Ggra5953.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5953.t1
Unique Name	Ggra5953.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	558

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:705291..706964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5953	Ggra5953	Gracilaria gracilis GNS1m male	gene	tig00000068_pilon 705291..706964 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5953.t1.stop1	Ggra5953.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000068_pilon 705291..705293 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5953.t1.CDS1	Ggra5953.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 705291..706964 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5953.t1.exon1	Ggra5953.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 705291..706964 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5953.t1.start1	Ggra5953.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000068_pilon 706962..706964 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5953.t1	Ggra5953.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000068_pilon 705291..706964 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000068_pilon:705291..706964-
coding sequence from alignment at tig00000068_pilon:705291..706964-

mRNA sequence

>Ggra5953.t1 ID=Ggra5953.t1|Name=Ggra5953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp
MVIALSGCVRTKSCALVLLLTATLLQCLLPHFCSAAEPPGQCRQTFEIEQ
DFQLNRRFVIAEDAPTAILLRSRADLKERIQPMTNLLSNIVKAIDLRRQN
KDLKQCNLIDVNYGWVYTSRLSSESLQIGKLDHKCYSELDDSDAVSSGLL
SRDVFDNSMHVIGDGVQALYEAVSSISQSPQTQGAANWTNSFPLRSWSIG
DDIQTCSVETFSAYRIRNRFFLRASMTNHMVEKYVEDWRRQFVNEWVRDD
YSQSLKMEHPNVEDGQRICGTTLLERWNARAWISWHGEMKDDENPAIRIS
SQRNEVKIDLAEDSIAAANIALITLPMVMNLIPFALIAEFTTLGSLLYVI
FTDVISVVPFLVKGIELVITTRSNPALVAYYVGDEELADVQVWAADCSGT
GRFRVIGWIFIVVGAFVIVLGIGLEFVAKAYMDKKREEGDGVVVGPFGSI
IFEPTGVLGPRFGQESETYSLYTTEIDTMETGSQKAEVEDGSLEAKQNFK
QSALKWIWILLQSSPLGAWAGFVRDPRTANDEQPGVGRDGFASAERFDMH
DETGNAV*

spliced messenger RNA

>Ggra5953.t1 ID=Ggra5953.t1|Name=Ggra5953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000068_pilon:705291..706964- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATCGCTCTTTCTGGCTGTGTTCGAACCAAATCATGTGCCCTTGT
TCTTCTCCTCACCGCCACCCTGCTCCAGTGTCTTCTTCCCCACTTTTGCT
CCGCCGCTGAGCCCCCAGGCCAGTGCAGACAGACGTTTGAGATCGAGCAA
GATTTTCAGCTGAACCGTCGATTTGTTATTGCCGAGGATGCCCCAACGGC
CATACTCTTGCGGTCGCGTGCGGATTTGAAGGAAAGGATCCAGCCGATGA
CCAATTTGCTGAGCAACATTGTGAAAGCAATCGACCTCCGAAGACAGAAC
AAGGATTTGAAACAATGTAATCTAATAGACGTCAACTACGGCTGGGTCTA
TACCTCTCGACTAAGCTCAGAGTCTCTGCAGATTGGAAAACTGGACCACA
AATGCTACTCTGAGCTTGATGATTCTGATGCTGTATCAAGTGGATTGCTT
TCGCGCGATGTCTTCGATAACAGCATGCATGTCATCGGCGACGGTGTCCA
AGCTCTTTACGAAGCTGTGAGTAGCATTTCCCAATCTCCACAGACACAAG
GCGCTGCCAATTGGACCAACTCGTTCCCGCTTCGGAGCTGGAGCATTGGG
GATGATATACAGACATGCAGCGTGGAAACATTCTCTGCATATCGAATAAG
AAACCGTTTCTTCCTCAGAGCGTCGATGACAAACCACATGGTGGAAAAAT
ATGTCGAAGATTGGCGAAGGCAATTTGTCAATGAATGGGTCCGGGATGAC
TATTCCCAGAGTCTGAAAATGGAGCACCCCAACGTAGAGGACGGGCAACG
TATATGTGGGACAACGCTTCTTGAACGATGGAATGCTAGAGCGTGGATAT
CTTGGCACGGCGAAATGAAAGACGATGAAAACCCTGCAATCCGCATTTCA
TCGCAACGGAATGAGGTGAAGATTGATTTGGCAGAGGACTCCATAGCGGC
TGCTAACATTGCCCTCATAACTCTACCCATGGTAATGAACTTGATACCAT
TCGCTCTTATTGCAGAGTTCACCACGCTTGGATCTCTCTTGTACGTTATC
TTTACAGATGTAATATCTGTTGTTCCGTTTCTCGTCAAGGGTATTGAACT
CGTCATCACAACTCGATCCAATCCAGCGCTGGTTGCTTACTACGTAGGGG
ATGAGGAACTAGCCGATGTTCAAGTCTGGGCTGCGGACTGCAGTGGCACA
GGTAGATTCAGGGTCATCGGATGGATATTCATCGTTGTGGGAGCATTTGT
CATTGTTTTGGGGATTGGACTGGAGTTCGTCGCTAAGGCATACATGGACA
AAAAACGTGAAGAAGGTGATGGGGTTGTCGTCGGGCCATTCGGCAGCATC
ATTTTTGAGCCCACAGGAGTTTTGGGACCTCGTTTTGGCCAGGAATCTGA
AACCTATTCTCTCTATACGACTGAGATCGACACTATGGAAACTGGAAGCC
AAAAAGCTGAAGTAGAAGACGGTTCACTGGAAGCAAAACAGAACTTTAAA
CAATCAGCATTGAAATGGATATGGATTCTTTTGCAAAGCTCACCGTTGGG
AGCGTGGGCAGGCTTTGTGCGCGATCCGAGAACCGCGAATGATGAACAAC
CCGGGGTCGGTCGGGATGGGTTTGCAAGTGCTGAGCGCTTTGACATGCAT
GATGAAACTGGAAATGCTGTCTAG

protein sequence of Ggra5953.t1

>Ggra5953.t1 ID=Ggra5953.t1|Name=Ggra5953.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=558bp
MVIALSGCVRTKSCALVLLLTATLLQCLLPHFCSAAEPPGQCRQTFEIEQ
DFQLNRRFVIAEDAPTAILLRSRADLKERIQPMTNLLSNIVKAIDLRRQN
KDLKQCNLIDVNYGWVYTSRLSSESLQIGKLDHKCYSELDDSDAVSSGLL
SRDVFDNSMHVIGDGVQALYEAVSSISQSPQTQGAANWTNSFPLRSWSIG
DDIQTCSVETFSAYRIRNRFFLRASMTNHMVEKYVEDWRRQFVNEWVRDD
YSQSLKMEHPNVEDGQRICGTTLLERWNARAWISWHGEMKDDENPAIRIS
SQRNEVKIDLAEDSIAAANIALITLPMVMNLIPFALIAEFTTLGSLLYVI
FTDVISVVPFLVKGIELVITTRSNPALVAYYVGDEELADVQVWAADCSGT
GRFRVIGWIFIVVGAFVIVLGIGLEFVAKAYMDKKREEGDGVVVGPFGSI
IFEPTGVLGPRFGQESETYSLYTTEIDTMETGSQKAEVEDGSLEAKQNFK
QSALKWIWILLQSSPLGAWAGFVRDPRTANDEQPGVGRDGFASAERFDMH
DETGNAV*

mRNA from alignment at tig00000068_pilon:705291..706964-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5953.t1 ID=Ggra5953.t1|Name=Ggra5953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000068_pilon:705291..706964- (Gracilaria gracilis GNS1m male)
ATGGTCATCGCTCTTTCTGGCTGTGTTCGAACCAAATCATGTGCCCTTGT
TCTTCTCCTCACCGCCACCCTGCTCCAGTGTCTTCTTCCCCACTTTTGCT
CCGCCGCTGAGCCCCCAGGCCAGTGCAGACAGACGTTTGAGATCGAGCAA
GATTTTCAGCTGAACCGTCGATTTGTTATTGCCGAGGATGCCCCAACGGC
CATACTCTTGCGGTCGCGTGCGGATTTGAAGGAAAGGATCCAGCCGATGA
CCAATTTGCTGAGCAACATTGTGAAAGCAATCGACCTCCGAAGACAGAAC
AAGGATTTGAAACAATGTAATCTAATAGACGTCAACTACGGCTGGGTCTA
TACCTCTCGACTAAGCTCAGAGTCTCTGCAGATTGGAAAACTGGACCACA
AATGCTACTCTGAGCTTGATGATTCTGATGCTGTATCAAGTGGATTGCTT
TCGCGCGATGTCTTCGATAACAGCATGCATGTCATCGGCGACGGTGTCCA
AGCTCTTTACGAAGCTGTGAGTAGCATTTCCCAATCTCCACAGACACAAG
GCGCTGCCAATTGGACCAACTCGTTCCCGCTTCGGAGCTGGAGCATTGGG
GATGATATACAGACATGCAGCGTGGAAACATTCTCTGCATATCGAATAAG
AAACCGTTTCTTCCTCAGAGCGTCGATGACAAACCACATGGTGGAAAAAT
ATGTCGAAGATTGGCGAAGGCAATTTGTCAATGAATGGGTCCGGGATGAC
TATTCCCAGAGTCTGAAAATGGAGCACCCCAACGTAGAGGACGGGCAACG
TATATGTGGGACAACGCTTCTTGAACGATGGAATGCTAGAGCGTGGATAT
CTTGGCACGGCGAAATGAAAGACGATGAAAACCCTGCAATCCGCATTTCA
TCGCAACGGAATGAGGTGAAGATTGATTTGGCAGAGGACTCCATAGCGGC
TGCTAACATTGCCCTCATAACTCTACCCATGGTAATGAACTTGATACCAT
TCGCTCTTATTGCAGAGTTCACCACGCTTGGATCTCTCTTGTACGTTATC
TTTACAGATGTAATATCTGTTGTTCCGTTTCTCGTCAAGGGTATTGAACT
CGTCATCACAACTCGATCCAATCCAGCGCTGGTTGCTTACTACGTAGGGG
ATGAGGAACTAGCCGATGTTCAAGTCTGGGCTGCGGACTGCAGTGGCACA
GGTAGATTCAGGGTCATCGGATGGATATTCATCGTTGTGGGAGCATTTGT
CATTGTTTTGGGGATTGGACTGGAGTTCGTCGCTAAGGCATACATGGACA
AAAAACGTGAAGAAGGTGATGGGGTTGTCGTCGGGCCATTCGGCAGCATC
ATTTTTGAGCCCACAGGAGTTTTGGGACCTCGTTTTGGCCAGGAATCTGA
AACCTATTCTCTCTATACGACTGAGATCGACACTATGGAAACTGGAAGCC
AAAAAGCTGAAGTAGAAGACGGTTCACTGGAAGCAAAACAGAACTTTAAA
CAATCAGCATTGAAATGGATATGGATTCTTTTGCAAAGCTCACCGTTGGG
AGCGTGGGCAGGCTTTGTGCGCGATCCGAGAACCGCGAATGATGAACAAC
CCGGGGTCGGTCGGGATGGGTTTGCAAGTGCTGAGCGCTTTGACATGCAT
GATGAAACTGGAAATGCTGTCTAG

Coding sequence (CDS) from alignment at tig00000068_pilon:705291..706964-

>Ggra5953.t1 ID=Ggra5953.t1|Name=Ggra5953.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1674bp|location=Sequence derived from alignment at tig00000068_pilon:705291..706964- (Gracilaria gracilis GNS1m male)
ATGGTCATCGCTCTTTCTGGCTGTGTTCGAACCAAATCATGTGCCCTTGT
TCTTCTCCTCACCGCCACCCTGCTCCAGTGTCTTCTTCCCCACTTTTGCT
CCGCCGCTGAGCCCCCAGGCCAGTGCAGACAGACGTTTGAGATCGAGCAA
GATTTTCAGCTGAACCGTCGATTTGTTATTGCCGAGGATGCCCCAACGGC
CATACTCTTGCGGTCGCGTGCGGATTTGAAGGAAAGGATCCAGCCGATGA
CCAATTTGCTGAGCAACATTGTGAAAGCAATCGACCTCCGAAGACAGAAC
AAGGATTTGAAACAATGTAATCTAATAGACGTCAACTACGGCTGGGTCTA
TACCTCTCGACTAAGCTCAGAGTCTCTGCAGATTGGAAAACTGGACCACA
AATGCTACTCTGAGCTTGATGATTCTGATGCTGTATCAAGTGGATTGCTT
TCGCGCGATGTCTTCGATAACAGCATGCATGTCATCGGCGACGGTGTCCA
AGCTCTTTACGAAGCTGTGAGTAGCATTTCCCAATCTCCACAGACACAAG
GCGCTGCCAATTGGACCAACTCGTTCCCGCTTCGGAGCTGGAGCATTGGG
GATGATATACAGACATGCAGCGTGGAAACATTCTCTGCATATCGAATAAG
AAACCGTTTCTTCCTCAGAGCGTCGATGACAAACCACATGGTGGAAAAAT
ATGTCGAAGATTGGCGAAGGCAATTTGTCAATGAATGGGTCCGGGATGAC
TATTCCCAGAGTCTGAAAATGGAGCACCCCAACGTAGAGGACGGGCAACG
TATATGTGGGACAACGCTTCTTGAACGATGGAATGCTAGAGCGTGGATAT
CTTGGCACGGCGAAATGAAAGACGATGAAAACCCTGCAATCCGCATTTCA
TCGCAACGGAATGAGGTGAAGATTGATTTGGCAGAGGACTCCATAGCGGC
TGCTAACATTGCCCTCATAACTCTACCCATGGTAATGAACTTGATACCAT
TCGCTCTTATTGCAGAGTTCACCACGCTTGGATCTCTCTTGTACGTTATC
TTTACAGATGTAATATCTGTTGTTCCGTTTCTCGTCAAGGGTATTGAACT
CGTCATCACAACTCGATCCAATCCAGCGCTGGTTGCTTACTACGTAGGGG
ATGAGGAACTAGCCGATGTTCAAGTCTGGGCTGCGGACTGCAGTGGCACA
GGTAGATTCAGGGTCATCGGATGGATATTCATCGTTGTGGGAGCATTTGT
CATTGTTTTGGGGATTGGACTGGAGTTCGTCGCTAAGGCATACATGGACA
AAAAACGTGAAGAAGGTGATGGGGTTGTCGTCGGGCCATTCGGCAGCATC
ATTTTTGAGCCCACAGGAGTTTTGGGACCTCGTTTTGGCCAGGAATCTGA
AACCTATTCTCTCTATACGACTGAGATCGACACTATGGAAACTGGAAGCC
AAAAAGCTGAAGTAGAAGACGGTTCACTGGAAGCAAAACAGAACTTTAAA
CAATCAGCATTGAAATGGATATGGATTCTTTTGCAAAGCTCACCGTTGGG
AGCGTGGGCAGGCTTTGTGCGCGATCCGAGAACCGCGAATGATGAACAAC
CCGGGGTCGGTCGGGATGGGTTTGCAAGTGCTGAGCGCTTTGACATGCAT
GATGAAACTGGAAATGCTGTCTAG