Ggra6025.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6025.t2
Unique NameGgra6025.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:162163..163062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX49376
Preferred nameHIS6
PFAMsHis_biosynth
Max annot lvl2759|Eukaryota
KEGG rclassRC00945
KEGG koko:K01814
KEGG ReactionR04640
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue8.48e-100
EggNOG OGsCOG0106@1|root,KOG3055@2759|Eukaryota
EC5.3.1.16
Description1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6025Ggra6025Gracilaria gracilis GNS1m malegenetig00000045_pilon 162009..163062 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t2.stop1Ggra6025.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 162163..162165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t2.CDS1Ggra6025.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 162163..163062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t2.exon1Ggra6025.t2.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 162163..163062 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t2.start1Ggra6025.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 163060..163062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6025.t2Ggra6025.t2Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 162163..163062 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6025.t2 ID=Ggra6025.t2|Name=Ggra6025.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
METMERQAGFVDSLPIQRTGSNRVLSMPARPASVGRGQIAMKIMRFRPCI
DIHQSRVKQIVGGTLTHKEMPETNFETDLSPAYFASMYRDDNLPGGHVIM
LGPGNEEAACEALQAFPGGMHVGGGIQPTTAGRFLDAGASHVIVTSYIFR
EGTIVWERVDEMIRTVGKNRLVLDVSCRERDGEYLVCTDRWQKWTDFKLN
PRNFERLGNLCDEILVHAVDFEGKMSGIDVKLIRSLAAWATVPVTYAGGV
RTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAVRWQREQETTCV*
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spliced messenger RNA

>Ggra6025.t2 ID=Ggra6025.t2|Name=Ggra6025.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000045_pilon:162163..163062- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACGATGGAGCGCCAAGCTGGGTTTGTTGATTCCTTGCCAATTCA
ACGCACCGGCTCGAACCGAGTTCTATCGATGCCTGCCAGACCAGCTTCGG
TGGGCAGAGGACAAATTGCTATGAAGATTATGCGTTTTCGCCCCTGCATT
GATATCCATCAAAGTCGTGTCAAGCAAATCGTTGGAGGAACCTTGACGCA
CAAAGAAATGCCAGAAACGAACTTTGAAACAGATCTGTCGCCTGCTTACT
TCGCGTCTATGTATCGCGATGATAATTTGCCAGGAGGCCATGTCATAATG
CTTGGACCCGGAAACGAAGAAGCCGCATGTGAAGCATTACAAGCTTTCCC
AGGGGGAATGCATGTTGGTGGTGGCATCCAGCCGACTACGGCTGGTCGCT
TTTTGGATGCCGGAGCTAGTCACGTAATCGTAACCTCGTACATATTCCGT
GAAGGAACAATCGTATGGGAAAGGGTAGACGAAATGATTCGCACCGTTGG
CAAGAATCGTCTTGTCCTAGATGTCAGCTGTCGAGAACGTGATGGTGAAT
ACCTTGTGTGCACCGATAGGTGGCAGAAGTGGACAGACTTCAAACTTAAT
CCAAGAAACTTTGAAAGGCTGGGTAATTTATGCGACGAAATCTTAGTGCA
CGCCGTAGACTTCGAAGGCAAGATGTCCGGCATTGATGTGAAACTGATCC
GCTCGCTTGCGGCGTGGGCAACTGTACCGGTTACCTATGCCGGTGGAGTT
CGAACATTGATCGATTTGGAACTGGCCAAATCAGAAGGCCGAAGTCTTGT
GGATGTCACAATTGGGTCTGCGCTAGACATCTTCGGTGGTCAAGTGAAAT
ACAAGGATGCGGTGCGATGGCAGCGCGAGCAGGAGACAACATGTGTCTGA
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protein sequence of Ggra6025.t2

>Ggra6025.t2 ID=Ggra6025.t2|Name=Ggra6025.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
METMERQAGFVDSLPIQRTGSNRVLSMPARPASVGRGQIAMKIMRFRPCI
DIHQSRVKQIVGGTLTHKEMPETNFETDLSPAYFASMYRDDNLPGGHVIM
LGPGNEEAACEALQAFPGGMHVGGGIQPTTAGRFLDAGASHVIVTSYIFR
EGTIVWERVDEMIRTVGKNRLVLDVSCRERDGEYLVCTDRWQKWTDFKLN
PRNFERLGNLCDEILVHAVDFEGKMSGIDVKLIRSLAAWATVPVTYAGGV
RTLIDLELAKSEGRSLVDVTIGSALDIFGGQVKYKDAVRWQREQETTCV*
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mRNA from alignment at tig00000045_pilon:162163..163062-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6025.t2 ID=Ggra6025.t2|Name=Ggra6025.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000045_pilon:162163..163062- (Gracilaria gracilis GNS1m male)
ATGGAAACGATGGAGCGCCAAGCTGGGTTTGTTGATTCCTTGCCAATTCA
ACGCACCGGCTCGAACCGAGTTCTATCGATGCCTGCCAGACCAGCTTCGG
TGGGCAGAGGACAAATTGCTATGAAGATTATGCGTTTTCGCCCCTGCATT
GATATCCATCAAAGTCGTGTCAAGCAAATCGTTGGAGGAACCTTGACGCA
CAAAGAAATGCCAGAAACGAACTTTGAAACAGATCTGTCGCCTGCTTACT
TCGCGTCTATGTATCGCGATGATAATTTGCCAGGAGGCCATGTCATAATG
CTTGGACCCGGAAACGAAGAAGCCGCATGTGAAGCATTACAAGCTTTCCC
AGGGGGAATGCATGTTGGTGGTGGCATCCAGCCGACTACGGCTGGTCGCT
TTTTGGATGCCGGAGCTAGTCACGTAATCGTAACCTCGTACATATTCCGT
GAAGGAACAATCGTATGGGAAAGGGTAGACGAAATGATTCGCACCGTTGG
CAAGAATCGTCTTGTCCTAGATGTCAGCTGTCGAGAACGTGATGGTGAAT
ACCTTGTGTGCACCGATAGGTGGCAGAAGTGGACAGACTTCAAACTTAAT
CCAAGAAACTTTGAAAGGCTGGGTAATTTATGCGACGAAATCTTAGTGCA
CGCCGTAGACTTCGAAGGCAAGATGTCCGGCATTGATGTGAAACTGATCC
GCTCGCTTGCGGCGTGGGCAACTGTACCGGTTACCTATGCCGGTGGAGTT
CGAACATTGATCGATTTGGAACTGGCCAAATCAGAAGGCCGAAGTCTTGT
GGATGTCACAATTGGGTCTGCGCTAGACATCTTCGGTGGTCAAGTGAAAT
ACAAGGATGCGGTGCGATGGCAGCGCGAGCAGGAGACAACATGTGTCTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:162163..163062-

>Ggra6025.t2 ID=Ggra6025.t2|Name=Ggra6025.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000045_pilon:162163..163062- (Gracilaria gracilis GNS1m male)
ATGGAAACGATGGAGCGCCAAGCTGGGTTTGTTGATTCCTTGCCAATTCA
ACGCACCGGCTCGAACCGAGTTCTATCGATGCCTGCCAGACCAGCTTCGG
TGGGCAGAGGACAAATTGCTATGAAGATTATGCGTTTTCGCCCCTGCATT
GATATCCATCAAAGTCGTGTCAAGCAAATCGTTGGAGGAACCTTGACGCA
CAAAGAAATGCCAGAAACGAACTTTGAAACAGATCTGTCGCCTGCTTACT
TCGCGTCTATGTATCGCGATGATAATTTGCCAGGAGGCCATGTCATAATG
CTTGGACCCGGAAACGAAGAAGCCGCATGTGAAGCATTACAAGCTTTCCC
AGGGGGAATGCATGTTGGTGGTGGCATCCAGCCGACTACGGCTGGTCGCT
TTTTGGATGCCGGAGCTAGTCACGTAATCGTAACCTCGTACATATTCCGT
GAAGGAACAATCGTATGGGAAAGGGTAGACGAAATGATTCGCACCGTTGG
CAAGAATCGTCTTGTCCTAGATGTCAGCTGTCGAGAACGTGATGGTGAAT
ACCTTGTGTGCACCGATAGGTGGCAGAAGTGGACAGACTTCAAACTTAAT
CCAAGAAACTTTGAAAGGCTGGGTAATTTATGCGACGAAATCTTAGTGCA
CGCCGTAGACTTCGAAGGCAAGATGTCCGGCATTGATGTGAAACTGATCC
GCTCGCTTGCGGCGTGGGCAACTGTACCGGTTACCTATGCCGGTGGAGTT
CGAACATTGATCGATTTGGAACTGGCCAAATCAGAAGGCCGAAGTCTTGT
GGATGTCACAATTGGGTCTGCGCTAGACATCTTCGGTGGTCAAGTGAAAT
ACAAGGATGCGGTGCGATGGCAGCGCGAGCAGGAGACAACATGTGTCTGA
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