCAAGAAATGTTTCGGGAAGATGTCTCTGGCTTCTCCA
GCCATGTCACTCCGGACAGCAGCGCAAGTAATAGTCGTCGCCGTGATGGT
TCCAGTGGTGACGCCAATGACTCGTCGCCGAGCAACAGCGGCGACGGCAG
TGCGCATCCAACAAACTTTTTGGATGGTCTATTAGCCTGGTTCAGTGGTG
GATCCACACCGGAGAGAAACGGTTCTGACAACCCGCAATAG