Ggra6031.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6031.t1
Unique NameGgra6031.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:177183..177596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6031Ggra6031Gracilaria gracilis GNS1m malegenetig00000045_pilon 177183..177596 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6031.t1.start1Ggra6031.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 177183..177185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6031.t1.CDS1Ggra6031.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 177183..177596 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6031.t1.exon1Ggra6031.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 177183..177596 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6031.t1.stop1Ggra6031.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 177594..177596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6031.t1Ggra6031.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 177183..177596 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6031.t1 ID=Ggra6031.t1|Name=Ggra6031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=138bp
MAPTAFNSPQHLLRLNSARHPTSQQSKASRSRVVVMSRNNKKNKGFFNSL
KDSILRPIVSVPGSGRENQQLLECVFCKGTGSCDCDACKGSGKDALGTCL
MCDGKTYLQCTVCMGVGTVDRIRRGGTDDKNDFVVKK*
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spliced messenger RNA

>Ggra6031.t1 ID=Ggra6031.t1|Name=Ggra6031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00000045_pilon:177183..177596+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCAACTGCCTTCAATAGCCCCCAACACTTGCTGCGTCTCAACAG
TGCTCGCCATCCCACGTCGCAGCAGAGCAAAGCGAGCCGGTCGAGAGTGG
TTGTCATGTCAAGAAACAACAAGAAGAACAAAGGTTTCTTCAACAGTTTA
AAGGATTCCATTTTGCGCCCGATTGTCAGCGTGCCGGGCAGCGGCCGAGA
GAATCAACAGCTGTTAGAGTGCGTGTTTTGCAAAGGAACAGGTTCGTGTG
ACTGCGACGCATGCAAAGGATCTGGCAAGGATGCGCTTGGTACTTGTTTG
ATGTGCGACGGCAAGACCTACCTGCAATGCACCGTGTGCATGGGCGTGGG
CACGGTGGATCGCATTCGACGAGGTGGCACGGACGACAAGAACGACTTTG
TGGTGAAGAAATGA
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protein sequence of Ggra6031.t1

>Ggra6031.t1 ID=Ggra6031.t1|Name=Ggra6031.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=138bp
MAPTAFNSPQHLLRLNSARHPTSQQSKASRSRVVVMSRNNKKNKGFFNSL
KDSILRPIVSVPGSGRENQQLLECVFCKGTGSCDCDACKGSGKDALGTCL
MCDGKTYLQCTVCMGVGTVDRIRRGGTDDKNDFVVKK*
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mRNA from alignment at tig00000045_pilon:177183..177596+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6031.t1 ID=Ggra6031.t1|Name=Ggra6031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00000045_pilon:177183..177596+ (Gracilaria gracilis GNS1m male)
ATGGCGCCAACTGCCTTCAATAGCCCCCAACACTTGCTGCGTCTCAACAG
TGCTCGCCATCCCACGTCGCAGCAGAGCAAAGCGAGCCGGTCGAGAGTGG
TTGTCATGTCAAGAAACAACAAGAAGAACAAAGGTTTCTTCAACAGTTTA
AAGGATTCCATTTTGCGCCCGATTGTCAGCGTGCCGGGCAGCGGCCGAGA
GAATCAACAGCTGTTAGAGTGCGTGTTTTGCAAAGGAACAGGTTCGTGTG
ACTGCGACGCATGCAAAGGATCTGGCAAGGATGCGCTTGGTACTTGTTTG
ATGTGCGACGGCAAGACCTACCTGCAATGCACCGTGTGCATGGGCGTGGG
CACGGTGGATCGCATTCGACGAGGTGGCACGGACGACAAGAACGACTTTG
TGGTGAAGAAATGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:177183..177596+

>Ggra6031.t1 ID=Ggra6031.t1|Name=Ggra6031.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=414bp|location=Sequence derived from alignment at tig00000045_pilon:177183..177596+ (Gracilaria gracilis GNS1m male)
ATGGCGCCAACTGCCTTCAATAGCCCCCAACACTTGCTGCGTCTCAACAG
TGCTCGCCATCCCACGTCGCAGCAGAGCAAAGCGAGCCGGTCGAGAGTGG
TTGTCATGTCAAGAAACAACAAGAAGAACAAAGGTTTCTTCAACAGTTTA
AAGGATTCCATTTTGCGCCCGATTGTCAGCGTGCCGGGCAGCGGCCGAGA
GAATCAACAGCTGTTAGAGTGCGTGTTTTGCAAAGGAACAGGTTCGTGTG
ACTGCGACGCATGCAAAGGATCTGGCAAGGATGCGCTTGGTACTTGTTTG
ATGTGCGACGGCAAGACCTACCTGCAATGCACCGTGTGCATGGGCGTGGG
CACGGTGGATCGCATTCGACGAGGTGGCACGGACGACAAGAACGACTTTG
TGGTGAAGAAATGA
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