Ggra5946.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5946.t1
Unique NameGgra5946.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length535
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:686438..688042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5946Ggra5946Gracilaria gracilis GNS1m malegenetig00000068_pilon 686438..688042 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5946.t1.stop1Ggra5946.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 686438..686440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5946.t1.CDS1Ggra5946.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 686438..688042 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5946.t1.exon1Ggra5946.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 686438..688042 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5946.t1.start1Ggra5946.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 688040..688042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5946.t1Ggra5946.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 686438..688042 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5946.t1 ID=Ggra5946.t1|Name=Ggra5946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=535bp
MAARAPLLRAHALLSALPRGAAHAVALRERHGGDLVLAATLLRAARRAGA
RAPLLLAAPQAAAHLRAAYPFASARVVQVFPEQHAPLRAFAAAALAARVQ
HVLLGCAGVHAAVAAVSRFAPALHALPPDVGAVSGVEMLPDGVLSFHAPL
MRVEHAAFAAALSELVPPHYGGGGDGGDDDQHHALFMQPSLLPAALRLAE
RRRRALRALSAQSDALLRDCVLQSSHWGYVLARTAPLFHAYNAGRASRLA
ARHAVLRLCVHVSGAAAPPELDDAQLTRLCHHLFTPASCGAMRALPKGRT
AAGVVLRPATGRFAARAAAAAAASAAASSSSSSSSSAAPPAAQEQLIMLT
REPDHENAPLLSTRLRGNAACAPLLEQRAVYWDNRFVLCAAPLSGLQHAH
VPQLAPQRVFEAALQPARPQQHAQQLTECSLYVRQLRRADWQTISSVSAR
ARRFHIPYECIRALPAVFQKMPASTAVGQLVASPHLALSARPDLYFVAVR
LPRFRCLPHDLEPGFTPEHYRKWIADTAVAAAGA*
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spliced messenger RNA

>Ggra5946.t1 ID=Ggra5946.t1|Name=Ggra5946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000068_pilon:686438..688042- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTCGCGCGCCGCTGCTCCGCGCGCACGCGCTGCTATCAGCGCT
GCCGCGCGGCGCGGCGCACGCGGTGGCGCTGCGCGAGCGGCACGGCGGCG
ACCTGGTGCTGGCGGCCACGCTGCTGCGCGCCGCGCGCCGCGCCGGCGCA
CGCGCGCCGCTGCTGCTGGCCGCGCCGCAGGCAGCGGCGCATCTGCGCGC
CGCGTACCCGTTTGCGAGCGCGCGCGTGGTGCAGGTGTTTCCCGAGCAGC
ACGCGCCGCTGCGCGCCTTCGCCGCCGCCGCGCTGGCCGCGCGCGTGCAA
CACGTGCTGCTGGGATGCGCCGGCGTGCACGCCGCCGTTGCCGCCGTGTC
GCGCTTCGCGCCCGCGCTGCACGCGTTGCCGCCGGACGTGGGCGCCGTGT
CCGGCGTGGAGATGCTGCCCGACGGAGTGCTGAGCTTCCACGCGCCGCTC
ATGCGCGTGGAGCACGCCGCCTTTGCGGCGGCGCTGTCGGAGCTCGTGCC
GCCGCACTACGGCGGCGGCGGCGATGGCGGCGACGACGACCAGCACCACG
CGCTGTTCATGCAGCCGTCGCTGCTGCCGGCCGCGCTGCGGCTGGCGGAG
CGGCGGCGGCGCGCGTTGCGCGCGCTGAGCGCGCAGTCGGACGCGCTGCT
GCGCGACTGCGTGCTGCAAAGCAGCCACTGGGGCTACGTGCTGGCGCGCA
CCGCGCCGCTGTTCCACGCGTATAACGCGGGGCGTGCGTCGCGTCTCGCG
GCGCGACACGCCGTGCTGCGCCTCTGTGTGCATGTGTCGGGCGCCGCCGC
GCCGCCCGAGCTGGACGACGCGCAGCTGACGCGCCTCTGTCACCACCTGT
TCACGCCCGCGTCGTGCGGCGCCATGCGCGCGCTGCCAAAGGGACGTACC
GCCGCCGGCGTCGTGCTGCGCCCCGCCACCGGCCGCTTCGCCGCGCGCGC
CGCCGCCGCCGCCGCCGCTTCGGCCGCCGCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCGCTGCGCCGCCCGCCGCGCAGGAGCAGCTCATCATGCTTACG
CGCGAGCCCGATCACGAGAATGCGCCGCTGCTGTCCACGCGTCTGCGCGG
CAACGCCGCGTGCGCGCCGCTGCTCGAGCAGCGCGCCGTGTACTGGGACA
ATCGCTTCGTGCTGTGCGCCGCGCCGCTGTCCGGCCTGCAGCACGCGCAC
GTGCCGCAGCTGGCGCCGCAGCGCGTGTTCGAGGCCGCGTTGCAACCGGC
GCGTCCGCAGCAGCACGCGCAGCAACTCACCGAGTGTAGCCTGTATGTGC
GACAGCTGCGCCGCGCCGACTGGCAGACCATCTCCTCGGTGAGCGCGCGC
GCGCGCCGCTTTCATATCCCGTACGAATGTATCCGCGCGCTGCCGGCTGT
GTTCCAAAAGATGCCGGCGTCCACCGCCGTGGGGCAGCTCGTTGCTTCGC
CGCACCTCGCGCTTAGTGCCAGACCGGACCTGTACTTTGTGGCCGTGCGC
TTGCCGCGCTTTCGATGCCTGCCGCATGATCTTGAGCCGGGCTTCACGCC
CGAGCATTACCGCAAGTGGATCGCCGACACCGCCGTCGCTGCCGCTGGCG
CGTAG
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protein sequence of Ggra5946.t1

>Ggra5946.t1 ID=Ggra5946.t1|Name=Ggra5946.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=535bp
MAARAPLLRAHALLSALPRGAAHAVALRERHGGDLVLAATLLRAARRAGA
RAPLLLAAPQAAAHLRAAYPFASARVVQVFPEQHAPLRAFAAAALAARVQ
HVLLGCAGVHAAVAAVSRFAPALHALPPDVGAVSGVEMLPDGVLSFHAPL
MRVEHAAFAAALSELVPPHYGGGGDGGDDDQHHALFMQPSLLPAALRLAE
RRRRALRALSAQSDALLRDCVLQSSHWGYVLARTAPLFHAYNAGRASRLA
ARHAVLRLCVHVSGAAAPPELDDAQLTRLCHHLFTPASCGAMRALPKGRT
AAGVVLRPATGRFAARAAAAAAASAAASSSSSSSSSAAPPAAQEQLIMLT
REPDHENAPLLSTRLRGNAACAPLLEQRAVYWDNRFVLCAAPLSGLQHAH
VPQLAPQRVFEAALQPARPQQHAQQLTECSLYVRQLRRADWQTISSVSAR
ARRFHIPYECIRALPAVFQKMPASTAVGQLVASPHLALSARPDLYFVAVR
LPRFRCLPHDLEPGFTPEHYRKWIADTAVAAAGA*
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mRNA from alignment at tig00000068_pilon:686438..688042-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5946.t1 ID=Ggra5946.t1|Name=Ggra5946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000068_pilon:686438..688042- (Gracilaria gracilis GNS1m male)
ATGGCGGCTCGCGCGCCGCTGCTCCGCGCGCACGCGCTGCTATCAGCGCT
GCCGCGCGGCGCGGCGCACGCGGTGGCGCTGCGCGAGCGGCACGGCGGCG
ACCTGGTGCTGGCGGCCACGCTGCTGCGCGCCGCGCGCCGCGCCGGCGCA
CGCGCGCCGCTGCTGCTGGCCGCGCCGCAGGCAGCGGCGCATCTGCGCGC
CGCGTACCCGTTTGCGAGCGCGCGCGTGGTGCAGGTGTTTCCCGAGCAGC
ACGCGCCGCTGCGCGCCTTCGCCGCCGCCGCGCTGGCCGCGCGCGTGCAA
CACGTGCTGCTGGGATGCGCCGGCGTGCACGCCGCCGTTGCCGCCGTGTC
GCGCTTCGCGCCCGCGCTGCACGCGTTGCCGCCGGACGTGGGCGCCGTGT
CCGGCGTGGAGATGCTGCCCGACGGAGTGCTGAGCTTCCACGCGCCGCTC
ATGCGCGTGGAGCACGCCGCCTTTGCGGCGGCGCTGTCGGAGCTCGTGCC
GCCGCACTACGGCGGCGGCGGCGATGGCGGCGACGACGACCAGCACCACG
CGCTGTTCATGCAGCCGTCGCTGCTGCCGGCCGCGCTGCGGCTGGCGGAG
CGGCGGCGGCGCGCGTTGCGCGCGCTGAGCGCGCAGTCGGACGCGCTGCT
GCGCGACTGCGTGCTGCAAAGCAGCCACTGGGGCTACGTGCTGGCGCGCA
CCGCGCCGCTGTTCCACGCGTATAACGCGGGGCGTGCGTCGCGTCTCGCG
GCGCGACACGCCGTGCTGCGCCTCTGTGTGCATGTGTCGGGCGCCGCCGC
GCCGCCCGAGCTGGACGACGCGCAGCTGACGCGCCTCTGTCACCACCTGT
TCACGCCCGCGTCGTGCGGCGCCATGCGCGCGCTGCCAAAGGGACGTACC
GCCGCCGGCGTCGTGCTGCGCCCCGCCACCGGCCGCTTCGCCGCGCGCGC
CGCCGCCGCCGCCGCCGCTTCGGCCGCCGCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCGCTGCGCCGCCCGCCGCGCAGGAGCAGCTCATCATGCTTACG
CGCGAGCCCGATCACGAGAATGCGCCGCTGCTGTCCACGCGTCTGCGCGG
CAACGCCGCGTGCGCGCCGCTGCTCGAGCAGCGCGCCGTGTACTGGGACA
ATCGCTTCGTGCTGTGCGCCGCGCCGCTGTCCGGCCTGCAGCACGCGCAC
GTGCCGCAGCTGGCGCCGCAGCGCGTGTTCGAGGCCGCGTTGCAACCGGC
GCGTCCGCAGCAGCACGCGCAGCAACTCACCGAGTGTAGCCTGTATGTGC
GACAGCTGCGCCGCGCCGACTGGCAGACCATCTCCTCGGTGAGCGCGCGC
GCGCGCCGCTTTCATATCCCGTACGAATGTATCCGCGCGCTGCCGGCTGT
GTTCCAAAAGATGCCGGCGTCCACCGCCGTGGGGCAGCTCGTTGCTTCGC
CGCACCTCGCGCTTAGTGCCAGACCGGACCTGTACTTTGTGGCCGTGCGC
TTGCCGCGCTTTCGATGCCTGCCGCATGATCTTGAGCCGGGCTTCACGCC
CGAGCATTACCGCAAGTGGATCGCCGACACCGCCGTCGCTGCCGCTGGCG
CGTAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:686438..688042-

>Ggra5946.t1 ID=Ggra5946.t1|Name=Ggra5946.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00000068_pilon:686438..688042- (Gracilaria gracilis GNS1m male)
ATGGCGGCTCGCGCGCCGCTGCTCCGCGCGCACGCGCTGCTATCAGCGCT
GCCGCGCGGCGCGGCGCACGCGGTGGCGCTGCGCGAGCGGCACGGCGGCG
ACCTGGTGCTGGCGGCCACGCTGCTGCGCGCCGCGCGCCGCGCCGGCGCA
CGCGCGCCGCTGCTGCTGGCCGCGCCGCAGGCAGCGGCGCATCTGCGCGC
CGCGTACCCGTTTGCGAGCGCGCGCGTGGTGCAGGTGTTTCCCGAGCAGC
ACGCGCCGCTGCGCGCCTTCGCCGCCGCCGCGCTGGCCGCGCGCGTGCAA
CACGTGCTGCTGGGATGCGCCGGCGTGCACGCCGCCGTTGCCGCCGTGTC
GCGCTTCGCGCCCGCGCTGCACGCGTTGCCGCCGGACGTGGGCGCCGTGT
CCGGCGTGGAGATGCTGCCCGACGGAGTGCTGAGCTTCCACGCGCCGCTC
ATGCGCGTGGAGCACGCCGCCTTTGCGGCGGCGCTGTCGGAGCTCGTGCC
GCCGCACTACGGCGGCGGCGGCGATGGCGGCGACGACGACCAGCACCACG
CGCTGTTCATGCAGCCGTCGCTGCTGCCGGCCGCGCTGCGGCTGGCGGAG
CGGCGGCGGCGCGCGTTGCGCGCGCTGAGCGCGCAGTCGGACGCGCTGCT
GCGCGACTGCGTGCTGCAAAGCAGCCACTGGGGCTACGTGCTGGCGCGCA
CCGCGCCGCTGTTCCACGCGTATAACGCGGGGCGTGCGTCGCGTCTCGCG
GCGCGACACGCCGTGCTGCGCCTCTGTGTGCATGTGTCGGGCGCCGCCGC
GCCGCCCGAGCTGGACGACGCGCAGCTGACGCGCCTCTGTCACCACCTGT
TCACGCCCGCGTCGTGCGGCGCCATGCGCGCGCTGCCAAAGGGACGTACC
GCCGCCGGCGTCGTGCTGCGCCCCGCCACCGGCCGCTTCGCCGCGCGCGC
CGCCGCCGCCGCCGCCGCTTCGGCCGCCGCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCGCTGCGCCGCCCGCCGCGCAGGAGCAGCTCATCATGCTTACG
CGCGAGCCCGATCACGAGAATGCGCCGCTGCTGTCCACGCGTCTGCGCGG
CAACGCCGCGTGCGCGCCGCTGCTCGAGCAGCGCGCCGTGTACTGGGACA
ATCGCTTCGTGCTGTGCGCCGCGCCGCTGTCCGGCCTGCAGCACGCGCAC
GTGCCGCAGCTGGCGCCGCAGCGCGTGTTCGAGGCCGCGTTGCAACCGGC
GCGTCCGCAGCAGCACGCGCAGCAACTCACCGAGTGTAGCCTGTATGTGC
GACAGCTGCGCCGCGCCGACTGGCAGACCATCTCCTCGGTGAGCGCGCGC
GCGCGCCGCTTTCATATCCCGTACGAATGTATCCGCGCGCTGCCGGCTGT
GTTCCAAAAGATGCCGGCGTCCACCGCCGTGGGGCAGCTCGTTGCTTCGC
CGCACCTCGCGCTTAGTGCCAGACCGGACCTGTACTTTGTGGCCGTGCGC
TTGCCGCGCTTTCGATGCCTGCCGCATGATCTTGAGCCGGGCTTCACGCC
CGAGCATTACCGCAAGTGGATCGCCGACACCGCCGTCGCTGCCGCTGGCG
CGTAG
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