Ggra5963.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5963.t1
Unique Name	Ggra5963.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	481

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:739587..741029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	208444.JNYY01000014_gene4295
PFAMs	Cutinase,PKD
Max annot lvl	201174\|Actinobacteria
Evalue	1.31e-23
EggNOG OGs	COG2304@1\|root,COG3291@1\|root,COG2304@2\|Bacteria,COG3291@2\|Bacteria,2I5F3@201174\|Actinobacteria
Description	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5963	Ggra5963	Gracilaria gracilis GNS1m male	gene	tig00000068_pilon 739587..741029 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5963.t1.start1	Ggra5963.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000068_pilon 739587..739589 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5963.t1.CDS1	Ggra5963.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 739587..741029 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5963.t1.exon1	Ggra5963.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 739587..741029 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5963.t1.stop1	Ggra5963.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000068_pilon 741027..741029 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5963.t1	Ggra5963.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000068_pilon 739587..741029 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000068_pilon:739587..741029+
coding sequence from alignment at tig00000068_pilon:739587..741029+

mRNA sequence

>Ggra5963.t1 ID=Ggra5963.t1|Name=Ggra5963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MKSVFFSAALVLLAAVSFFEHTEACGTVTLTLADNGPGLAVNLEVKLDRA
AFADTLVDVDVSAVYTTDTSVDPFSAPGNTASLNARELVYTDQWSFMPTE
TGNVKVQIPYIRAHGEYDFCCGSIEGEIGYGTGGSVRTFESRLSPRDGED
IALVIDSTGSMQDDIDQVRRFSRDLVSSTFDSGSSVRFAIVQYNDPVDGC
GFDASVVMPFSSNEEEILEAIGRFPVRCGGDHPEHVYDGILQALNLDWRT
CSISSTITMGDAPPKDPEPGTGLTEDIIIDIANSVNVGANTDPFIPVRTL
DRSEVSLNSTSRQLVTSGDRIRVKVPGAHPLNMILIGSDASTERSFTALA
EGTGGKLFKADGSSNIVEVLTEAISASLPDPTPVPVITNTEDLVASLQCG
SPSDPEYKVIIANPNSFPVKFTWRDFRSGARGGGVVSPPSTVVSVRKRGG
LVFSLTWEQVENGRFKTQTFPFSSIPACSS*

spliced messenger RNA

>Ggra5963.t1 ID=Ggra5963.t1|Name=Ggra5963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000068_pilon:739587..741029+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGTGTCTTCTTTTCAGCTGCTCTTGTTCTCTTGGCTGCTGTTTC
ATTCTTTGAGCACACTGAAGCATGTGGCACAGTAACCCTTACTTTGGCTG
ATAACGGTCCAGGACTCGCCGTCAATCTTGAAGTTAAACTGGATAGAGCG
GCTTTCGCGGATACCCTCGTCGATGTTGATGTCAGCGCTGTCTACACCAC
AGATACTTCCGTGGATCCATTCTCCGCCCCCGGAAATACGGCTTCTCTTA
ACGCACGCGAACTGGTCTACACGGATCAATGGTCTTTCATGCCTACAGAA
ACCGGAAATGTTAAGGTCCAGATTCCGTACATTCGTGCACATGGAGAATA
TGACTTCTGTTGTGGAAGTATTGAGGGAGAGATAGGGTATGGCACTGGTG
GATCTGTTCGAACCTTCGAGTCACGGTTGAGCCCAAGAGATGGGGAAGAT
ATTGCGCTGGTAATTGACTCTACTGGCAGCATGCAAGATGACATTGATCA
GGTGCGAAGATTCTCGAGAGACTTGGTCAGTTCAACTTTCGATTCTGGCT
CTTCCGTACGATTTGCGATAGTCCAGTACAATGACCCTGTTGATGGCTGT
GGTTTTGATGCCAGCGTCGTCATGCCGTTCTCTTCGAACGAAGAAGAAAT
CCTGGAAGCTATCGGTCGTTTTCCTGTGAGGTGTGGGGGAGATCATCCTG
AGCACGTTTATGATGGAATCCTCCAAGCGCTCAACCTCGACTGGCGCACC
TGTTCCATAAGTTCTACTATTACTATGGGTGACGCACCGCCGAAAGACCC
GGAACCTGGTACAGGGCTAACTGAGGATATCATTATTGATATTGCCAACT
CTGTGAACGTGGGAGCTAATACGGACCCTTTTATACCGGTACGTACATTG
GACCGCTCTGAAGTATCTCTCAATAGCACTTCCCGCCAACTTGTTACATC
GGGCGACAGGATTAGGGTCAAAGTTCCGGGAGCTCATCCGTTGAACATGA
TTCTCATCGGTTCCGATGCTAGCACAGAGAGGTCTTTTACAGCTCTCGCG
GAAGGTACCGGTGGAAAATTGTTCAAAGCAGATGGCTCGAGTAATATCGT
CGAAGTCCTCACCGAGGCGATTTCCGCATCACTTCCAGATCCTACACCAG
TGCCCGTAATCACCAACACAGAAGATCTTGTAGCGAGTTTGCAATGCGGC
TCTCCGAGTGATCCCGAGTACAAAGTGATCATAGCAAACCCGAACTCGTT
CCCGGTCAAATTTACTTGGCGTGATTTCCGATCAGGTGCAAGGGGAGGTG
GAGTTGTTAGTCCTCCGAGTACAGTTGTCTCTGTGAGGAAGCGAGGTGGC
CTAGTGTTTTCTCTGACTTGGGAACAGGTTGAAAATGGTAGGTTCAAGAC
GCAGACATTCCCGTTTTCGTCAATTCCGGCTTGTTCTAGTTGA

protein sequence of Ggra5963.t1

>Ggra5963.t1 ID=Ggra5963.t1|Name=Ggra5963.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MKSVFFSAALVLLAAVSFFEHTEACGTVTLTLADNGPGLAVNLEVKLDRA
AFADTLVDVDVSAVYTTDTSVDPFSAPGNTASLNARELVYTDQWSFMPTE
TGNVKVQIPYIRAHGEYDFCCGSIEGEIGYGTGGSVRTFESRLSPRDGED
IALVIDSTGSMQDDIDQVRRFSRDLVSSTFDSGSSVRFAIVQYNDPVDGC
GFDASVVMPFSSNEEEILEAIGRFPVRCGGDHPEHVYDGILQALNLDWRT
CSISSTITMGDAPPKDPEPGTGLTEDIIIDIANSVNVGANTDPFIPVRTL
DRSEVSLNSTSRQLVTSGDRIRVKVPGAHPLNMILIGSDASTERSFTALA
EGTGGKLFKADGSSNIVEVLTEAISASLPDPTPVPVITNTEDLVASLQCG
SPSDPEYKVIIANPNSFPVKFTWRDFRSGARGGGVVSPPSTVVSVRKRGG
LVFSLTWEQVENGRFKTQTFPFSSIPACSS*

mRNA from alignment at tig00000068_pilon:739587..741029+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5963.t1 ID=Ggra5963.t1|Name=Ggra5963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000068_pilon:739587..741029+ (Gracilaria gracilis GNS1m male)
ATGAAGAGTGTCTTCTTTTCAGCTGCTCTTGTTCTCTTGGCTGCTGTTTC
ATTCTTTGAGCACACTGAAGCATGTGGCACAGTAACCCTTACTTTGGCTG
ATAACGGTCCAGGACTCGCCGTCAATCTTGAAGTTAAACTGGATAGAGCG
GCTTTCGCGGATACCCTCGTCGATGTTGATGTCAGCGCTGTCTACACCAC
AGATACTTCCGTGGATCCATTCTCCGCCCCCGGAAATACGGCTTCTCTTA
ACGCACGCGAACTGGTCTACACGGATCAATGGTCTTTCATGCCTACAGAA
ACCGGAAATGTTAAGGTCCAGATTCCGTACATTCGTGCACATGGAGAATA
TGACTTCTGTTGTGGAAGTATTGAGGGAGAGATAGGGTATGGCACTGGTG
GATCTGTTCGAACCTTCGAGTCACGGTTGAGCCCAAGAGATGGGGAAGAT
ATTGCGCTGGTAATTGACTCTACTGGCAGCATGCAAGATGACATTGATCA
GGTGCGAAGATTCTCGAGAGACTTGGTCAGTTCAACTTTCGATTCTGGCT
CTTCCGTACGATTTGCGATAGTCCAGTACAATGACCCTGTTGATGGCTGT
GGTTTTGATGCCAGCGTCGTCATGCCGTTCTCTTCGAACGAAGAAGAAAT
CCTGGAAGCTATCGGTCGTTTTCCTGTGAGGTGTGGGGGAGATCATCCTG
AGCACGTTTATGATGGAATCCTCCAAGCGCTCAACCTCGACTGGCGCACC
TGTTCCATAAGTTCTACTATTACTATGGGTGACGCACCGCCGAAAGACCC
GGAACCTGGTACAGGGCTAACTGAGGATATCATTATTGATATTGCCAACT
CTGTGAACGTGGGAGCTAATACGGACCCTTTTATACCGGTACGTACATTG
GACCGCTCTGAAGTATCTCTCAATAGCACTTCCCGCCAACTTGTTACATC
GGGCGACAGGATTAGGGTCAAAGTTCCGGGAGCTCATCCGTTGAACATGA
TTCTCATCGGTTCCGATGCTAGCACAGAGAGGTCTTTTACAGCTCTCGCG
GAAGGTACCGGTGGAAAATTGTTCAAAGCAGATGGCTCGAGTAATATCGT
CGAAGTCCTCACCGAGGCGATTTCCGCATCACTTCCAGATCCTACACCAG
TGCCCGTAATCACCAACACAGAAGATCTTGTAGCGAGTTTGCAATGCGGC
TCTCCGAGTGATCCCGAGTACAAAGTGATCATAGCAAACCCGAACTCGTT
CCCGGTCAAATTTACTTGGCGTGATTTCCGATCAGGTGCAAGGGGAGGTG
GAGTTGTTAGTCCTCCGAGTACAGTTGTCTCTGTGAGGAAGCGAGGTGGC
CTAGTGTTTTCTCTGACTTGGGAACAGGTTGAAAATGGTAGGTTCAAGAC
GCAGACATTCCCGTTTTCGTCAATTCCGGCTTGTTCTAGTTGA

Coding sequence (CDS) from alignment at tig00000068_pilon:739587..741029+

>Ggra5963.t1 ID=Ggra5963.t1|Name=Ggra5963.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000068_pilon:739587..741029+ (Gracilaria gracilis GNS1m male)
ATGAAGAGTGTCTTCTTTTCAGCTGCTCTTGTTCTCTTGGCTGCTGTTTC
ATTCTTTGAGCACACTGAAGCATGTGGCACAGTAACCCTTACTTTGGCTG
ATAACGGTCCAGGACTCGCCGTCAATCTTGAAGTTAAACTGGATAGAGCG
GCTTTCGCGGATACCCTCGTCGATGTTGATGTCAGCGCTGTCTACACCAC
AGATACTTCCGTGGATCCATTCTCCGCCCCCGGAAATACGGCTTCTCTTA
ACGCACGCGAACTGGTCTACACGGATCAATGGTCTTTCATGCCTACAGAA
ACCGGAAATGTTAAGGTCCAGATTCCGTACATTCGTGCACATGGAGAATA
TGACTTCTGTTGTGGAAGTATTGAGGGAGAGATAGGGTATGGCACTGGTG
GATCTGTTCGAACCTTCGAGTCACGGTTGAGCCCAAGAGATGGGGAAGAT
ATTGCGCTGGTAATTGACTCTACTGGCAGCATGCAAGATGACATTGATCA
GGTGCGAAGATTCTCGAGAGACTTGGTCAGTTCAACTTTCGATTCTGGCT
CTTCCGTACGATTTGCGATAGTCCAGTACAATGACCCTGTTGATGGCTGT
GGTTTTGATGCCAGCGTCGTCATGCCGTTCTCTTCGAACGAAGAAGAAAT
CCTGGAAGCTATCGGTCGTTTTCCTGTGAGGTGTGGGGGAGATCATCCTG
AGCACGTTTATGATGGAATCCTCCAAGCGCTCAACCTCGACTGGCGCACC
TGTTCCATAAGTTCTACTATTACTATGGGTGACGCACCGCCGAAAGACCC
GGAACCTGGTACAGGGCTAACTGAGGATATCATTATTGATATTGCCAACT
CTGTGAACGTGGGAGCTAATACGGACCCTTTTATACCGGTACGTACATTG
GACCGCTCTGAAGTATCTCTCAATAGCACTTCCCGCCAACTTGTTACATC
GGGCGACAGGATTAGGGTCAAAGTTCCGGGAGCTCATCCGTTGAACATGA
TTCTCATCGGTTCCGATGCTAGCACAGAGAGGTCTTTTACAGCTCTCGCG
GAAGGTACCGGTGGAAAATTGTTCAAAGCAGATGGCTCGAGTAATATCGT
CGAAGTCCTCACCGAGGCGATTTCCGCATCACTTCCAGATCCTACACCAG
TGCCCGTAATCACCAACACAGAAGATCTTGTAGCGAGTTTGCAATGCGGC
TCTCCGAGTGATCCCGAGTACAAAGTGATCATAGCAAACCCGAACTCGTT
CCCGGTCAAATTTACTTGGCGTGATTTCCGATCAGGTGCAAGGGGAGGTG
GAGTTGTTAGTCCTCCGAGTACAGTTGTCTCTGTGAGGAAGCGAGGTGGC
CTAGTGTTTTCTCTGACTTGGGAACAGGTTGAAAATGGTAGGTTCAAGAC
GCAGACATTCCCGTTTTCGTCAATTCCGGCTTGTTCTAGTTGA