Ggra6015.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6015.t1
Unique NameGgra6015.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000197_piloncontigtig00000197_pilon:151585..152352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1392540.P256_00852
PFAMsNPP1,Ricin_B_lectin
Max annot lvl1236|Gammaproteobacteria
Evalue9.41e-27
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1N0D0@1224|Proteobacteria,1RZPK@1236|Gammaproteobacteria
DescriptionPFAM Necrosis inducing
COG categoryEGP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6015Ggra6015Gracilaria gracilis GNS1m malegenetig00000197_pilon 151585..152352 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6015.t1.start1Ggra6015.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000197_pilon 151585..151587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6015.t1.CDS1Ggra6015.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000197_pilon 151585..152352 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6015.t1.exon1Ggra6015.t1.exon1Gracilaria gracilis GNS1m maleexontig00000197_pilon 151585..152352 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6015.t1.stop1Ggra6015.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000197_pilon 152350..152352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6015.t1Ggra6015.t1Gracilaria gracilis GNS1m malepolypeptidetig00000197_pilon 151585..152352 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6015.t1 ID=Ggra6015.t1|Name=Ggra6015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=256bp
MNASVLLVIFFSALGTAYSRDINYVPHTDIPPIRSKLGGVYDAYKWYQPS
LSVVDACVPFPAVGDHIASRGLKLGGARNGRCSSNTGQVYARHMNFDSRK
VRGIMYAYYFPKDQTAAGCSTSGFCGHRHDWEEAVIWVTWDWKRPLGASY
SRHGNYGASNRDWDGSHYKIQYISGSSRFNAPGKEFQTGHAFSHGSFGHP
IANWYQLSAGVRHTLNEAVWLDQNGNQKATPKINDHNFATKMNEAFREFD
KRNLF*
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spliced messenger RNA

>Ggra6015.t1 ID=Ggra6015.t1|Name=Ggra6015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000197_pilon:151585..152352+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCTCTGTTCTACTCGTCATCTTCTTCTCTGCTTTGGGCACAGC
CTACTCCAGAGATATAAACTATGTTCCCCATACGGATATTCCACCCATAC
GCTCCAAGCTCGGCGGCGTCTACGACGCATACAAGTGGTATCAGCCCTCC
TTGTCGGTTGTTGACGCTTGTGTTCCTTTCCCAGCCGTTGGCGATCATAT
TGCTAGCCGTGGTCTCAAGCTAGGTGGAGCACGAAACGGAAGATGCAGCA
GCAACACTGGTCAAGTATATGCCCGCCACATGAATTTCGACAGCCGCAAA
GTGCGAGGCATCATGTACGCCTATTACTTTCCGAAAGATCAAACGGCAGC
AGGTTGCAGTACCTCAGGCTTTTGCGGTCACAGACACGATTGGGAAGAAG
CTGTCATTTGGGTGACATGGGACTGGAAACGACCGCTTGGTGCATCGTAT
TCTCGCCATGGAAACTATGGCGCCTCCAACAGGGATTGGGACGGTTCACA
TTACAAAATCCAATACATCAGCGGCTCGAGCCGCTTCAATGCTCCAGGAA
AAGAATTTCAGACCGGACATGCTTTCTCTCATGGCTCATTCGGTCATCCA
ATTGCCAACTGGTACCAACTGAGTGCGGGTGTTCGACACACTCTAAACGA
GGCTGTTTGGCTGGACCAGAACGGGAACCAGAAGGCTACGCCTAAGATTA
ATGACCACAACTTCGCAACGAAGATGAACGAAGCGTTCAGGGAGTTTGAT
AAACGCAACCTATTTTGA
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protein sequence of Ggra6015.t1

>Ggra6015.t1 ID=Ggra6015.t1|Name=Ggra6015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=256bp
MNASVLLVIFFSALGTAYSRDINYVPHTDIPPIRSKLGGVYDAYKWYQPS
LSVVDACVPFPAVGDHIASRGLKLGGARNGRCSSNTGQVYARHMNFDSRK
VRGIMYAYYFPKDQTAAGCSTSGFCGHRHDWEEAVIWVTWDWKRPLGASY
SRHGNYGASNRDWDGSHYKIQYISGSSRFNAPGKEFQTGHAFSHGSFGHP
IANWYQLSAGVRHTLNEAVWLDQNGNQKATPKINDHNFATKMNEAFREFD
KRNLF*
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mRNA from alignment at tig00000197_pilon:151585..152352+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6015.t1 ID=Ggra6015.t1|Name=Ggra6015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000197_pilon:151585..152352+ (Gracilaria gracilis GNS1m male)
ATGAACGCCTCTGTTCTACTCGTCATCTTCTTCTCTGCTTTGGGCACAGC
CTACTCCAGAGATATAAACTATGTTCCCCATACGGATATTCCACCCATAC
GCTCCAAGCTCGGCGGCGTCTACGACGCATACAAGTGGTATCAGCCCTCC
TTGTCGGTTGTTGACGCTTGTGTTCCTTTCCCAGCCGTTGGCGATCATAT
TGCTAGCCGTGGTCTCAAGCTAGGTGGAGCACGAAACGGAAGATGCAGCA
GCAACACTGGTCAAGTATATGCCCGCCACATGAATTTCGACAGCCGCAAA
GTGCGAGGCATCATGTACGCCTATTACTTTCCGAAAGATCAAACGGCAGC
AGGTTGCAGTACCTCAGGCTTTTGCGGTCACAGACACGATTGGGAAGAAG
CTGTCATTTGGGTGACATGGGACTGGAAACGACCGCTTGGTGCATCGTAT
TCTCGCCATGGAAACTATGGCGCCTCCAACAGGGATTGGGACGGTTCACA
TTACAAAATCCAATACATCAGCGGCTCGAGCCGCTTCAATGCTCCAGGAA
AAGAATTTCAGACCGGACATGCTTTCTCTCATGGCTCATTCGGTCATCCA
ATTGCCAACTGGTACCAACTGAGTGCGGGTGTTCGACACACTCTAAACGA
GGCTGTTTGGCTGGACCAGAACGGGAACCAGAAGGCTACGCCTAAGATTA
ATGACCACAACTTCGCAACGAAGATGAACGAAGCGTTCAGGGAGTTTGAT
AAACGCAACCTATTTTGA
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Coding sequence (CDS) from alignment at tig00000197_pilon:151585..152352+

>Ggra6015.t1 ID=Ggra6015.t1|Name=Ggra6015.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00000197_pilon:151585..152352+ (Gracilaria gracilis GNS1m male)
ATGAACGCCTCTGTTCTACTCGTCATCTTCTTCTCTGCTTTGGGCACAGC
CTACTCCAGAGATATAAACTATGTTCCCCATACGGATATTCCACCCATAC
GCTCCAAGCTCGGCGGCGTCTACGACGCATACAAGTGGTATCAGCCCTCC
TTGTCGGTTGTTGACGCTTGTGTTCCTTTCCCAGCCGTTGGCGATCATAT
TGCTAGCCGTGGTCTCAAGCTAGGTGGAGCACGAAACGGAAGATGCAGCA
GCAACACTGGTCAAGTATATGCCCGCCACATGAATTTCGACAGCCGCAAA
GTGCGAGGCATCATGTACGCCTATTACTTTCCGAAAGATCAAACGGCAGC
AGGTTGCAGTACCTCAGGCTTTTGCGGTCACAGACACGATTGGGAAGAAG
CTGTCATTTGGGTGACATGGGACTGGAAACGACCGCTTGGTGCATCGTAT
TCTCGCCATGGAAACTATGGCGCCTCCAACAGGGATTGGGACGGTTCACA
TTACAAAATCCAATACATCAGCGGCTCGAGCCGCTTCAATGCTCCAGGAA
AAGAATTTCAGACCGGACATGCTTTCTCTCATGGCTCATTCGGTCATCCA
ATTGCCAACTGGTACCAACTGAGTGCGGGTGTTCGACACACTCTAAACGA
GGCTGTTTGGCTGGACCAGAACGGGAACCAGAAGGCTACGCCTAAGATTA
ATGACCACAACTTCGCAACGAAGATGAACGAAGCGTTCAGGGAGTTTGAT
AAACGCAACCTATTTTGA
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