Ggra5980.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5980.t1
Unique NameGgra5980.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length96
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000227_piloncontigtig00000227_pilon:25702..25989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5980Ggra5980Gracilaria gracilis GNS1m malegenetig00000227_pilon 25702..25989 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5980.t1.start1Ggra5980.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000227_pilon 25702..25704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5980.t1.CDS1Ggra5980.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000227_pilon 25702..25989 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5980.t1.exon1Ggra5980.t1.exon1Gracilaria gracilis GNS1m maleexontig00000227_pilon 25702..25989 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5980.t1.stop1Ggra5980.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000227_pilon 25987..25989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5980.t1Ggra5980.t1Gracilaria gracilis GNS1m malepolypeptidetig00000227_pilon 25702..25989 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5980.t1 ID=Ggra5980.t1|Name=Ggra5980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=96bp
MDKRPKTSANRVVSYQSAIISNDDAITMMMAAHHASHLPAPTYTAVAALT
SSLPVYEADGIRFKLLEQPPDQKIKRLRDEKTKPYIALHSRCFFL*
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spliced messenger RNA

>Ggra5980.t1 ID=Ggra5980.t1|Name=Ggra5980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp|location=Sequence derived from alignment at tig00000227_pilon:25702..25989+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAACGGCCAAAGACGAGCGCCAACCGTGTCGTATCGTATCAAAG
CGCAATCATCAGTAATGATGATGCTATCACCATGATGATGGCCGCTCATC
ACGCTTCCCACTTGCCGGCGCCTACGTACACTGCTGTGGCTGCCCTCACG
TCGTCGCTCCCAGTGTATGAGGCTGATGGAATCCGATTCAAGCTGCTAGA
ACAACCGCCCGACCAGAAGATCAAGCGGCTACGAGACGAGAAAACAAAAC
CGTATATTGCGTTGCACAGCCGTTGCTTCTTTCTCTGA
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protein sequence of Ggra5980.t1

>Ggra5980.t1 ID=Ggra5980.t1|Name=Ggra5980.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=96bp
MDKRPKTSANRVVSYQSAIISNDDAITMMMAAHHASHLPAPTYTAVAALT
SSLPVYEADGIRFKLLEQPPDQKIKRLRDEKTKPYIALHSRCFFL*
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mRNA from alignment at tig00000227_pilon:25702..25989+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5980.t1 ID=Ggra5980.t1|Name=Ggra5980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp|location=Sequence derived from alignment at tig00000227_pilon:25702..25989+ (Gracilaria gracilis GNS1m male)
ATGGACAAACGGCCAAAGACGAGCGCCAACCGTGTCGTATCGTATCAAAG
CGCAATCATCAGTAATGATGATGCTATCACCATGATGATGGCCGCTCATC
ACGCTTCCCACTTGCCGGCGCCTACGTACACTGCTGTGGCTGCCCTCACG
TCGTCGCTCCCAGTGTATGAGGCTGATGGAATCCGATTCAAGCTGCTAGA
ACAACCGCCCGACCAGAAGATCAAGCGGCTACGAGACGAGAAAACAAAAC
CGTATATTGCGTTGCACAGCCGTTGCTTCTTTCTCTGA
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Coding sequence (CDS) from alignment at tig00000227_pilon:25702..25989+

>Ggra5980.t1 ID=Ggra5980.t1|Name=Ggra5980.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=288bp|location=Sequence derived from alignment at tig00000227_pilon:25702..25989+ (Gracilaria gracilis GNS1m male)
ATGGACAAACGGCCAAAGACGAGCGCCAACCGTGTCGTATCGTATCAAAG
CGCAATCATCAGTAATGATGATGCTATCACCATGATGATGGCCGCTCATC
ACGCTTCCCACTTGCCGGCGCCTACGTACACTGCTGTGGCTGCCCTCACG
TCGTCGCTCCCAGTGTATGAGGCTGATGGAATCCGATTCAAGCTGCTAGA
ACAACCGCCCGACCAGAAGATCAAGCGGCTACGAGACGAGAAAACAAAAC
CGTATATTGCGTTGCACAGCCGTTGCTTCTTTCTCTGA
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