Ggra5993.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5993.t1
Unique NameGgra5993.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000227_piloncontigtig00000227_pilon:98781..99383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5993Ggra5993Gracilaria gracilis GNS1m malegenetig00000227_pilon 98781..99383 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5993.t1.start1Ggra5993.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000227_pilon 98781..98783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5993.t1.CDS1Ggra5993.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000227_pilon 98781..99383 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5993.t1.exon1Ggra5993.t1.exon1Gracilaria gracilis GNS1m maleexontig00000227_pilon 98781..99383 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5993.t1.stop1Ggra5993.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000227_pilon 99381..99383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5993.t1Ggra5993.t1Gracilaria gracilis GNS1m malepolypeptidetig00000227_pilon 98781..99383 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5993.t1 ID=Ggra5993.t1|Name=Ggra5993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp
MPVPWAAPPSPSPPPRLDNLFGDGFDASPRNALSSFPLVPAPPIPPSLSL
GAPASPRASPPPLSHVPLHLLTEHAATRPLADHTNRPLPEHAARAAGSDS
RRRPPAAHPAPAPRAAQRAARTRRAAGARGGRRLHQPPRRARDPQPRGGA
ARAPEAKGAHEPAGERELLAQEPGVVAGGGELLAQVQDRPAATRHRLSGL
*
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spliced messenger RNA

>Ggra5993.t1 ID=Ggra5993.t1|Name=Ggra5993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000227_pilon:98781..99383+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgcccgttcCGTGGGCGGCGCCGCCGTCGCCGTCGCCGCCGCCACGTCT
GGACAACCTGTTCGGCGACGGCTTTGACGCCTCGCCGCGCAACGCGCTCA
GCTCCTTCCCGCTCGTGCCCGCGCCGCCCATCCCGCCCTCGCTCTCGCTG
GGCGCGCCCGCGTCGCCGCGCGCCTCGCCGCCGCCGCTGTCGCACGTGCC
GCTGCACCTGCTCACGGAGCACGCCGCCACGCGCCCGCTGGCCGACCACA
CCAACCGCCCGCTGCCGGAGCACGCCGCGCGCGCCGCCGGCTCGGACAGC
CGCCGCCGCCCGCCAGCTGCGCATCCAGCACCGGCGCCGCGTGCGGCGCA
ACGCGCCGCCCGCACGCGCCGTGCGGCTGGCGCCCGTGGCGGACGCCGCC
TCCATCAACCGCCGCGCCGCGCGCGTGATCCGCAACCGCGAGGTGGCGCT
GCGCGCGCGCCAGAAGCAAAAGGCGCTCATGAACCGGCTGGAGAGCGAGA
ACTTCTCGCTCAAGAGCCTGGCGTCGTCGCTGGAGGAGGAGAATTGCTCG
CTCAAGTGCAAGATCGACCAGCTGCGACGCGGCACCGCCTTTCTGGACTT
TGA
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protein sequence of Ggra5993.t1

>Ggra5993.t1 ID=Ggra5993.t1|Name=Ggra5993.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MPVPWAAPPSPSPPPRLDNLFGDGFDASPRNALSSFPLVPAPPIPPSLSL
GAPASPRASPPPLSHVPLHLLTEHAATRPLADHTNRPLPEHAARAAGSDS
RRRPPAAHPAPAPRAAQRAARTRRAAGARGGRRLHQPPRRARDPQPRGGA
ARAPEAKGAHEPAGERELLAQEPGVVAGGGELLAQVQDRPAATRHRLSGL
*
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mRNA from alignment at tig00000227_pilon:98781..99383+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5993.t1 ID=Ggra5993.t1|Name=Ggra5993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000227_pilon:98781..99383+ (Gracilaria gracilis GNS1m male)
atgcccgttcCGTGGGCGGCGCCGCCGTCGCCGTCGCCGCCGCCACGTCT
GGACAACCTGTTCGGCGACGGCTTTGACGCCTCGCCGCGCAACGCGCTCA
GCTCCTTCCCGCTCGTGCCCGCGCCGCCCATCCCGCCCTCGCTCTCGCTG
GGCGCGCCCGCGTCGCCGCGCGCCTCGCCGCCGCCGCTGTCGCACGTGCC
GCTGCACCTGCTCACGGAGCACGCCGCCACGCGCCCGCTGGCCGACCACA
CCAACCGCCCGCTGCCGGAGCACGCCGCGCGCGCCGCCGGCTCGGACAGC
CGCCGCCGCCCGCCAGCTGCGCATCCAGCACCGGCGCCGCGTGCGGCGCA
ACGCGCCGCCCGCACGCGCCGTGCGGCTGGCGCCCGTGGCGGACGCCGCC
TCCATCAACCGCCGCGCCGCGCGCGTGATCCGCAACCGCGAGGTGGCGCT
GCGCGCGCGCCAGAAGCAAAAGGCGCTCATGAACCGGCTGGAGAGCGAGA
ACTTCTCGCTCAAGAGCCTGGCGTCGTCGCTGGAGGAGGAGAATTGCTCG
CTCAAGTGCAAGATCGACCAGCTGCGACGCGGCACCGCCTTTCTGGACTT
TGA
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Coding sequence (CDS) from alignment at tig00000227_pilon:98781..99383+

>Ggra5993.t1 ID=Ggra5993.t1|Name=Ggra5993.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00000227_pilon:98781..99383+ (Gracilaria gracilis GNS1m male)
atgcccgttcCGTGGGCGGCGCCGCCGTCGCCGTCGCCGCCGCCACGTCT
GGACAACCTGTTCGGCGACGGCTTTGACGCCTCGCCGCGCAACGCGCTCA
GCTCCTTCCCGCTCGTGCCCGCGCCGCCCATCCCGCCCTCGCTCTCGCTG
GGCGCGCCCGCGTCGCCGCGCGCCTCGCCGCCGCCGCTGTCGCACGTGCC
GCTGCACCTGCTCACGGAGCACGCCGCCACGCGCCCGCTGGCCGACCACA
CCAACCGCCCGCTGCCGGAGCACGCCGCGCGCGCCGCCGGCTCGGACAGC
CGCCGCCGCCCGCCAGCTGCGCATCCAGCACCGGCGCCGCGTGCGGCGCA
ACGCGCCGCCCGCACGCGCCGTGCGGCTGGCGCCCGTGGCGGACGCCGCC
TCCATCAACCGCCGCGCCGCGCGCGTGATCCGCAACCGCGAGGTGGCGCT
GCGCGCGCGCCAGAAGCAAAAGGCGCTCATGAACCGGCTGGAGAGCGAGA
ACTTCTCGCTCAAGAGCCTGGCGTCGTCGCTGGAGGAGGAGAATTGCTCG
CTCAAGTGCAAGATCGACCAGCTGCGACGCGGCACCGCCTTTCTGGACTT
TGA
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