Ggra604.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra604.t1
Unique NameGgra604.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length768
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:120874..123177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra604Ggra604Gracilaria gracilis GNS1m malegenetig00000203_pilon 120874..123177 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra604.t1.stop1Ggra604.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 120874..120876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra604.t1.CDS1Ggra604.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 120874..123177 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra604.t1.exon1Ggra604.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 120874..123177 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra604.t1.start1Ggra604.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 123175..123177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra604.t1Ggra604.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 120874..123177 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra604.t1 ID=Ggra604.t1|Name=Ggra604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp
MDEVLSLKPSVAIKRLQAAVRESQGTTRASYAVKNRPEWWKENLNVTLPD
DTIAKTGAFVSHSKCAWKPEQVQAALVLFYHHLNGDNFSEPQDPLESNGI
TPPRSRTKDEQVKLELRPVRTRNRTGRARLRAVHAPHLSSQKFASEPLIR
SPRPPDRKKGVTFQDEHEVNVHHTPPRNFQRKKRGPIKITPEPSHESSPS
TATSSYRLDKTKELNEANLESDTEQQQSSPSPSPVRRAAPRRLGRKASVK
EPPALIHTRSNSIRQNLSGSMKEESVSNKAHHESRLISKKKRKQRVHKTA
ESGTKLSPEVIVIHSDASPAIGSGSKTESKLSPSVTLPISRRRSSRLSTA
EDLTPTQEHGVKRTLDDTLAEVRTPLVTLKNQENKTVTRDSKRRKTPGKK
VVVRSTRKSSRKAAGGANLTLDNVVVQKENMHPRGDSITEANGADSQLVL
RGPQSPRLRSPRRTSQPPGVSHQERLDDASVEDSEENCEALVENAVHEEG
VGKGTINEDDKELDEDEDEEAMTEEEKKEHYDAFMTAIARMEKERDKCCA
KLEAYRQIKCEALQNEVEQKVNNLNHLCKMRLMRMSEQELSTLVGQMVYE
LDGDVNNLLVKEMEGVADSILNEGGDGVAPEAGSSSVRMQLEALKTPKAR
SLRKAVAAATTERKRVNRERCVATRASVRRSTRKAAQTATARTREMLASA
ARPKNVASIRNNVGTAEQRGDTETEGMSAPVMAAVASEIARLRGMTNSRE
GLRAFKAQLDNAFGEIV*
back to top

spliced messenger RNA

>Ggra604.t1 ID=Ggra604.t1|Name=Ggra604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00000203_pilon:120874..123177- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGGTTTTGTCACTGAAACCCAGCGTGGCTATCAAGCGATTGCA
GGCGGCTGTTCGCGAATCGCAGGGCACTACTCGTGCTTCTTATGCCGTGA
AAAACCGCCCTGAATGGTGGAAGGAGAATCTTAACGTCACTCTGCCCGAT
GATACCATCGCGAAAACCGGAGCGTTTGTATCCCATTCCAAATGTGCATG
GAAGCCAGAGCAAGTGCAGGCTGCACTGGTTCTTTTTTATCACCATTTGA
ACGGTGACAACTTCTCTGAGCCACAAGACCCTTTAGAATCGAATGGCATC
ACTCCACCGAGATCGAGAACAAAAGATGAACAAGTTAAGTTAGAACTGCG
ACCAGTCAGAACAAGGAACAGAACGGGACGCGCTCGTCTTCGAGCTGTAC
ATGCACCTCATTTATCATCACAAAAATTCGCATCAGAGCCTCTAATACGT
TCACCAAGACCACCCGACAGAAAAAAGGGTGTTACTTTTCAAGACGAACA
TGAAGTAAATGTTCATCACACTCCGCCGCGCAATTTTCAGCGGAAGAAAC
GCGGCCCCATCAAGATTACACCCGAGCCGAGCCACGAATCATCTCCAAGT
ACTGCCACCTCATCTTATCGTCTTGACAAGACGAAAGAATTAAATGAGGC
GAACCTTGAGTCTGATACAGAACAACAGCAATCAAGTCCGTCTCCATCAC
CCGTGCGACGGGCGGCTCCTAGGAGGTTAGGGAGGAAGGCGAGCGTGAAG
GAACCCCCGGCTCTTATTCATACCAGGTCAAATTCCATTCGACAAAACCT
CTCAGGTTCTATGAAAGAAGAATCCGTATCCAACAAAGCCCATCATGAAA
GTCGTCTAATTTCGAAGAAGAAACGCAAGCAGAGGGTGCACAAAACTGCT
GAAAGCGGTACAAAACTTTCACCAGAAGTGATTGTGATTCATAGCGATGC
TTCACCCGCAATCGGCTCCGGTTCCAAAACAGAAAGTAAATTATCACCTA
GCGTGACGTTGCCTATCAGCCGAAGACGGAGTTCAAGGCTTTCTACGGCT
GAAGACTTGACGCCAACACAAGAGCATGGAGTGAAGAGAACTTTGGATGA
TACATTGGCGGAAGTTAGAACCCCTCTGGTTACATTGAAGAATCAAGAGA
ACAAAACTGTCACAAGAGATTCTAAACGGAGAAAGACCCCTGGCAAGAAA
GTAGTGGTCCGGAGTACTCGGAAGAGCAGCAGAAAAGCAGCTGGCGGTGC
AAATTTGACTCTTGACAATGTGGTTGTTCAAAAGGAGAACATGCATCCGA
GGGGGGATTCTATAACGGAAGCGAACGGAGCTGATAGCCAACTGGTGTTG
AGAGGACCACAAAGTCCCAGATTACGATCACCAAGGCGAACAAGTCAGCC
ACCGGGTGTAAGTCATCAAGAGAGATTAGACGACGCTTCAGTTGAAGACT
CAGAAGAAAACTGTGAAGCGTTGGTTGAGAATGCTGTCCATGAAGAAGGG
GTTGGAAAAGGTACCATCAACGAAGATGACAAAGAATTGGACGAAGACGA
GGATGAGGAAGCCATGACCGAAGAAGAAAAGAAGGAGCATTATGATGCAT
TCATGACAGCAATCGCAAGGATGGAAAAAGAACGTGATAAATGTTGTGCA
AAGTTAGAAGCATATCGACAAATCAAGTGCGAAGCTTTGCAGAACGAGGT
AGAACAAAAGGTGAACAATCTGAACCATCTGTGCAAAATGAGGCTGATGC
GTATGAGCGAGCAGGAGTTGTCGACTTTGGTGGGACAAATGGTTTATGAA
CTTGATGGCGACGTGAATAACCTGCTGGTGAAGGAAATGGAAGGTGTAGC
AGACAGCATTCTGAACGAAGGCGGGGATGGAGTAGCCCCAGAAGCTGGTT
CAAGCAGCGTACGAATGCAATTGGAAGCACTGAAGACACCAAAAGCGCGC
TCTCTACGCAAGGCAGTGGCAGCGGCAACTACCGAACGAAAGCGGGTGAA
CCGCGAACGCTGTGTGGCAACTCGCGCAAGTGTACGACGCTCTACGCGAA
AGGCAGCTCAGACCGCCACAGCACGCACTAGAGAAATGTTGGCAAGCGCG
GCTCGACCGAAGAACGTTGCGAGCATTCGGAACAACGTAGGGACTGCTGA
GCAGCGAGGCGACACGGAGACTGAAGGTATGAGCGCGCCAGTTATGGCAG
CGGTGGCGAGTGAGATTGCTAGACTGAGAGGAATGACGAATTCAAGGGAG
GGGTTGAGGGCGTTCAAGGCACAGCTGGACAACGCTTTCGGTGAGATTGT
TTAA
back to top

protein sequence of Ggra604.t1

>Ggra604.t1 ID=Ggra604.t1|Name=Ggra604.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=768bp
MDEVLSLKPSVAIKRLQAAVRESQGTTRASYAVKNRPEWWKENLNVTLPD
DTIAKTGAFVSHSKCAWKPEQVQAALVLFYHHLNGDNFSEPQDPLESNGI
TPPRSRTKDEQVKLELRPVRTRNRTGRARLRAVHAPHLSSQKFASEPLIR
SPRPPDRKKGVTFQDEHEVNVHHTPPRNFQRKKRGPIKITPEPSHESSPS
TATSSYRLDKTKELNEANLESDTEQQQSSPSPSPVRRAAPRRLGRKASVK
EPPALIHTRSNSIRQNLSGSMKEESVSNKAHHESRLISKKKRKQRVHKTA
ESGTKLSPEVIVIHSDASPAIGSGSKTESKLSPSVTLPISRRRSSRLSTA
EDLTPTQEHGVKRTLDDTLAEVRTPLVTLKNQENKTVTRDSKRRKTPGKK
VVVRSTRKSSRKAAGGANLTLDNVVVQKENMHPRGDSITEANGADSQLVL
RGPQSPRLRSPRRTSQPPGVSHQERLDDASVEDSEENCEALVENAVHEEG
VGKGTINEDDKELDEDEDEEAMTEEEKKEHYDAFMTAIARMEKERDKCCA
KLEAYRQIKCEALQNEVEQKVNNLNHLCKMRLMRMSEQELSTLVGQMVYE
LDGDVNNLLVKEMEGVADSILNEGGDGVAPEAGSSSVRMQLEALKTPKAR
SLRKAVAAATTERKRVNRERCVATRASVRRSTRKAAQTATARTREMLASA
ARPKNVASIRNNVGTAEQRGDTETEGMSAPVMAAVASEIARLRGMTNSRE
GLRAFKAQLDNAFGEIV*
back to top

mRNA from alignment at tig00000203_pilon:120874..123177-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra604.t1 ID=Ggra604.t1|Name=Ggra604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00000203_pilon:120874..123177- (Gracilaria gracilis GNS1m male)
ATGGATGAGGTTTTGTCACTGAAACCCAGCGTGGCTATCAAGCGATTGCA
GGCGGCTGTTCGCGAATCGCAGGGCACTACTCGTGCTTCTTATGCCGTGA
AAAACCGCCCTGAATGGTGGAAGGAGAATCTTAACGTCACTCTGCCCGAT
GATACCATCGCGAAAACCGGAGCGTTTGTATCCCATTCCAAATGTGCATG
GAAGCCAGAGCAAGTGCAGGCTGCACTGGTTCTTTTTTATCACCATTTGA
ACGGTGACAACTTCTCTGAGCCACAAGACCCTTTAGAATCGAATGGCATC
ACTCCACCGAGATCGAGAACAAAAGATGAACAAGTTAAGTTAGAACTGCG
ACCAGTCAGAACAAGGAACAGAACGGGACGCGCTCGTCTTCGAGCTGTAC
ATGCACCTCATTTATCATCACAAAAATTCGCATCAGAGCCTCTAATACGT
TCACCAAGACCACCCGACAGAAAAAAGGGTGTTACTTTTCAAGACGAACA
TGAAGTAAATGTTCATCACACTCCGCCGCGCAATTTTCAGCGGAAGAAAC
GCGGCCCCATCAAGATTACACCCGAGCCGAGCCACGAATCATCTCCAAGT
ACTGCCACCTCATCTTATCGTCTTGACAAGACGAAAGAATTAAATGAGGC
GAACCTTGAGTCTGATACAGAACAACAGCAATCAAGTCCGTCTCCATCAC
CCGTGCGACGGGCGGCTCCTAGGAGGTTAGGGAGGAAGGCGAGCGTGAAG
GAACCCCCGGCTCTTATTCATACCAGGTCAAATTCCATTCGACAAAACCT
CTCAGGTTCTATGAAAGAAGAATCCGTATCCAACAAAGCCCATCATGAAA
GTCGTCTAATTTCGAAGAAGAAACGCAAGCAGAGGGTGCACAAAACTGCT
GAAAGCGGTACAAAACTTTCACCAGAAGTGATTGTGATTCATAGCGATGC
TTCACCCGCAATCGGCTCCGGTTCCAAAACAGAAAGTAAATTATCACCTA
GCGTGACGTTGCCTATCAGCCGAAGACGGAGTTCAAGGCTTTCTACGGCT
GAAGACTTGACGCCAACACAAGAGCATGGAGTGAAGAGAACTTTGGATGA
TACATTGGCGGAAGTTAGAACCCCTCTGGTTACATTGAAGAATCAAGAGA
ACAAAACTGTCACAAGAGATTCTAAACGGAGAAAGACCCCTGGCAAGAAA
GTAGTGGTCCGGAGTACTCGGAAGAGCAGCAGAAAAGCAGCTGGCGGTGC
AAATTTGACTCTTGACAATGTGGTTGTTCAAAAGGAGAACATGCATCCGA
GGGGGGATTCTATAACGGAAGCGAACGGAGCTGATAGCCAACTGGTGTTG
AGAGGACCACAAAGTCCCAGATTACGATCACCAAGGCGAACAAGTCAGCC
ACCGGGTGTAAGTCATCAAGAGAGATTAGACGACGCTTCAGTTGAAGACT
CAGAAGAAAACTGTGAAGCGTTGGTTGAGAATGCTGTCCATGAAGAAGGG
GTTGGAAAAGGTACCATCAACGAAGATGACAAAGAATTGGACGAAGACGA
GGATGAGGAAGCCATGACCGAAGAAGAAAAGAAGGAGCATTATGATGCAT
TCATGACAGCAATCGCAAGGATGGAAAAAGAACGTGATAAATGTTGTGCA
AAGTTAGAAGCATATCGACAAATCAAGTGCGAAGCTTTGCAGAACGAGGT
AGAACAAAAGGTGAACAATCTGAACCATCTGTGCAAAATGAGGCTGATGC
GTATGAGCGAGCAGGAGTTGTCGACTTTGGTGGGACAAATGGTTTATGAA
CTTGATGGCGACGTGAATAACCTGCTGGTGAAGGAAATGGAAGGTGTAGC
AGACAGCATTCTGAACGAAGGCGGGGATGGAGTAGCCCCAGAAGCTGGTT
CAAGCAGCGTACGAATGCAATTGGAAGCACTGAAGACACCAAAAGCGCGC
TCTCTACGCAAGGCAGTGGCAGCGGCAACTACCGAACGAAAGCGGGTGAA
CCGCGAACGCTGTGTGGCAACTCGCGCAAGTGTACGACGCTCTACGCGAA
AGGCAGCTCAGACCGCCACAGCACGCACTAGAGAAATGTTGGCAAGCGCG
GCTCGACCGAAGAACGTTGCGAGCATTCGGAACAACGTAGGGACTGCTGA
GCAGCGAGGCGACACGGAGACTGAAGGTATGAGCGCGCCAGTTATGGCAG
CGGTGGCGAGTGAGATTGCTAGACTGAGAGGAATGACGAATTCAAGGGAG
GGGTTGAGGGCGTTCAAGGCACAGCTGGACAACGCTTTCGGTGAGATTGT
TTAA
back to top

Coding sequence (CDS) from alignment at tig00000203_pilon:120874..123177-

>Ggra604.t1 ID=Ggra604.t1|Name=Ggra604.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2304bp|location=Sequence derived from alignment at tig00000203_pilon:120874..123177- (Gracilaria gracilis GNS1m male)
ATGGATGAGGTTTTGTCACTGAAACCCAGCGTGGCTATCAAGCGATTGCA
GGCGGCTGTTCGCGAATCGCAGGGCACTACTCGTGCTTCTTATGCCGTGA
AAAACCGCCCTGAATGGTGGAAGGAGAATCTTAACGTCACTCTGCCCGAT
GATACCATCGCGAAAACCGGAGCGTTTGTATCCCATTCCAAATGTGCATG
GAAGCCAGAGCAAGTGCAGGCTGCACTGGTTCTTTTTTATCACCATTTGA
ACGGTGACAACTTCTCTGAGCCACAAGACCCTTTAGAATCGAATGGCATC
ACTCCACCGAGATCGAGAACAAAAGATGAACAAGTTAAGTTAGAACTGCG
ACCAGTCAGAACAAGGAACAGAACGGGACGCGCTCGTCTTCGAGCTGTAC
ATGCACCTCATTTATCATCACAAAAATTCGCATCAGAGCCTCTAATACGT
TCACCAAGACCACCCGACAGAAAAAAGGGTGTTACTTTTCAAGACGAACA
TGAAGTAAATGTTCATCACACTCCGCCGCGCAATTTTCAGCGGAAGAAAC
GCGGCCCCATCAAGATTACACCCGAGCCGAGCCACGAATCATCTCCAAGT
ACTGCCACCTCATCTTATCGTCTTGACAAGACGAAAGAATTAAATGAGGC
GAACCTTGAGTCTGATACAGAACAACAGCAATCAAGTCCGTCTCCATCAC
CCGTGCGACGGGCGGCTCCTAGGAGGTTAGGGAGGAAGGCGAGCGTGAAG
GAACCCCCGGCTCTTATTCATACCAGGTCAAATTCCATTCGACAAAACCT
CTCAGGTTCTATGAAAGAAGAATCCGTATCCAACAAAGCCCATCATGAAA
GTCGTCTAATTTCGAAGAAGAAACGCAAGCAGAGGGTGCACAAAACTGCT
GAAAGCGGTACAAAACTTTCACCAGAAGTGATTGTGATTCATAGCGATGC
TTCACCCGCAATCGGCTCCGGTTCCAAAACAGAAAGTAAATTATCACCTA
GCGTGACGTTGCCTATCAGCCGAAGACGGAGTTCAAGGCTTTCTACGGCT
GAAGACTTGACGCCAACACAAGAGCATGGAGTGAAGAGAACTTTGGATGA
TACATTGGCGGAAGTTAGAACCCCTCTGGTTACATTGAAGAATCAAGAGA
ACAAAACTGTCACAAGAGATTCTAAACGGAGAAAGACCCCTGGCAAGAAA
GTAGTGGTCCGGAGTACTCGGAAGAGCAGCAGAAAAGCAGCTGGCGGTGC
AAATTTGACTCTTGACAATGTGGTTGTTCAAAAGGAGAACATGCATCCGA
GGGGGGATTCTATAACGGAAGCGAACGGAGCTGATAGCCAACTGGTGTTG
AGAGGACCACAAAGTCCCAGATTACGATCACCAAGGCGAACAAGTCAGCC
ACCGGGTGTAAGTCATCAAGAGAGATTAGACGACGCTTCAGTTGAAGACT
CAGAAGAAAACTGTGAAGCGTTGGTTGAGAATGCTGTCCATGAAGAAGGG
GTTGGAAAAGGTACCATCAACGAAGATGACAAAGAATTGGACGAAGACGA
GGATGAGGAAGCCATGACCGAAGAAGAAAAGAAGGAGCATTATGATGCAT
TCATGACAGCAATCGCAAGGATGGAAAAAGAACGTGATAAATGTTGTGCA
AAGTTAGAAGCATATCGACAAATCAAGTGCGAAGCTTTGCAGAACGAGGT
AGAACAAAAGGTGAACAATCTGAACCATCTGTGCAAAATGAGGCTGATGC
GTATGAGCGAGCAGGAGTTGTCGACTTTGGTGGGACAAATGGTTTATGAA
CTTGATGGCGACGTGAATAACCTGCTGGTGAAGGAAATGGAAGGTGTAGC
AGACAGCATTCTGAACGAAGGCGGGGATGGAGTAGCCCCAGAAGCTGGTT
CAAGCAGCGTACGAATGCAATTGGAAGCACTGAAGACACCAAAAGCGCGC
TCTCTACGCAAGGCAGTGGCAGCGGCAACTACCGAACGAAAGCGGGTGAA
CCGCGAACGCTGTGTGGCAACTCGCGCAAGTGTACGACGCTCTACGCGAA
AGGCAGCTCAGACCGCCACAGCACGCACTAGAGAAATGTTGGCAAGCGCG
GCTCGACCGAAGAACGTTGCGAGCATTCGGAACAACGTAGGGACTGCTGA
GCAGCGAGGCGACACGGAGACTGAAGGTATGAGCGCGCCAGTTATGGCAG
CGGTGGCGAGTGAGATTGCTAGACTGAGAGGAATGACGAATTCAAGGGAG
GGGTTGAGGGCGTTCAAGGCACAGCTGGACAACGCTTTCGGTGAGATTGT
TTAA
back to top