Ggra6029.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6029.t1
Unique Name	Ggra6029.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:171474..172475 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6029	Ggra6029	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 171474..172475 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6029.t1.start1	Ggra6029.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 171474..171476 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6029.t1.CDS1	Ggra6029.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 171474..172475 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6029.t1.exon1	Ggra6029.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 171474..172475 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6029.t1.stop1	Ggra6029.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 172473..172475 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6029.t1	Ggra6029.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 171474..172475 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:171474..172475+
coding sequence from alignment at tig00000045_pilon:171474..172475+

mRNA sequence

>Ggra6029.t1 ID=Ggra6029.t1|Name=Ggra6029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MVFMFIFAFLIVELSLALSFPVEDNVKPQVVRPEISKILNNGRSDDMNLS
SVSQTPQKPSEGKTHIVKKYLSSRSFRDISQKGTDDVSTEQVSSYEAKGA
GNDTDFRISMFDLNGSERPLSNLYTPSIYNFDRCTNLLQCYSYRCVEKRN
GFELPCDLGYCYCKSQNPACQSDINCLSGEFCAQIEGSTSICVSKALSNG
IQLTMDRCSDIRDCKPPRKCVSTTTGNRCFAHQPCIGDLQCVPGESCPTL
HGSAAYCTSNAYLNGPGLSGEHCFYNTDCKNPRLCATFALEPCEGREQCF
CFNPFRELAECSNDDDCTYGESCRRGACTSDSV*

spliced messenger RNA

>Ggra6029.t1 ID=Ggra6029.t1|Name=Ggra6029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000045_pilon:171474..172475+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATTTATGTTTATCTTCGCATTTCTGATCGTGGAACTTTCTCTTGC
TCTGTCTTTTCCAGTTGAAGACAACGTCAAGCCTCAGGTGGTGCGCCCGG
AAATCTCCAAAATTCTGAACAATGGAAGAAGTGATGATATGAACCTCTCT
TCGGTATCCCAAACTCCTCAGAAACCGTCTGAAGGAAAAACTCACATTGT
GAAAAAGTATTTATCCTCACGTTCTTTTAGAGACATCTCGCAAAAGGGTA
CGGATGATGTCAGTACTGAGCAAGTATCTTCGTATGAAGCAAAAGGAGCT
GGAAATGACACAGATTTCAGAATCTCCATGTTTGATCTAAATGGCAGTGA
ACGTCCGCTATCCAACCTTTACACCCCCAGTATATACAATTTCGACCGCT
GCACCAACTTACTTCAGTGCTATTCCTACCGATGTGTTGAAAAGAGAAAC
GGGTTCGAGCTCCCATGTGATCTGGGCTACTGCTACTGCAAGTCACAAAA
TCCAGCTTGTCAATCAGACATCAACTGCCTGTCTGGTGAATTCTGTGCCC
AGATTGAAGGTTCGACAAGCATTTGCGTCTCAAAAGCGCTGTCAAATGGC
ATTCAGCTGACAATGGACCGGTGCTCAGATATCAGAGATTGTAAACCTCC
AAGAAAGTGTGTTTCAACCACAACTGGAAACCGATGTTTCGCCCATCAGC
CTTGTATTGGCGACTTGCAGTGCGTCCCCGGGGAAAGCTGTCCAACTTTA
CACGGCTCTGCGGCATACTGTACATCAAATGCTTATCTGAATGGGCCTGG
ATTAAGCGGAGAGCATTGTTTCTATAACACAGATTGCAAGAATCCCAGAC
TCTGTGCTACATTTGCTCTAGAGCCGTGTGAAGGTCGTGAGCAATGCTTT
TGCTTCAACCCGTTTCGTGAGCTCGCGGAGTGTTCTAACGATGATGACTG
TACTTACGGAGAATCTTGTCGGCGTGGGGCATGCACCTCAGATTCTGTGT
AG

protein sequence of Ggra6029.t1

>Ggra6029.t1 ID=Ggra6029.t1|Name=Ggra6029.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MVFMFIFAFLIVELSLALSFPVEDNVKPQVVRPEISKILNNGRSDDMNLS
SVSQTPQKPSEGKTHIVKKYLSSRSFRDISQKGTDDVSTEQVSSYEAKGA
GNDTDFRISMFDLNGSERPLSNLYTPSIYNFDRCTNLLQCYSYRCVEKRN
GFELPCDLGYCYCKSQNPACQSDINCLSGEFCAQIEGSTSICVSKALSNG
IQLTMDRCSDIRDCKPPRKCVSTTTGNRCFAHQPCIGDLQCVPGESCPTL
HGSAAYCTSNAYLNGPGLSGEHCFYNTDCKNPRLCATFALEPCEGREQCF
CFNPFRELAECSNDDDCTYGESCRRGACTSDSV*

mRNA from alignment at tig00000045_pilon:171474..172475+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6029.t1 ID=Ggra6029.t1|Name=Ggra6029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000045_pilon:171474..172475+ (Gracilaria gracilis GNS1m male)
ATGGTATTTATGTTTATCTTCGCATTTCTGATCGTGGAACTTTCTCTTGC
TCTGTCTTTTCCAGTTGAAGACAACGTCAAGCCTCAGGTGGTGCGCCCGG
AAATCTCCAAAATTCTGAACAATGGAAGAAGTGATGATATGAACCTCTCT
TCGGTATCCCAAACTCCTCAGAAACCGTCTGAAGGAAAAACTCACATTGT
GAAAAAGTATTTATCCTCACGTTCTTTTAGAGACATCTCGCAAAAGGGTA
CGGATGATGTCAGTACTGAGCAAGTATCTTCGTATGAAGCAAAAGGAGCT
GGAAATGACACAGATTTCAGAATCTCCATGTTTGATCTAAATGGCAGTGA
ACGTCCGCTATCCAACCTTTACACCCCCAGTATATACAATTTCGACCGCT
GCACCAACTTACTTCAGTGCTATTCCTACCGATGTGTTGAAAAGAGAAAC
GGGTTCGAGCTCCCATGTGATCTGGGCTACTGCTACTGCAAGTCACAAAA
TCCAGCTTGTCAATCAGACATCAACTGCCTGTCTGGTGAATTCTGTGCCC
AGATTGAAGGTTCGACAAGCATTTGCGTCTCAAAAGCGCTGTCAAATGGC
ATTCAGCTGACAATGGACCGGTGCTCAGATATCAGAGATTGTAAACCTCC
AAGAAAGTGTGTTTCAACCACAACTGGAAACCGATGTTTCGCCCATCAGC
CTTGTATTGGCGACTTGCAGTGCGTCCCCGGGGAAAGCTGTCCAACTTTA
CACGGCTCTGCGGCATACTGTACATCAAATGCTTATCTGAATGGGCCTGG
ATTAAGCGGAGAGCATTGTTTCTATAACACAGATTGCAAGAATCCCAGAC
TCTGTGCTACATTTGCTCTAGAGCCGTGTGAAGGTCGTGAGCAATGCTTT
TGCTTCAACCCGTTTCGTGAGCTCGCGGAGTGTTCTAACGATGATGACTG
TACTTACGGAGAATCTTGTCGGCGTGGGGCATGCACCTCAGATTCTGTGT
AG

Coding sequence (CDS) from alignment at tig00000045_pilon:171474..172475+

>Ggra6029.t1 ID=Ggra6029.t1|Name=Ggra6029.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000045_pilon:171474..172475+ (Gracilaria gracilis GNS1m male)
ATGGTATTTATGTTTATCTTCGCATTTCTGATCGTGGAACTTTCTCTTGC
TCTGTCTTTTCCAGTTGAAGACAACGTCAAGCCTCAGGTGGTGCGCCCGG
AAATCTCCAAAATTCTGAACAATGGAAGAAGTGATGATATGAACCTCTCT
TCGGTATCCCAAACTCCTCAGAAACCGTCTGAAGGAAAAACTCACATTGT
GAAAAAGTATTTATCCTCACGTTCTTTTAGAGACATCTCGCAAAAGGGTA
CGGATGATGTCAGTACTGAGCAAGTATCTTCGTATGAAGCAAAAGGAGCT
GGAAATGACACAGATTTCAGAATCTCCATGTTTGATCTAAATGGCAGTGA
ACGTCCGCTATCCAACCTTTACACCCCCAGTATATACAATTTCGACCGCT
GCACCAACTTACTTCAGTGCTATTCCTACCGATGTGTTGAAAAGAGAAAC
GGGTTCGAGCTCCCATGTGATCTGGGCTACTGCTACTGCAAGTCACAAAA
TCCAGCTTGTCAATCAGACATCAACTGCCTGTCTGGTGAATTCTGTGCCC
AGATTGAAGGTTCGACAAGCATTTGCGTCTCAAAAGCGCTGTCAAATGGC
ATTCAGCTGACAATGGACCGGTGCTCAGATATCAGAGATTGTAAACCTCC
AAGAAAGTGTGTTTCAACCACAACTGGAAACCGATGTTTCGCCCATCAGC
CTTGTATTGGCGACTTGCAGTGCGTCCCCGGGGAAAGCTGTCCAACTTTA
CACGGCTCTGCGGCATACTGTACATCAAATGCTTATCTGAATGGGCCTGG
ATTAAGCGGAGAGCATTGTTTCTATAACACAGATTGCAAGAATCCCAGAC
TCTGTGCTACATTTGCTCTAGAGCCGTGTGAAGGTCGTGAGCAATGCTTT
TGCTTCAACCCGTTTCGTGAGCTCGCGGAGTGTTCTAACGATGATGACTG
TACTTACGGAGAATCTTGTCGGCGTGGGGCATGCACCTCAGATTCTGTGT
AG