Ggra6023.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6023.t1
Unique NameGgra6023.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:158839..159639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5911.EAS05881
PFAMsMethyltransf_11
Max annot lvl5878|Ciliophora
KEGG koko:K10770
Evalue2.21e-54
EggNOG OGsCOG0500@1|root,COG3145@1|root,KOG1331@2759|Eukaryota,KOG4176@2759|Eukaryota,3ZB9T@5878|Ciliophora
EC2.1.1.229
Descriptiondioxygenase activity
COG categoryQ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6023Ggra6023Gracilaria gracilis GNS1m malegenetig00000045_pilon 158839..159639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6023.t1.stop1Ggra6023.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 158839..158841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6023.t1.CDS1Ggra6023.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 158839..159639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6023.t1.exon1Ggra6023.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 158839..159639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6023.t1.start1Ggra6023.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 159637..159639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6023.t1Ggra6023.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 158839..159639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6023.t1 ID=Ggra6023.t1|Name=Ggra6023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MAPQPSCHRSAAPTSAPAPLEANAALYEKRHVNDVYDTIASHFASTRHAP
WPRVNEFINSLQQYSVIADVGCGNGKYISVVQSNASIHHVVGVDMCAPLV
HYAQQHLKAAPSTCDLAVAHGLHLPFEDNCFDAAINIAVVHHFATPERRV
HALRETVRILRPSGKALIYVWALERPNVIKSKRGNTSKMLNRRFDTQDVF
VPWHMRYKKEGATDDRILDDWNAVHQRYYHVYREGELEHELSQVPRAHIL
QSYYDHQNWCVLLEKR*
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spliced messenger RNA

>Ggra6023.t1 ID=Ggra6023.t1|Name=Ggra6023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000045_pilon:158839..159639- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCAGCCTTCCTGCCATCGCTCCGCAGCCCCAACAAGCGCTCC
TGCCCCGCTTGAGGCCAATGCCGCCCTCTACGAGAAGCGGCATGTCAATG
ATGTCTACGATACGATTGCTAGCCACTTTGCCTCTACTCGTCATGCGCCA
TGGCCCCGTGTGAACGAGTTCATCAACTCCTTGCAGCAGTACTCAGTCAT
CGCTGACGTTGGGTGCGGGAACGGAAAGTACATATCTGTAGTGCAGAGCA
ACGCCTCCATCCATCATGTGGTTGGAGTTGATATGTGTGCACCTCTCGTG
CATTATGCTCAACAACACCTCAAAGCCGCCCCGTCTACTTGCGACCTAGC
CGTCGCCCATGGTTTGCACCTTCCCTTCGAGGATAACTGCTTCGACGCAG
CAATTAACATAGCCGTTGTGCACCATTTTGCTACTCCTGAACGTCGCGTT
CACGCCTTGAGAGAGACTGTACGAATCCTGCGCCCGAGCGGAAAGGCTTT
GATCTATGTCTGGGCTCTGGAAAGACCCAATGTTATCAAGTCCAAGCGTG
GAAACACATCTAAAATGCTCAACAGACGATTTGATACACAGGACGTATTC
GTTCCGTGGCATATGAGGTACAAGAAAGAAGGCGCAACCGATGATCGTAT
TTTGGATGATTGGAACGCAGTTCATCAACGGTACTACCACGTTTATCGTG
AAGGCGAACTGGAACACGAGTTAAGTCAAGTGCCTCGCGCTCACATTTTG
CAGTCCTACTATGATCATCAGAACTGGTGCGTACTGCTCGAAAAACGATA
G
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protein sequence of Ggra6023.t1

>Ggra6023.t1 ID=Ggra6023.t1|Name=Ggra6023.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MAPQPSCHRSAAPTSAPAPLEANAALYEKRHVNDVYDTIASHFASTRHAP
WPRVNEFINSLQQYSVIADVGCGNGKYISVVQSNASIHHVVGVDMCAPLV
HYAQQHLKAAPSTCDLAVAHGLHLPFEDNCFDAAINIAVVHHFATPERRV
HALRETVRILRPSGKALIYVWALERPNVIKSKRGNTSKMLNRRFDTQDVF
VPWHMRYKKEGATDDRILDDWNAVHQRYYHVYREGELEHELSQVPRAHIL
QSYYDHQNWCVLLEKR*
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mRNA from alignment at tig00000045_pilon:158839..159639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6023.t1 ID=Ggra6023.t1|Name=Ggra6023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000045_pilon:158839..159639- (Gracilaria gracilis GNS1m male)
ATGGCGCCGCAGCCTTCCTGCCATCGCTCCGCAGCCCCAACAAGCGCTCC
TGCCCCGCTTGAGGCCAATGCCGCCCTCTACGAGAAGCGGCATGTCAATG
ATGTCTACGATACGATTGCTAGCCACTTTGCCTCTACTCGTCATGCGCCA
TGGCCCCGTGTGAACGAGTTCATCAACTCCTTGCAGCAGTACTCAGTCAT
CGCTGACGTTGGGTGCGGGAACGGAAAGTACATATCTGTAGTGCAGAGCA
ACGCCTCCATCCATCATGTGGTTGGAGTTGATATGTGTGCACCTCTCGTG
CATTATGCTCAACAACACCTCAAAGCCGCCCCGTCTACTTGCGACCTAGC
CGTCGCCCATGGTTTGCACCTTCCCTTCGAGGATAACTGCTTCGACGCAG
CAATTAACATAGCCGTTGTGCACCATTTTGCTACTCCTGAACGTCGCGTT
CACGCCTTGAGAGAGACTGTACGAATCCTGCGCCCGAGCGGAAAGGCTTT
GATCTATGTCTGGGCTCTGGAAAGACCCAATGTTATCAAGTCCAAGCGTG
GAAACACATCTAAAATGCTCAACAGACGATTTGATACACAGGACGTATTC
GTTCCGTGGCATATGAGGTACAAGAAAGAAGGCGCAACCGATGATCGTAT
TTTGGATGATTGGAACGCAGTTCATCAACGGTACTACCACGTTTATCGTG
AAGGCGAACTGGAACACGAGTTAAGTCAAGTGCCTCGCGCTCACATTTTG
CAGTCCTACTATGATCATCAGAACTGGTGCGTACTGCTCGAAAAACGATA
G
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Coding sequence (CDS) from alignment at tig00000045_pilon:158839..159639-

>Ggra6023.t1 ID=Ggra6023.t1|Name=Ggra6023.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000045_pilon:158839..159639- (Gracilaria gracilis GNS1m male)
ATGGCGCCGCAGCCTTCCTGCCATCGCTCCGCAGCCCCAACAAGCGCTCC
TGCCCCGCTTGAGGCCAATGCCGCCCTCTACGAGAAGCGGCATGTCAATG
ATGTCTACGATACGATTGCTAGCCACTTTGCCTCTACTCGTCATGCGCCA
TGGCCCCGTGTGAACGAGTTCATCAACTCCTTGCAGCAGTACTCAGTCAT
CGCTGACGTTGGGTGCGGGAACGGAAAGTACATATCTGTAGTGCAGAGCA
ACGCCTCCATCCATCATGTGGTTGGAGTTGATATGTGTGCACCTCTCGTG
CATTATGCTCAACAACACCTCAAAGCCGCCCCGTCTACTTGCGACCTAGC
CGTCGCCCATGGTTTGCACCTTCCCTTCGAGGATAACTGCTTCGACGCAG
CAATTAACATAGCCGTTGTGCACCATTTTGCTACTCCTGAACGTCGCGTT
CACGCCTTGAGAGAGACTGTACGAATCCTGCGCCCGAGCGGAAAGGCTTT
GATCTATGTCTGGGCTCTGGAAAGACCCAATGTTATCAAGTCCAAGCGTG
GAAACACATCTAAAATGCTCAACAGACGATTTGATACACAGGACGTATTC
GTTCCGTGGCATATGAGGTACAAGAAAGAAGGCGCAACCGATGATCGTAT
TTTGGATGATTGGAACGCAGTTCATCAACGGTACTACCACGTTTATCGTG
AAGGCGAACTGGAACACGAGTTAAGTCAAGTGCCTCGCGCTCACATTTTG
CAGTCCTACTATGATCATCAGAACTGGTGCGTACTGCTCGAAAAACGATA
G
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