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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 5217.XP_007005043.1 |
| PFAMs | Vps54,Vps54_N |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K17600 |
| GOs | GO:0000003,GO:0000149,GO:0000938,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0007034,GO:0007049,GO:0008104,GO:0008150,GO:0009272,GO:0009653,GO:0009987,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031410,GO:0031505,GO:0031982,GO:0032502,GO:0032505,GO:0032989,GO:0032991,GO:0033036,GO:0034293,GO:0034613,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0065007,GO:0065008,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0099023,GO:1903046 |
| Evalue | 1.82e-20 |
| EggNOG OGs | KOG2115@1|root,KOG2115@2759|Eukaryota,38B61@33154|Opisthokonta,3NXI4@4751|Fungi,3UZQX@5204|Basidiomycota,3VE80@5234|Tremellales |
| Description | Retrograde transport, endosome to Golgi-related protein |
| COG category | U |
| BRITE | ko00000,ko01009,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra599.t1.start1 | Ggra599.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000203_pilon 58525..58527 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra599.t1 ID=Ggra599.t1|Name=Ggra599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=835bp MAADETFPWHVANPSKQSITELLHDPRASKLELPDVSSFYLSSKSLSLNS SPPTNLPAPCDINHFESYMRKYAPLHAEFQRENKRAPPEPQQLHSVPPQF FDADFAPASSQHLLILQEHHHALSQHPQLPQLRNQLTTYQTTLEYHLKKQ LDNQSAQISQSISNIRALRQNILRTAALLRETRQKASTLIPTVTSPILAV QRLTQIQANLNALKEALNRVHTVANAPSDVAILLDSGEYSAAIDTVANAK AALSHRHLSSFKALSPVRARLAQSVEQIDNALRQQFRLALMDNNELTLNH IVSLVNRMGRLPLLSRYFMREIKDGLGRELAGVDSLNAAAKYAKASASRA MLLVNIIHCGHEANDLSPKGIRKDPPDAWKAQVREAHADLDELVANVVDR MLSNWSVRDTLQERAFIVITPEKELTAENCFDEFKAALRFGEEVRCLEQL AEDLENTFFIEKRRSSLRAKISEKQIAFLGAFHKAHVDTLTRSIQSDRWQ EVRITEATSRLLTAVVGPPTTVDTEKTSASTTTKAGSSENPQGTIVIGDE AFKTVASGVRYARSICAYSLLTEKSPTLGSEFGRRGNDYCRLFNSLVGKA ILGAAALHWSALRSITPRHLSLASRTIALAAALASHVNRLPTVPLVLEET LTGAQGKIILPLVKKSEKDLRDHHAQLLAKILAIMMDRLDVHEKTMKSLP WGKQQEMERFEIPSMYAVALAENASVLHRMLWSVLPKREVFDIFQRVCAA YGTRLTEAYGALDGGEEWVRVRVANDVSCLHSRLRPLDVFRANPASLKPL SGLYNRFAKDFFETGTKAASSAKPKENRKSGTLL* back to topspliced messenger RNA >Ggra599.t1 ID=Ggra599.t1|Name=Ggra599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000203_pilon:58525..61029+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTGCAGACGAGACCTTTCCCTGGCACGTGGCCAACCCCTCAAAGCA GTCTATCACAGAGCTTCTTCACGATCCGCGAGCATCCAAACTCGAGCTAC CGGATGTGTCCTCGTTTTATCTTTCTTCCAAATCTCTGTCCCTTAATTCG TCTCCACCGACTAATTTACCCGCTCCATGCGATATAAATCACTTCGAATC GTATATGAGGAAGTATGCTCCGTTACATGCCGAGTTTCAACGAGAGAATA AAAGAGCACCACCCGAACCACAACAACTTCATTCAGTACCACCCCAGTTT TTCGACGCTGATTTTGCACCGGCCTCCAGTCAACATCTGCTTATACTCCA AGAACATCATCATGCACTCTCACAACATCCACAACTCCCACAACTTCGTA ACCAACTTACCACCTATCAAACAACTTTAGAATATCACCTTAAGAAGCAA CTTGACAACCAATCCGCCCAAATCTCACAATCAATATCTAACATTCGCGC TTTGCGGCAGAACATATTACGAACGGCCGCTTTACTTCGTGAAACACGAC AAAAAGCCTCCACGTTGATACCCACTGTTACGTCTCCCATTCTTGCTGTA CAGCGTCTTACTCAGATTCAAGCCAATCTCAACGCATTGAAAGAGGCTCT AAACCGCGTACATACCGTTGCCAATGCCCCTTCAGATGTTGCAATTCTTC TGGATAGTGGTGAATATTCTGCAGCGATCGATACCGTAGCAAATGCAAAG GCTGCACTTTCCCATCGACATTTATCCTCTTTCAAGGCTCTAAGTCCTGT TCGTGCTCGTCTTGCACAATCGGTCGAACAGATAGATAATGCTCTGAGGC AACAATTTCGACTTGCGTTAATGGATAACAACGAACTCACGCTCAACCAT ATTGTTTCGCTTGTCAATCGAATGGGACGTTTACCGCTGCTCAGTAGGTA TTTCATGCGTGAAATCAAAGATGGCTTGGGGAGAGAACTAGCAGGCGTTG ATTCTTTGAACGCTGCGGCCAAATATGCGAAGGCCAGCGCGTCTCGTGCT ATGCTTTTAGTTAATATTATCCACTGCGGACATGAAGCGAACGATTTATC TCCAAAAGGCATTCGTAAAGACCCACCGGATGCATGGAAAGCTCAAGTGC GAGAAGCACACGCTGACTTGGATGAACTTGTGGCGAATGTGGTAGATCGT ATGTTGAGTAACTGGTCTGTACGGGATACACTTCAAGAACGAGCATTCAT TGTTATCACTCCCGAAAAGGAGCTCACGGCGGAGAATTGCTTTGATGAGT TCAAAGCTGCGCTACGATTTGGAGAAGAAGTACGGTGTTTGGAACAACTT GCCGAAGACCTTGAGAACACATTTTTCATCGAAAAGAGGCGCAGCTCATT ACGAGCGAAGATATCTGAGAAACAGATTGCATTCCTTGGGGCCTTTCATA AAGCGCATGTTGACACGCTCACAAGATCAATACAATCAGATCGATGGCAA GAGGTTCGAATCACAGAAGCAACTTCGCGCTTGTTGACAGCCGTTGTCGG CCCTCCCACCACAGTGGATACGGAGAAAACAAGTGCTTCAACGACTACGA AAGCTGGAAGTTCAGAAAATCCCCAGGGAACGATCGTTATTGGCGATGAA GCGTTTAAGACCGTCGCATCTGGTGTTAGATATGCTCGTTCTATATGCGC GTATTCGTTACTAACTGAAAAGTCACCGACTCTAGGGTCTGAGTTTGGTA GACGCGGAAACGATTATTGTCGTCTCTTTAATTCACTTGTAGGGAAGGCT ATACTTGGTGCCGCTGCGTTGCACTGGTCTGCTTTGCGATCAATCACACC GAGGCATTTATCGCTTGCTTCACGCACAATTGCCCTCGCTGCTGCATTGG CGAGTCACGTTAATCGACTACCAACGGTACCCTTGGTACTGGAAGAGACA CTTACAGGCGCTCAAGGCAAGATAATCTTACCACTTGTCAAGAAATCAGA AAAAGACCTCCGAGATCATCATGCTCAGTTATTGGCAAAGATTTTGGCGA TCATGATGGATCGTCTTGATGTTCATGAGAAGACCATGAAATCTCTACCC TGGGGCAAGCAGCAAGAGATGGAACGGTTCGAAATCCCAAGTATGTACGC TGTTGCTTTGGCAGAGAATGCCTCTGTTTTACACCGAATGCTTTGGTCTG TTTTGCCGAAAAGGGAAGTCTTTGATATCTTTCAGCGTGTCTGTGCTGCA TATGGAACGCGTCTGACTGAGGCTTACGGGGCATTAGATGGGGGCGAAGA GTGGGTAAGGGTTAGAGTTGCGAATGATGTTTCTTGTCTTCACAGCAGAC TGAGGCCATTGGATGTTTTCAGAGCAAACCCTGCTTCTCTTAAGCCTTTA TCCGGACTATACAACCGCTTCGCAAAAGACTTTTTTGAAACGGGAACGAA GGCGGCATCATCGGCCAAGCCTAAAGAAAATCGTAAGTCTGGAACTCTGC TATAG back to topprotein sequence of Ggra599.t1 >Ggra599.t1 ID=Ggra599.t1|Name=Ggra599.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=835bp
MAADETFPWHVANPSKQSITELLHDPRASKLELPDVSSFYLSSKSLSLNS SPPTNLPAPCDINHFESYMRKYAPLHAEFQRENKRAPPEPQQLHSVPPQF FDADFAPASSQHLLILQEHHHALSQHPQLPQLRNQLTTYQTTLEYHLKKQ LDNQSAQISQSISNIRALRQNILRTAALLRETRQKASTLIPTVTSPILAV QRLTQIQANLNALKEALNRVHTVANAPSDVAILLDSGEYSAAIDTVANAK AALSHRHLSSFKALSPVRARLAQSVEQIDNALRQQFRLALMDNNELTLNH IVSLVNRMGRLPLLSRYFMREIKDGLGRELAGVDSLNAAAKYAKASASRA MLLVNIIHCGHEANDLSPKGIRKDPPDAWKAQVREAHADLDELVANVVDR MLSNWSVRDTLQERAFIVITPEKELTAENCFDEFKAALRFGEEVRCLEQL AEDLENTFFIEKRRSSLRAKISEKQIAFLGAFHKAHVDTLTRSIQSDRWQ EVRITEATSRLLTAVVGPPTTVDTEKTSASTTTKAGSSENPQGTIVIGDE AFKTVASGVRYARSICAYSLLTEKSPTLGSEFGRRGNDYCRLFNSLVGKA ILGAAALHWSALRSITPRHLSLASRTIALAAALASHVNRLPTVPLVLEET LTGAQGKIILPLVKKSEKDLRDHHAQLLAKILAIMMDRLDVHEKTMKSLP WGKQQEMERFEIPSMYAVALAENASVLHRMLWSVLPKREVFDIFQRVCAA YGTRLTEAYGALDGGEEWVRVRVANDVSCLHSRLRPLDVFRANPASLKPL SGLYNRFAKDFFETGTKAASSAKPKENRKSGTLL* back to topmRNA from alignment at tig00000203_pilon:58525..61029+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra599.t1 ID=Ggra599.t1|Name=Ggra599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000203_pilon:58525..61029+ (Gracilaria gracilis GNS1m male) ATGGCTGCAGACGAGACCTTTCCCTGGCACGTGGCCAACCCCTCAAAGCA
GTCTATCACAGAGCTTCTTCACGATCCGCGAGCATCCAAACTCGAGCTAC
CGGATGTGTCCTCGTTTTATCTTTCTTCCAAATCTCTGTCCCTTAATTCG
TCTCCACCGACTAATTTACCCGCTCCATGCGATATAAATCACTTCGAATC
GTATATGAGGAAGTATGCTCCGTTACATGCCGAGTTTCAACGAGAGAATA
AAAGAGCACCACCCGAACCACAACAACTTCATTCAGTACCACCCCAGTTT
TTCGACGCTGATTTTGCACCGGCCTCCAGTCAACATCTGCTTATACTCCA
AGAACATCATCATGCACTCTCACAACATCCACAACTCCCACAACTTCGTA
ACCAACTTACCACCTATCAAACAACTTTAGAATATCACCTTAAGAAGCAA
CTTGACAACCAATCCGCCCAAATCTCACAATCAATATCTAACATTCGCGC
TTTGCGGCAGAACATATTACGAACGGCCGCTTTACTTCGTGAAACACGAC
AAAAAGCCTCCACGTTGATACCCACTGTTACGTCTCCCATTCTTGCTGTA
CAGCGTCTTACTCAGATTCAAGCCAATCTCAACGCATTGAAAGAGGCTCT
AAACCGCGTACATACCGTTGCCAATGCCCCTTCAGATGTTGCAATTCTTC
TGGATAGTGGTGAATATTCTGCAGCGATCGATACCGTAGCAAATGCAAAG
GCTGCACTTTCCCATCGACATTTATCCTCTTTCAAGGCTCTAAGTCCTGT
TCGTGCTCGTCTTGCACAATCGGTCGAACAGATAGATAATGCTCTGAGGC
AACAATTTCGACTTGCGTTAATGGATAACAACGAACTCACGCTCAACCAT
ATTGTTTCGCTTGTCAATCGAATGGGACGTTTACCGCTGCTCAGTAGGTA
TTTCATGCGTGAAATCAAAGATGGCTTGGGGAGAGAACTAGCAGGCGTTG
ATTCTTTGAACGCTGCGGCCAAATATGCGAAGGCCAGCGCGTCTCGTGCT
ATGCTTTTAGTTAATATTATCCACTGCGGACATGAAGCGAACGATTTATC
TCCAAAAGGCATTCGTAAAGACCCACCGGATGCATGGAAAGCTCAAGTGC
GAGAAGCACACGCTGACTTGGATGAACTTGTGGCGAATGTGGTAGATCGT
ATGTTGAGTAACTGGTCTGTACGGGATACACTTCAAGAACGAGCATTCAT
TGTTATCACTCCCGAAAAGGAGCTCACGGCGGAGAATTGCTTTGATGAGT
TCAAAGCTGCGCTACGATTTGGAGAAGAAGTACGGTGTTTGGAACAACTT
GCCGAAGACCTTGAGAACACATTTTTCATCGAAAAGAGGCGCAGCTCATT
ACGAGCGAAGATATCTGAGAAACAGATTGCATTCCTTGGGGCCTTTCATA
AAGCGCATGTTGACACGCTCACAAGATCAATACAATCAGATCGATGGCAA
GAGGTTCGAATCACAGAAGCAACTTCGCGCTTGTTGACAGCCGTTGTCGG
CCCTCCCACCACAGTGGATACGGAGAAAACAAGTGCTTCAACGACTACGA
AAGCTGGAAGTTCAGAAAATCCCCAGGGAACGATCGTTATTGGCGATGAA
GCGTTTAAGACCGTCGCATCTGGTGTTAGATATGCTCGTTCTATATGCGC
GTATTCGTTACTAACTGAAAAGTCACCGACTCTAGGGTCTGAGTTTGGTA
GACGCGGAAACGATTATTGTCGTCTCTTTAATTCACTTGTAGGGAAGGCT
ATACTTGGTGCCGCTGCGTTGCACTGGTCTGCTTTGCGATCAATCACACC
GAGGCATTTATCGCTTGCTTCACGCACAATTGCCCTCGCTGCTGCATTGG
CGAGTCACGTTAATCGACTACCAACGGTACCCTTGGTACTGGAAGAGACA
CTTACAGGCGCTCAAGGCAAGATAATCTTACCACTTGTCAAGAAATCAGA
AAAAGACCTCCGAGATCATCATGCTCAGTTATTGGCAAAGATTTTGGCGA
TCATGATGGATCGTCTTGATGTTCATGAGAAGACCATGAAATCTCTACCC
TGGGGCAAGCAGCAAGAGATGGAACGGTTCGAAATCCCAAGTATGTACGC
TGTTGCTTTGGCAGAGAATGCCTCTGTTTTACACCGAATGCTTTGGTCTG
TTTTGCCGAAAAGGGAAGTCTTTGATATCTTTCAGCGTGTCTGTGCTGCA
TATGGAACGCGTCTGACTGAGGCTTACGGGGCATTAGATGGGGGCGAAGA
GTGGGTAAGGGTTAGAGTTGCGAATGATGTTTCTTGTCTTCACAGCAGAC
TGAGGCCATTGGATGTTTTCAGAGCAAACCCTGCTTCTCTTAAGCCTTTA
TCCGGACTATACAACCGCTTCGCAAAAGACTTTTTTGAAACGGGAACGAA
GGCGGCATCATCGGCCAAGCCTAAAGAAAATCGTAAGTCTGGAACTCTGC
TATAG back to topCoding sequence (CDS) from alignment at tig00000203_pilon:58525..61029+ >Ggra599.t1 ID=Ggra599.t1|Name=Ggra599.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2505bp|location=Sequence derived from alignment at tig00000203_pilon:58525..61029+ (Gracilaria gracilis GNS1m male) ATGGCTGCAGACGAGACCTTTCCCTGGCACGTGGCCAACCCCTCAAAGCA GTCTATCACAGAGCTTCTTCACGATCCGCGAGCATCCAAACTCGAGCTAC CGGATGTGTCCTCGTTTTATCTTTCTTCCAAATCTCTGTCCCTTAATTCG TCTCCACCGACTAATTTACCCGCTCCATGCGATATAAATCACTTCGAATC GTATATGAGGAAGTATGCTCCGTTACATGCCGAGTTTCAACGAGAGAATA AAAGAGCACCACCCGAACCACAACAACTTCATTCAGTACCACCCCAGTTT TTCGACGCTGATTTTGCACCGGCCTCCAGTCAACATCTGCTTATACTCCA AGAACATCATCATGCACTCTCACAACATCCACAACTCCCACAACTTCGTA ACCAACTTACCACCTATCAAACAACTTTAGAATATCACCTTAAGAAGCAA CTTGACAACCAATCCGCCCAAATCTCACAATCAATATCTAACATTCGCGC TTTGCGGCAGAACATATTACGAACGGCCGCTTTACTTCGTGAAACACGAC AAAAAGCCTCCACGTTGATACCCACTGTTACGTCTCCCATTCTTGCTGTA CAGCGTCTTACTCAGATTCAAGCCAATCTCAACGCATTGAAAGAGGCTCT AAACCGCGTACATACCGTTGCCAATGCCCCTTCAGATGTTGCAATTCTTC TGGATAGTGGTGAATATTCTGCAGCGATCGATACCGTAGCAAATGCAAAG GCTGCACTTTCCCATCGACATTTATCCTCTTTCAAGGCTCTAAGTCCTGT TCGTGCTCGTCTTGCACAATCGGTCGAACAGATAGATAATGCTCTGAGGC AACAATTTCGACTTGCGTTAATGGATAACAACGAACTCACGCTCAACCAT ATTGTTTCGCTTGTCAATCGAATGGGACGTTTACCGCTGCTCAGTAGGTA TTTCATGCGTGAAATCAAAGATGGCTTGGGGAGAGAACTAGCAGGCGTTG ATTCTTTGAACGCTGCGGCCAAATATGCGAAGGCCAGCGCGTCTCGTGCT ATGCTTTTAGTTAATATTATCCACTGCGGACATGAAGCGAACGATTTATC TCCAAAAGGCATTCGTAAAGACCCACCGGATGCATGGAAAGCTCAAGTGC GAGAAGCACACGCTGACTTGGATGAACTTGTGGCGAATGTGGTAGATCGT ATGTTGAGTAACTGGTCTGTACGGGATACACTTCAAGAACGAGCATTCAT TGTTATCACTCCCGAAAAGGAGCTCACGGCGGAGAATTGCTTTGATGAGT TCAAAGCTGCGCTACGATTTGGAGAAGAAGTACGGTGTTTGGAACAACTT GCCGAAGACCTTGAGAACACATTTTTCATCGAAAAGAGGCGCAGCTCATT ACGAGCGAAGATATCTGAGAAACAGATTGCATTCCTTGGGGCCTTTCATA AAGCGCATGTTGACACGCTCACAAGATCAATACAATCAGATCGATGGCAA GAGGTTCGAATCACAGAAGCAACTTCGCGCTTGTTGACAGCCGTTGTCGG CCCTCCCACCACAGTGGATACGGAGAAAACAAGTGCTTCAACGACTACGA AAGCTGGAAGTTCAGAAAATCCCCAGGGAACGATCGTTATTGGCGATGAA GCGTTTAAGACCGTCGCATCTGGTGTTAGATATGCTCGTTCTATATGCGC GTATTCGTTACTAACTGAAAAGTCACCGACTCTAGGGTCTGAGTTTGGTA GACGCGGAAACGATTATTGTCGTCTCTTTAATTCACTTGTAGGGAAGGCT ATACTTGGTGCCGCTGCGTTGCACTGGTCTGCTTTGCGATCAATCACACC GAGGCATTTATCGCTTGCTTCACGCACAATTGCCCTCGCTGCTGCATTGG CGAGTCACGTTAATCGACTACCAACGGTACCCTTGGTACTGGAAGAGACA CTTACAGGCGCTCAAGGCAAGATAATCTTACCACTTGTCAAGAAATCAGA AAAAGACCTCCGAGATCATCATGCTCAGTTATTGGCAAAGATTTTGGCGA TCATGATGGATCGTCTTGATGTTCATGAGAAGACCATGAAATCTCTACCC TGGGGCAAGCAGCAAGAGATGGAACGGTTCGAAATCCCAAGTATGTACGC TGTTGCTTTGGCAGAGAATGCCTCTGTTTTACACCGAATGCTTTGGTCTG TTTTGCCGAAAAGGGAAGTCTTTGATATCTTTCAGCGTGTCTGTGCTGCA TATGGAACGCGTCTGACTGAGGCTTACGGGGCATTAGATGGGGGCGAAGA GTGGGTAAGGGTTAGAGTTGCGAATGATGTTTCTTGTCTTCACAGCAGAC TGAGGCCATTGGATGTTTTCAGAGCAAACCCTGCTTCTCTTAAGCCTTTA TCCGGACTATACAACCGCTTCGCAAAAGACTTTTTTGAAACGGGAACGAA GGCGGCATCATCGGCCAAGCCTAAAGAAAATCGTAAGTCTGGAACTCTGC TATAG back to top
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