Ggra6030.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6030.t1
Unique NameGgra6030.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:174629..175939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR014568-PA
PFAMsLPMO_10
Max annot lvl33208|Metazoa
Evalue4.95e-16
EggNOG OGs28MU0@1|root,2QUC9@2759|Eukaryota,39XY1@33154|Opisthokonta,3BK2A@33208|Metazoa,3CZ3F@33213|Bilateria,41XB2@6656|Arthropoda
DescriptionLytic polysaccharide mono-oxygenase, cellulose-degrading
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6030Ggra6030Gracilaria gracilis GNS1m malegenetig00000045_pilon 174629..175939 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6030.t1.stop1Ggra6030.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 174629..174631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6030.t1.CDS1Ggra6030.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 174629..175939 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6030.t1.exon1Ggra6030.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 174629..175939 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6030.t1.start1Ggra6030.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 175937..175939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6030.t1Ggra6030.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 174629..175939 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6030.t1 ID=Ggra6030.t1|Name=Ggra6030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=437bp
MFLRRIAVVLTLLSLISSSAHAHGALETPRQRGALLKSEYFPTTIDPDAP
RDYFAHFPSGVKSSPKLSAKESQKITAGVRGWSPYDPYDPKFAWRAGVCG
DAVWRPQDHTKGGKYYYNATIVARYRQGGTIGIGTVITAHHNGFMEVHVC
DAAKCPNGDISRKCFLSGGCVQLNRAANAECDSGTSMKCGPIDRNYPGRW
YLPCSHDFTAGYDYYPPEYALFQIPNDFYCEHCVLQWYWATANDCNPPGV
LDYFDGPDRPNWGTCPGQSHAKGGVTRNKEPCEGPEFFAEEYYQCADITV
EPVSGARSAPRVMYNKMELTAGRTAPRAPEFGKGVFKQLLLWSDKAQNRQ
LRNGSTIDISMYDRIGIEAVVNKWVRKVNFYVDHELVYTGHSAPYFLYRD
TNEIPFYWDNKTVNREVTLGAEANDELTQVTLLFKK*
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spliced messenger RNA

>Ggra6030.t1 ID=Ggra6030.t1|Name=Ggra6030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000045_pilon:174629..175939- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCTCCGTCGAATCGCTGTTGTGCTCACGCTTCTGTCCCTCATATC
ATCGAGCGCCCACGCACATGGCGCTCTGGAAACGCCCCGTCAACGGGGCG
CACTTCTCAAGTCGGAGTACTTTCCAACCACCATTGACCCAGACGCCCCT
CGCGATTACTTTGCCCATTTCCCATCCGGCGTAAAGTCCAGTCCGAAGCT
CAGTGCAAAAGAGTCTCAGAAGATCACTGCCGGCGTCAGAGGCTGGTCCC
CATACGACCCGTACGATCCCAAGTTTGCGTGGCGTGCTGGCGTTTGCGGC
GACGCCGTGTGGCGCCCGCAGGACCATACTAAAGGCGGCAAGTACTACTA
CAATGCAACCATAGTTGCGCGTTATCGACAGGGGGGCACCATTGGAATTG
GAACCGTCATCACCGCTCATCACAATGGCTTTATGGAAGTTCATGTATGT
GACGCTGCGAAATGTCCGAATGGAGACATTTCTAGGAAATGCTTCCTTTC
GGGCGGGTGTGTGCAGCTCAACCGAGCGGCCAATGCAGAATGTGATTCGG
GAACGTCCATGAAATGTGGGCCCATTGATCGTAACTATCCCGGTCGTTGG
TACCTACCATGCTCACACGACTTCACGGCTGGATATGATTACTATCCTCC
AGAGTATGCTCTTTTCCAGATACCGAATGATTTCTACTGCGAGCATTGTG
TGCTGCAGTGGTATTGGGCTACCGCCAACGATTGTAATCCACCTGGGGTG
TTGGATTACTTTGATGGACCTGACCGACCGAACTGGGGAACCTGTCCTGG
GCAGAGCCACGCCAAGGGTGGCGTAACGCGAAACAAGGAACCCTGTGAGG
GTCCTGAATTCTTTGCAGAAGAATACTATCAGTGTGCGGACATCACTGTA
GAACCCGTCAGTGGCGCTAGGTCTGCTCCACGCGTAATGTACAATAAGAT
GGAGCTCACAGCAGGAAGAACAGCCCCTCGAGCGCCAGAGTTCGGGAAAG
GTGTTTTCAAGCAACTGCTGCTTTGGTCAGACAAGGCTCAGAACCGCCAG
CTTCGAAACGGCAGTACGATTGATATCAGCATGTATGACCGCATCGGCAT
AGAGGCTGTCGTGAACAAATGGGTTAGAAAGGTTAACTTTTATGTGGATC
ATGAACTTGTATATACTGGACATTCTGCTCCCTACTTTCTTTACCGTGAC
ACGAATGAGATACCGTTCTACTGGGATAACAAGACGGTAAACCGTGAAGT
GACACTGGGAGCCGAAGCTAACGATGAATTGACACAAGTAACATTGTTGT
TCAAAAAGTAG
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protein sequence of Ggra6030.t1

>Ggra6030.t1 ID=Ggra6030.t1|Name=Ggra6030.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=437bp
MFLRRIAVVLTLLSLISSSAHAHGALETPRQRGALLKSEYFPTTIDPDAP
RDYFAHFPSGVKSSPKLSAKESQKITAGVRGWSPYDPYDPKFAWRAGVCG
DAVWRPQDHTKGGKYYYNATIVARYRQGGTIGIGTVITAHHNGFMEVHVC
DAAKCPNGDISRKCFLSGGCVQLNRAANAECDSGTSMKCGPIDRNYPGRW
YLPCSHDFTAGYDYYPPEYALFQIPNDFYCEHCVLQWYWATANDCNPPGV
LDYFDGPDRPNWGTCPGQSHAKGGVTRNKEPCEGPEFFAEEYYQCADITV
EPVSGARSAPRVMYNKMELTAGRTAPRAPEFGKGVFKQLLLWSDKAQNRQ
LRNGSTIDISMYDRIGIEAVVNKWVRKVNFYVDHELVYTGHSAPYFLYRD
TNEIPFYWDNKTVNREVTLGAEANDELTQVTLLFKK*
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mRNA from alignment at tig00000045_pilon:174629..175939-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6030.t1 ID=Ggra6030.t1|Name=Ggra6030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000045_pilon:174629..175939- (Gracilaria gracilis GNS1m male)
ATGTTTCTCCGTCGAATCGCTGTTGTGCTCACGCTTCTGTCCCTCATATC
ATCGAGCGCCCACGCACATGGCGCTCTGGAAACGCCCCGTCAACGGGGCG
CACTTCTCAAGTCGGAGTACTTTCCAACCACCATTGACCCAGACGCCCCT
CGCGATTACTTTGCCCATTTCCCATCCGGCGTAAAGTCCAGTCCGAAGCT
CAGTGCAAAAGAGTCTCAGAAGATCACTGCCGGCGTCAGAGGCTGGTCCC
CATACGACCCGTACGATCCCAAGTTTGCGTGGCGTGCTGGCGTTTGCGGC
GACGCCGTGTGGCGCCCGCAGGACCATACTAAAGGCGGCAAGTACTACTA
CAATGCAACCATAGTTGCGCGTTATCGACAGGGGGGCACCATTGGAATTG
GAACCGTCATCACCGCTCATCACAATGGCTTTATGGAAGTTCATGTATGT
GACGCTGCGAAATGTCCGAATGGAGACATTTCTAGGAAATGCTTCCTTTC
GGGCGGGTGTGTGCAGCTCAACCGAGCGGCCAATGCAGAATGTGATTCGG
GAACGTCCATGAAATGTGGGCCCATTGATCGTAACTATCCCGGTCGTTGG
TACCTACCATGCTCACACGACTTCACGGCTGGATATGATTACTATCCTCC
AGAGTATGCTCTTTTCCAGATACCGAATGATTTCTACTGCGAGCATTGTG
TGCTGCAGTGGTATTGGGCTACCGCCAACGATTGTAATCCACCTGGGGTG
TTGGATTACTTTGATGGACCTGACCGACCGAACTGGGGAACCTGTCCTGG
GCAGAGCCACGCCAAGGGTGGCGTAACGCGAAACAAGGAACCCTGTGAGG
GTCCTGAATTCTTTGCAGAAGAATACTATCAGTGTGCGGACATCACTGTA
GAACCCGTCAGTGGCGCTAGGTCTGCTCCACGCGTAATGTACAATAAGAT
GGAGCTCACAGCAGGAAGAACAGCCCCTCGAGCGCCAGAGTTCGGGAAAG
GTGTTTTCAAGCAACTGCTGCTTTGGTCAGACAAGGCTCAGAACCGCCAG
CTTCGAAACGGCAGTACGATTGATATCAGCATGTATGACCGCATCGGCAT
AGAGGCTGTCGTGAACAAATGGGTTAGAAAGGTTAACTTTTATGTGGATC
ATGAACTTGTATATACTGGACATTCTGCTCCCTACTTTCTTTACCGTGAC
ACGAATGAGATACCGTTCTACTGGGATAACAAGACGGTAAACCGTGAAGT
GACACTGGGAGCCGAAGCTAACGATGAATTGACACAAGTAACATTGTTGT
TCAAAAAGTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:174629..175939-

>Ggra6030.t1 ID=Ggra6030.t1|Name=Ggra6030.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000045_pilon:174629..175939- (Gracilaria gracilis GNS1m male)
ATGTTTCTCCGTCGAATCGCTGTTGTGCTCACGCTTCTGTCCCTCATATC
ATCGAGCGCCCACGCACATGGCGCTCTGGAAACGCCCCGTCAACGGGGCG
CACTTCTCAAGTCGGAGTACTTTCCAACCACCATTGACCCAGACGCCCCT
CGCGATTACTTTGCCCATTTCCCATCCGGCGTAAAGTCCAGTCCGAAGCT
CAGTGCAAAAGAGTCTCAGAAGATCACTGCCGGCGTCAGAGGCTGGTCCC
CATACGACCCGTACGATCCCAAGTTTGCGTGGCGTGCTGGCGTTTGCGGC
GACGCCGTGTGGCGCCCGCAGGACCATACTAAAGGCGGCAAGTACTACTA
CAATGCAACCATAGTTGCGCGTTATCGACAGGGGGGCACCATTGGAATTG
GAACCGTCATCACCGCTCATCACAATGGCTTTATGGAAGTTCATGTATGT
GACGCTGCGAAATGTCCGAATGGAGACATTTCTAGGAAATGCTTCCTTTC
GGGCGGGTGTGTGCAGCTCAACCGAGCGGCCAATGCAGAATGTGATTCGG
GAACGTCCATGAAATGTGGGCCCATTGATCGTAACTATCCCGGTCGTTGG
TACCTACCATGCTCACACGACTTCACGGCTGGATATGATTACTATCCTCC
AGAGTATGCTCTTTTCCAGATACCGAATGATTTCTACTGCGAGCATTGTG
TGCTGCAGTGGTATTGGGCTACCGCCAACGATTGTAATCCACCTGGGGTG
TTGGATTACTTTGATGGACCTGACCGACCGAACTGGGGAACCTGTCCTGG
GCAGAGCCACGCCAAGGGTGGCGTAACGCGAAACAAGGAACCCTGTGAGG
GTCCTGAATTCTTTGCAGAAGAATACTATCAGTGTGCGGACATCACTGTA
GAACCCGTCAGTGGCGCTAGGTCTGCTCCACGCGTAATGTACAATAAGAT
GGAGCTCACAGCAGGAAGAACAGCCCCTCGAGCGCCAGAGTTCGGGAAAG
GTGTTTTCAAGCAACTGCTGCTTTGGTCAGACAAGGCTCAGAACCGCCAG
CTTCGAAACGGCAGTACGATTGATATCAGCATGTATGACCGCATCGGCAT
AGAGGCTGTCGTGAACAAATGGGTTAGAAAGGTTAACTTTTATGTGGATC
ATGAACTTGTATATACTGGACATTCTGCTCCCTACTTTCTTTACCGTGAC
ACGAATGAGATACCGTTCTACTGGGATAACAAGACGGTAAACCGTGAAGT
GACACTGGGAGCCGAAGCTAACGATGAATTGACACAAGTAACATTGTTGT
TCAAAAAGTAG
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