Ggra5990.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5990.t1
Unique NameGgra5990.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000227_piloncontigtig00000227_pilon:92201..93551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702493.1
Preferred nameFBA2
PFAMsGlycolytic
Max annot lvl2759|Eukaryota
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004332,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009737,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010287,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0022626,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0032991,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042866,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046686,GO:0046700,GO:0046939,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097305,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904
Evalue1.57e-196
EggNOG OGsCOG3588@1|root,KOG1557@2759|Eukaryota
EC4.1.2.13
Descriptionfructose-bisphosphate aldolase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5990Ggra5990Gracilaria gracilis GNS1m malegenetig00000227_pilon 92201..93551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5990.t1Ggra5990.t1Gracilaria gracilis GNS1m malepolypeptidetig00000227_pilon 92201..93551 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5990.t1.stop1Ggra5990.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000227_pilon 92201..92203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5990.t1.CDS1Ggra5990.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000227_pilon 92201..93350 -
Ggra5990.t1.CDS2Ggra5990.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000227_pilon 93502..93551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5990.t1.exon1Ggra5990.t1.exon1Gracilaria gracilis GNS1m maleexontig00000227_pilon 92201..93350 -
Ggra5990.t1.exon2Ggra5990.t1.exon2Gracilaria gracilis GNS1m maleexontig00000227_pilon 93502..93551 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5990.t1.intron1Ggra5990.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000227_pilon 93351..93501 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5990.t1.start1Ggra5990.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000227_pilon 93549..93551 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5990.t1 ID=Ggra5990.t1|Name=Ggra5990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=400bp
MAPAAFVNALPLSRPTNALGSTSFVAARPAYVPSRITRVQLRMALDQYAD
ELVDTASKIAAPGKGILAVDESTKTIGKRLASIGVENTEANRQAYRGLLF
NCQGLGEYISGAILFEETLYQSSAEGKPFVDCLREIGIIPGIKVDKGLSP
LGNAASFETWCTGLDGLSERAAAYYKQGARFAKWRAVLQISETTPSQLSI
QENTWGLARYARTVQDAGLVPIIEPEILMDGDHPISRTAEVQEEVLAAVY
KACDSNGVLLEGSLLKPNMVVPGSDYSGTTSPEEIGAMTVRTLERRVPSA
VPGIMFLSGGMSEEEASINLSAMNTIERKGPWSLSFSYGRALQQSCLKSW
MGKPENVPAAQQALLARARANSLANRGKYTKGSEPSLDALGTFEKGYKY*
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spliced messenger RNA

>Ggra5990.t1 ID=Ggra5990.t1|Name=Ggra5990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000227_pilon:92201..93551- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGCTGCCTTCGTCAACGCTCTTCCCCTCTCGCGCCCGACAAA
TGCGCTCGGCTCAACTTCCTTCGTAGCTGCCCGTCCGGCGTACGTCCCCA
GCCGAATTACCCGCGTGCAGCTGCGCATGGCCCTTGACCAGTATGCCGAC
GAATTGGTCGATACCGCTTCCAAGATTGCCGCTCCGGGTAAGGGAATTCT
CGCCGTAGACGAGTCCACAAAGACGATTGGAAAGCGACTGGCTTCCATTG
GCGTTGAGAACACCGAGGCAAATCGCCAGGCCTACCGCGGCCTCCTCTTC
AACTGCCAGGGCCTGGGTGAGTACATTTCTGGTGCCATCCTCTTTGAGGA
GACCTTGTACCAGAGCAGTGCCGAAGGCAAGCCATTTGTCGACTGCCTCA
GGGAGATTGGAATCATCCCCGGTATCAAGGTTGACAAGGGTCTCTCCCCT
CTTGGTAACGCTGCCTCCTTCGAGACGTGGTGCACCGGTTTGGACGGCCT
CAGTGAGCGCGCTGCCGCTTACTACAAGCAGGGTGCTCGCTTTGCCAAGT
GGCGTGCCGTGCTCCAGATCTCGGAAACCACTCCGTCGCAGTTGTCCATC
CAGGAGAACACATGGGGTCTTGCTCGCTACGCCCGCACTGTCCAGGATGC
GGGTCTTGTGCCAATCATTGAGCCCGAGATTCTGATGGACGGAGATCACC
CGATCTCCAGAACCGCCGAAGTGCAGGAAGAGGTCCTGGCCGCTGTGTAC
AAGGCTTGTGACTCCAATGGTGTTCTGCTTGAGGGTTCCCTTCTCAAGCC
GAACATGGTTGTGCCTGGATCTGACTACTCTGGAACTACCTCTCCTGAGG
AAATTGGTGCCATGACTGTGCGCACTTTGGAGCGCAGAGTGCCGTCTGCC
GTCCCTGGTATCATGTTCTTGTCTGGTGGTATGTCAGAGGAGGAAGCTTC
CATCAACCTTAGCGCCATGAACACTATTGAACGCAAGGGCCCGTGGAGCC
TCAGCTTCTCCTACGGCCGTGCGCTGCAACAATCGTGCCTCAAGTCGTGG
ATGGGCAAGCCTGAGAATGTGCCGGCCGCCCAGCAGGCCCTCCTGGCTCG
TGCTCGCGCAAACTCGCTTGCGAACCGCGGAAAGTACACCAAGGGATCTG
AGCCATCTTTGGACGCATTGGGTACTTTTGAGAAGGGTTACAAGTACTAA
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protein sequence of Ggra5990.t1

>Ggra5990.t1 ID=Ggra5990.t1|Name=Ggra5990.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=400bp
MAPAAFVNALPLSRPTNALGSTSFVAARPAYVPSRITRVQLRMALDQYAD
ELVDTASKIAAPGKGILAVDESTKTIGKRLASIGVENTEANRQAYRGLLF
NCQGLGEYISGAILFEETLYQSSAEGKPFVDCLREIGIIPGIKVDKGLSP
LGNAASFETWCTGLDGLSERAAAYYKQGARFAKWRAVLQISETTPSQLSI
QENTWGLARYARTVQDAGLVPIIEPEILMDGDHPISRTAEVQEEVLAAVY
KACDSNGVLLEGSLLKPNMVVPGSDYSGTTSPEEIGAMTVRTLERRVPSA
VPGIMFLSGGMSEEEASINLSAMNTIERKGPWSLSFSYGRALQQSCLKSW
MGKPENVPAAQQALLARARANSLANRGKYTKGSEPSLDALGTFEKGYKY*
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mRNA from alignment at tig00000227_pilon:92201..93551-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5990.t1 ID=Ggra5990.t1|Name=Ggra5990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1351bp|location=Sequence derived from alignment at tig00000227_pilon:92201..93551- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCTGCCTTCGTCAACGCTCTTCCCCTCTCGCGCCCGACAAA
GTACGTATCTCATTACCGCCTTTCCCTGTCGTTGAGCGCTTTCCCTCCCG
ACCATGCACGAAACCGGCAGCAGCCACTAACCACGTGTTGTTTGTATCTT
GTGAATCGAATCGTTGCACTGCCAACTTGATTACAATCTAATTCTGTGTA
GTGCGCTCGGCTCAACTTCCTTCGTAGCTGCCCGTCCGGCGTACGTCCCC
AGCCGAATTACCCGCGTGCAGCTGCGCATGGCCCTTGACCAGTATGCCGA
CGAATTGGTCGATACCGCTTCCAAGATTGCCGCTCCGGGTAAGGGAATTC
TCGCCGTAGACGAGTCCACAAAGACGATTGGAAAGCGACTGGCTTCCATT
GGCGTTGAGAACACCGAGGCAAATCGCCAGGCCTACCGCGGCCTCCTCTT
CAACTGCCAGGGCCTGGGTGAGTACATTTCTGGTGCCATCCTCTTTGAGG
AGACCTTGTACCAGAGCAGTGCCGAAGGCAAGCCATTTGTCGACTGCCTC
AGGGAGATTGGAATCATCCCCGGTATCAAGGTTGACAAGGGTCTCTCCCC
TCTTGGTAACGCTGCCTCCTTCGAGACGTGGTGCACCGGTTTGGACGGCC
TCAGTGAGCGCGCTGCCGCTTACTACAAGCAGGGTGCTCGCTTTGCCAAG
TGGCGTGCCGTGCTCCAGATCTCGGAAACCACTCCGTCGCAGTTGTCCAT
CCAGGAGAACACATGGGGTCTTGCTCGCTACGCCCGCACTGTCCAGGATG
CGGGTCTTGTGCCAATCATTGAGCCCGAGATTCTGATGGACGGAGATCAC
CCGATCTCCAGAACCGCCGAAGTGCAGGAAGAGGTCCTGGCCGCTGTGTA
CAAGGCTTGTGACTCCAATGGTGTTCTGCTTGAGGGTTCCCTTCTCAAGC
CGAACATGGTTGTGCCTGGATCTGACTACTCTGGAACTACCTCTCCTGAG
GAAATTGGTGCCATGACTGTGCGCACTTTGGAGCGCAGAGTGCCGTCTGC
CGTCCCTGGTATCATGTTCTTGTCTGGTGGTATGTCAGAGGAGGAAGCTT
CCATCAACCTTAGCGCCATGAACACTATTGAACGCAAGGGCCCGTGGAGC
CTCAGCTTCTCCTACGGCCGTGCGCTGCAACAATCGTGCCTCAAGTCGTG
GATGGGCAAGCCTGAGAATGTGCCGGCCGCCCAGCAGGCCCTCCTGGCTC
GTGCTCGCGCAAACTCGCTTGCGAACCGCGGAAAGTACACCAAGGGATCT
GAGCCATCTTTGGACGCATTGGGTACTTTTGAGAAGGGTTACAAGTACTA
A
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Coding sequence (CDS) from alignment at tig00000227_pilon:92201..93551-

>Ggra5990.t1 ID=Ggra5990.t1|Name=Ggra5990.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000227_pilon:92201..93551- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCTGCCTTCGTCAACGCTCTTCCCCTCTCGCGCCCGACAAA
TGCGCTCGGCTCAACTTCCTTCGTAGCTGCCCGTCCGGCGTACGTCCCCA
GCCGAATTACCCGCGTGCAGCTGCGCATGGCCCTTGACCAGTATGCCGAC
GAATTGGTCGATACCGCTTCCAAGATTGCCGCTCCGGGTAAGGGAATTCT
CGCCGTAGACGAGTCCACAAAGACGATTGGAAAGCGACTGGCTTCCATTG
GCGTTGAGAACACCGAGGCAAATCGCCAGGCCTACCGCGGCCTCCTCTTC
AACTGCCAGGGCCTGGGTGAGTACATTTCTGGTGCCATCCTCTTTGAGGA
GACCTTGTACCAGAGCAGTGCCGAAGGCAAGCCATTTGTCGACTGCCTCA
GGGAGATTGGAATCATCCCCGGTATCAAGGTTGACAAGGGTCTCTCCCCT
CTTGGTAACGCTGCCTCCTTCGAGACGTGGTGCACCGGTTTGGACGGCCT
CAGTGAGCGCGCTGCCGCTTACTACAAGCAGGGTGCTCGCTTTGCCAAGT
GGCGTGCCGTGCTCCAGATCTCGGAAACCACTCCGTCGCAGTTGTCCATC
CAGGAGAACACATGGGGTCTTGCTCGCTACGCCCGCACTGTCCAGGATGC
GGGTCTTGTGCCAATCATTGAGCCCGAGATTCTGATGGACGGAGATCACC
CGATCTCCAGAACCGCCGAAGTGCAGGAAGAGGTCCTGGCCGCTGTGTAC
AAGGCTTGTGACTCCAATGGTGTTCTGCTTGAGGGTTCCCTTCTCAAGCC
GAACATGGTTGTGCCTGGATCTGACTACTCTGGAACTACCTCTCCTGAGG
AAATTGGTGCCATGACTGTGCGCACTTTGGAGCGCAGAGTGCCGTCTGCC
GTCCCTGGTATCATGTTCTTGTCTGGTGGTATGTCAGAGGAGGAAGCTTC
CATCAACCTTAGCGCCATGAACACTATTGAACGCAAGGGCCCGTGGAGCC
TCAGCTTCTCCTACGGCCGTGCGCTGCAACAATCGTGCCTCAAGTCGTGG
ATGGGCAAGCCTGAGAATGTGCCGGCCGCCCAGCAGGCCCTCCTGGCTCG
TGCTCGCGCAAACTCGCTTGCGAACCGCGGAAAGTACACCAAGGGATCTG
AGCCATCTTTGGACGCATTGGGTACTTTTGAGAAGGGTTACAAGTACTAA
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