Ggra6.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6.t1
Unique NameGgra6.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000223_piloncontigtig00000223_pilon:18955..19563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6Ggra6Gracilaria gracilis GNS1m malegenetig00000223_pilon 18955..19563 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6.t1.start1Ggra6.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000223_pilon 18955..18957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6.t1.CDS1Ggra6.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000223_pilon 18955..19563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6.t1.exon1Ggra6.t1.exon1Gracilaria gracilis GNS1m maleexontig00000223_pilon 18955..19563 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6.t1.stop1Ggra6.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000223_pilon 19561..19563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6.t1Ggra6.t1Gracilaria gracilis GNS1m malepolypeptidetig00000223_pilon 18955..19563 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6.t1 ID=Ggra6.t1|Name=Ggra6.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
MVASMNTLALFSVLLACMSFIDSAESKLFPTVFGAGRPSYKAAIKSHSVE
RLAEQYCEDIIKTSECGVCAQCDMSKETCTQLFKTDTCWPTPQEPNCNTC
FEEYGDTIFPARLFKEASSYTGFSRFGRVSQRKALFSHIVDPQLCVLFKQ
EGICKECSKCMGTGTGFSDCKSLFQTEKCWPVPTEESCYKCFEEFGAGVF
PQ*
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spliced messenger RNA

>Ggra6.t1 ID=Ggra6.t1|Name=Ggra6.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000223_pilon:18955..19563+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCTTCCATGAACACTTTGGCGCTGTTTTCTGTGCTGCTGGCTTG
CATGTCGTTCATCGACTCGGCTGAATCCAAGTTGTTCCCGACAGTGTTTG
GAGCCGGTCGACCGTCCTACAAAGCAGCTATCAAGTCTCATTCTGTTGAG
AGGCTTGCGGAGCAGTACTGTGAAGATATAATAAAGACTTCGGAGTGTGG
GGTTTGTGCGCAATGTGATATGAGCAAGGAGACCTGCACACAACTTTTCA
AGACGGATACATGCTGGCCGACACCACAGGAACCAAACTGCAATACGTGC
TTTGAGGAATACGGAGACACAATCTTCCCGGCGAGACTGTTCAAGGAGGC
GAGTTCTTATACGGGTTTCAGCCGTTTTGGCCGTGTGTCGCAAAGAAAGG
CTCTCTTTTCTCATATCGTGGATCCTCAGTTGTGTGTATTGTTCAAGCAA
GAAGGGATATGCAAGGAATGCAGCAAGTGCATGGGAACGGGTACGGGCTT
CTCGGATTGCAAGAGCTTGTTCCAAACTGAAAAATGCTGGCCTGTTCCGA
CGGAGGAATCATGTTACAAGTGCTTTGAAGAATTTGGTGCCGGTGTTTTC
CCGCAGTAG
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protein sequence of Ggra6.t1

>Ggra6.t1 ID=Ggra6.t1|Name=Ggra6.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MVASMNTLALFSVLLACMSFIDSAESKLFPTVFGAGRPSYKAAIKSHSVE
RLAEQYCEDIIKTSECGVCAQCDMSKETCTQLFKTDTCWPTPQEPNCNTC
FEEYGDTIFPARLFKEASSYTGFSRFGRVSQRKALFSHIVDPQLCVLFKQ
EGICKECSKCMGTGTGFSDCKSLFQTEKCWPVPTEESCYKCFEEFGAGVF
PQ*
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mRNA from alignment at tig00000223_pilon:18955..19563+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6.t1 ID=Ggra6.t1|Name=Ggra6.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000223_pilon:18955..19563+ (Gracilaria gracilis GNS1m male)
ATGGTCGCTTCCATGAACACTTTGGCGCTGTTTTCTGTGCTGCTGGCTTG
CATGTCGTTCATCGACTCGGCTGAATCCAAGTTGTTCCCGACAGTGTTTG
GAGCCGGTCGACCGTCCTACAAAGCAGCTATCAAGTCTCATTCTGTTGAG
AGGCTTGCGGAGCAGTACTGTGAAGATATAATAAAGACTTCGGAGTGTGG
GGTTTGTGCGCAATGTGATATGAGCAAGGAGACCTGCACACAACTTTTCA
AGACGGATACATGCTGGCCGACACCACAGGAACCAAACTGCAATACGTGC
TTTGAGGAATACGGAGACACAATCTTCCCGGCGAGACTGTTCAAGGAGGC
GAGTTCTTATACGGGTTTCAGCCGTTTTGGCCGTGTGTCGCAAAGAAAGG
CTCTCTTTTCTCATATCGTGGATCCTCAGTTGTGTGTATTGTTCAAGCAA
GAAGGGATATGCAAGGAATGCAGCAAGTGCATGGGAACGGGTACGGGCTT
CTCGGATTGCAAGAGCTTGTTCCAAACTGAAAAATGCTGGCCTGTTCCGA
CGGAGGAATCATGTTACAAGTGCTTTGAAGAATTTGGTGCCGGTGTTTTC
CCGCAGTAG
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Coding sequence (CDS) from alignment at tig00000223_pilon:18955..19563+

>Ggra6.t1 ID=Ggra6.t1|Name=Ggra6.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000223_pilon:18955..19563+ (Gracilaria gracilis GNS1m male)
ATGGTCGCTTCCATGAACACTTTGGCGCTGTTTTCTGTGCTGCTGGCTTG
CATGTCGTTCATCGACTCGGCTGAATCCAAGTTGTTCCCGACAGTGTTTG
GAGCCGGTCGACCGTCCTACAAAGCAGCTATCAAGTCTCATTCTGTTGAG
AGGCTTGCGGAGCAGTACTGTGAAGATATAATAAAGACTTCGGAGTGTGG
GGTTTGTGCGCAATGTGATATGAGCAAGGAGACCTGCACACAACTTTTCA
AGACGGATACATGCTGGCCGACACCACAGGAACCAAACTGCAATACGTGC
TTTGAGGAATACGGAGACACAATCTTCCCGGCGAGACTGTTCAAGGAGGC
GAGTTCTTATACGGGTTTCAGCCGTTTTGGCCGTGTGTCGCAAAGAAAGG
CTCTCTTTTCTCATATCGTGGATCCTCAGTTGTGTGTATTGTTCAAGCAA
GAAGGGATATGCAAGGAATGCAGCAAGTGCATGGGAACGGGTACGGGCTT
CTCGGATTGCAAGAGCTTGTTCCAAACTGAAAAATGCTGGCCTGTTCCGA
CGGAGGAATCATGTTACAAGTGCTTTGAAGAATTTGGTGCCGGTGTTTTC
CCGCAGTAG
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