Ggra6028.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6028.t1
Unique NameGgra6028.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:167255..168346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM5G863645_P01
PFAMsHydrolase_4
Max annot lvl35493|Streptophyta
KEGG rclassRC00020,RC00041
KEGG koko:K01054
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG ModuleM00098
Evalue3.92e-45
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota,37JG9@33090|Viridiplantae,3GEJG@35493|Streptophyta,3M22P@4447|Liliopsida,3I85V@38820|Poales
EC3.1.1.23
DescriptionSerine aminopeptidase, S33
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6028Ggra6028Gracilaria gracilis GNS1m malegenetig00000045_pilon 167255..168346 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6028.t1.stop1Ggra6028.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 167255..167257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6028.t1.CDS1Ggra6028.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 167255..168346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6028.t1.exon1Ggra6028.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 167255..168346 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6028.t1.start1Ggra6028.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 168344..168346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6028.t1Ggra6028.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 167255..168346 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6028.t1 ID=Ggra6028.t1|Name=Ggra6028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MEAALSWLFPTGHRVPSGRSPSFTQPLLPPSVATRPSPPPGVLACPLPQP
RSHARHATVGWRVDEWADHSAYYVLNSRGQRIFVQTWRPPQQRRSFWSRL
FPRRNRERGIVYIIHGLNDHSNKYTRVARAWVDSGYVVIAHDFHGHGRSD
GYRAYTSSMQHYVDDARHTIQHAKERLPRRLSSLPSFILAHSLGGAVAIH
LARDAPCGTFRGVMLTAPAVRVYPKPILKLFAPLLGTLAPLLPVQRLKFD
RRRRRVRQTEDDGYDVRDDPLVVRSPVRARVGYEVLKSCEKIMSEAERFK
VPVFVAHSRRDRVTNAKGTIDFHDRIGSSDKTVRLYDGGVHDLLAEKRGM
VMEDMVSWASKRL*
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spliced messenger RNA

>Ggra6028.t1 ID=Ggra6028.t1|Name=Ggra6028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000045_pilon:167255..168346- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGGCGCTTAGCTGGTTGTTTCCCACGGGACACCGTGTTCCCTC
TGGCCGCTCGCCGTCCTTCACCCAGCCGTTGTTGCCGCCTTCAGTGGCCA
CGCGACCGTCGCCTCCGCCCGGCGTTTTGGCATGCCCGCTTCCGCAGCCC
CGCTCGCACGCGCGTCATGCAACCGTTGGCTGGCGCGTGGACGAATGGGC
TGATCACAGTGCGTACTACGTGCTCAATTCGCGCGGGCAGCGAATCTTCG
TACAGACGTGGAGACCTCCACAACAGAGGCGTTCATTCTGGAGTCGTCTC
TTCCCGCGTCGTAACCGAGAACGTGGCATTGTTTACATCATACATGGCTT
GAATGATCACTCGAACAAGTACACGCGCGTGGCGAGAGCTTGGGTCGACT
CGGGCTATGTGGTGATTGCGCATGATTTTCATGGTCATGGACGGTCTGAT
GGCTACAGAGCATACACTTCGTCCATGCAGCATTATGTGGATGACGCACG
CCATACCATTCAACACGCAAAAGAACGACTGCCGAGACGACTTTCCTCGC
TTCCCAGCTTTATCTTGGCCCATTCTTTGGGCGGTGCCGTCGCAATTCAC
CTAGCCCGAGATGCTCCGTGTGGCACGTTTAGAGGAGTCATGCTCACGGC
GCCCGCCGTTCGCGTCTACCCGAAACCGATTTTGAAACTATTTGCACCGT
TGCTGGGAACTCTTGCGCCGTTGCTGCCGGTACAACGGCTCAAGTTTGAT
CGAAGGCGGCGGCGTGTGAGGCAGACGGAAGACGACGGTTACGACGTTCG
CGATGATCCATTGGTTGTACGTAGTCCTGTACGAGCTCGAGTTGGATATG
AAGTGCTCAAAAGTTGTGAAAAGATTATGAGCGAGGCAGAACGATTTAAA
GTTCCTGTCTTTGTCGCGCACTCTAGAAGGGATCGGGTGACGAACGCAAA
GGGTACCATTGATTTTCATGACCGTATTGGAAGCAGTGACAAGACTGTTC
GTTTATATGATGGAGGCGTTCATGACCTACTGGCTGAGAAGAGAGGTATG
GTGATGGAGGATATGGTTTCGTGGGCTTCCAAACGTCTGTAA
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protein sequence of Ggra6028.t1

>Ggra6028.t1 ID=Ggra6028.t1|Name=Ggra6028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MEAALSWLFPTGHRVPSGRSPSFTQPLLPPSVATRPSPPPGVLACPLPQP
RSHARHATVGWRVDEWADHSAYYVLNSRGQRIFVQTWRPPQQRRSFWSRL
FPRRNRERGIVYIIHGLNDHSNKYTRVARAWVDSGYVVIAHDFHGHGRSD
GYRAYTSSMQHYVDDARHTIQHAKERLPRRLSSLPSFILAHSLGGAVAIH
LARDAPCGTFRGVMLTAPAVRVYPKPILKLFAPLLGTLAPLLPVQRLKFD
RRRRRVRQTEDDGYDVRDDPLVVRSPVRARVGYEVLKSCEKIMSEAERFK
VPVFVAHSRRDRVTNAKGTIDFHDRIGSSDKTVRLYDGGVHDLLAEKRGM
VMEDMVSWASKRL*
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mRNA from alignment at tig00000045_pilon:167255..168346-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6028.t1 ID=Ggra6028.t1|Name=Ggra6028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000045_pilon:167255..168346- (Gracilaria gracilis GNS1m male)
ATGGAAGCGGCGCTTAGCTGGTTGTTTCCCACGGGACACCGTGTTCCCTC
TGGCCGCTCGCCGTCCTTCACCCAGCCGTTGTTGCCGCCTTCAGTGGCCA
CGCGACCGTCGCCTCCGCCCGGCGTTTTGGCATGCCCGCTTCCGCAGCCC
CGCTCGCACGCGCGTCATGCAACCGTTGGCTGGCGCGTGGACGAATGGGC
TGATCACAGTGCGTACTACGTGCTCAATTCGCGCGGGCAGCGAATCTTCG
TACAGACGTGGAGACCTCCACAACAGAGGCGTTCATTCTGGAGTCGTCTC
TTCCCGCGTCGTAACCGAGAACGTGGCATTGTTTACATCATACATGGCTT
GAATGATCACTCGAACAAGTACACGCGCGTGGCGAGAGCTTGGGTCGACT
CGGGCTATGTGGTGATTGCGCATGATTTTCATGGTCATGGACGGTCTGAT
GGCTACAGAGCATACACTTCGTCCATGCAGCATTATGTGGATGACGCACG
CCATACCATTCAACACGCAAAAGAACGACTGCCGAGACGACTTTCCTCGC
TTCCCAGCTTTATCTTGGCCCATTCTTTGGGCGGTGCCGTCGCAATTCAC
CTAGCCCGAGATGCTCCGTGTGGCACGTTTAGAGGAGTCATGCTCACGGC
GCCCGCCGTTCGCGTCTACCCGAAACCGATTTTGAAACTATTTGCACCGT
TGCTGGGAACTCTTGCGCCGTTGCTGCCGGTACAACGGCTCAAGTTTGAT
CGAAGGCGGCGGCGTGTGAGGCAGACGGAAGACGACGGTTACGACGTTCG
CGATGATCCATTGGTTGTACGTAGTCCTGTACGAGCTCGAGTTGGATATG
AAGTGCTCAAAAGTTGTGAAAAGATTATGAGCGAGGCAGAACGATTTAAA
GTTCCTGTCTTTGTCGCGCACTCTAGAAGGGATCGGGTGACGAACGCAAA
GGGTACCATTGATTTTCATGACCGTATTGGAAGCAGTGACAAGACTGTTC
GTTTATATGATGGAGGCGTTCATGACCTACTGGCTGAGAAGAGAGGTATG
GTGATGGAGGATATGGTTTCGTGGGCTTCCAAACGTCTGTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:167255..168346-

>Ggra6028.t1 ID=Ggra6028.t1|Name=Ggra6028.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000045_pilon:167255..168346- (Gracilaria gracilis GNS1m male)
ATGGAAGCGGCGCTTAGCTGGTTGTTTCCCACGGGACACCGTGTTCCCTC
TGGCCGCTCGCCGTCCTTCACCCAGCCGTTGTTGCCGCCTTCAGTGGCCA
CGCGACCGTCGCCTCCGCCCGGCGTTTTGGCATGCCCGCTTCCGCAGCCC
CGCTCGCACGCGCGTCATGCAACCGTTGGCTGGCGCGTGGACGAATGGGC
TGATCACAGTGCGTACTACGTGCTCAATTCGCGCGGGCAGCGAATCTTCG
TACAGACGTGGAGACCTCCACAACAGAGGCGTTCATTCTGGAGTCGTCTC
TTCCCGCGTCGTAACCGAGAACGTGGCATTGTTTACATCATACATGGCTT
GAATGATCACTCGAACAAGTACACGCGCGTGGCGAGAGCTTGGGTCGACT
CGGGCTATGTGGTGATTGCGCATGATTTTCATGGTCATGGACGGTCTGAT
GGCTACAGAGCATACACTTCGTCCATGCAGCATTATGTGGATGACGCACG
CCATACCATTCAACACGCAAAAGAACGACTGCCGAGACGACTTTCCTCGC
TTCCCAGCTTTATCTTGGCCCATTCTTTGGGCGGTGCCGTCGCAATTCAC
CTAGCCCGAGATGCTCCGTGTGGCACGTTTAGAGGAGTCATGCTCACGGC
GCCCGCCGTTCGCGTCTACCCGAAACCGATTTTGAAACTATTTGCACCGT
TGCTGGGAACTCTTGCGCCGTTGCTGCCGGTACAACGGCTCAAGTTTGAT
CGAAGGCGGCGGCGTGTGAGGCAGACGGAAGACGACGGTTACGACGTTCG
CGATGATCCATTGGTTGTACGTAGTCCTGTACGAGCTCGAGTTGGATATG
AAGTGCTCAAAAGTTGTGAAAAGATTATGAGCGAGGCAGAACGATTTAAA
GTTCCTGTCTTTGTCGCGCACTCTAGAAGGGATCGGGTGACGAACGCAAA
GGGTACCATTGATTTTCATGACCGTATTGGAAGCAGTGACAAGACTGTTC
GTTTATATGATGGAGGCGTTCATGACCTACTGGCTGAGAAGAGAGGTATG
GTGATGGAGGATATGGTTTCGTGGGCTTCCAAACGTCTGTAA
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