Ggra5942.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5942.t1
Unique NameGgra5942.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:622911..623801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5942Ggra5942Gracilaria gracilis GNS1m malegenetig00000068_pilon 622911..623801 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5942.t1.stop1Ggra5942.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 622911..622913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5942.t1.CDS1Ggra5942.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 622911..623801 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5942.t1.exon1Ggra5942.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 622911..623801 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5942.t1.start1Ggra5942.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 623799..623801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5942.t1Ggra5942.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 622911..623801 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5942.t1 ID=Ggra5942.t1|Name=Ggra5942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MPHGVGFSGSTAVVPSSRRMPGWRPRDVNDFLQSRCSGSRAIWQLEGQLI
ALNTGRVLARVVGVQETLLDKPLKKVTTLAPKSLRLSKNDTSKRSHEPLT
HSGRLVVRDTIFYTDPDGIKMTQFRFRPTSVARRVSPVLGKAGRVTIGRS
TDESMVLSRNRDESQLFTTITTPPLRMNGLLKTGWSFIGRRVKGMNGVSN
PGVVEKFELLAGRNAASWNWSGVGRCPSWYGRGQCVMFLNAKRVRPSDLD
NRVKLWMKEAGRSELRVVDADEAEREAKLEREAEEKKKKRKVFGFF*
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spliced messenger RNA

>Ggra5942.t1 ID=Ggra5942.t1|Name=Ggra5942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000068_pilon:622911..623801- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACGGCGTTGGTTTCTCTGGCAGCACAGCAGTTGTGCCCTCTTC
CCGACGCATGCCAGGCTGGCGACCGCGGGACGTAAATGACTTCCTTCAGT
CGCGTTGCAGCGGATCGAGAGCCATATGGCAGCTAGAAGGGCAGCTGATC
GCGCTCAACACTGGACGCGTTCTAGCGCGTGTCGTCGGTGTGCAGGAGAC
ATTGTTGGACAAACCATTGAAGAAAGTTACCACTTTGGCACCAAAGTCGC
TGCGATTGTCGAAAAATGATACGTCAAAACGCTCGCATGAACCTTTGACG
CATTCAGGCAGATTGGTTGTCAGGGATACTATCTTTTACACGGATCCTGA
TGGCATCAAGATGACACAGTTTCGATTCAGACCTACCAGTGTTGCTCGCC
GCGTTTCGCCTGTGCTTGGGAAGGCGGGACGTGTTACTATCGGAAGGTCA
ACTGACGAGTCCATGGTGCTGTCTAGAAATCGCGATGAGTCACAGTTGTT
CACCACCATAACTACGCCACCCTTGCGGATGAATGGGCTGTTGAAAACGG
GATGGTCTTTCATTGGGCGAAGGGTGAAGGGAATGAACGGAGTAAGTAAT
CCGGGTGTAGTTGAAAAGTTTGAATTGCTTGCAGGGCGAAATGCCGCTTC
GTGGAATTGGTCCGGCGTCGGTAGATGTCCTTCGTGGTATGGGCGTGGTC
AATGTGTCATGTTTCTTAATGCGAAGAGGGTGCGACCTAGCGATTTGGAT
AATAGGGTCAAGCTCTGGATGAAGGAGGCTGGCAGATCAGAATTGCGCGT
TGTAGACGCCGATGAGGCTGAGCGAGAAGCGAAGTTGGAGCGAGAGGCTG
AAGAGAAAAAGAAGAAGAGAAAAGTCTTCGGATTTTTCTGA
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protein sequence of Ggra5942.t1

>Ggra5942.t1 ID=Ggra5942.t1|Name=Ggra5942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MPHGVGFSGSTAVVPSSRRMPGWRPRDVNDFLQSRCSGSRAIWQLEGQLI
ALNTGRVLARVVGVQETLLDKPLKKVTTLAPKSLRLSKNDTSKRSHEPLT
HSGRLVVRDTIFYTDPDGIKMTQFRFRPTSVARRVSPVLGKAGRVTIGRS
TDESMVLSRNRDESQLFTTITTPPLRMNGLLKTGWSFIGRRVKGMNGVSN
PGVVEKFELLAGRNAASWNWSGVGRCPSWYGRGQCVMFLNAKRVRPSDLD
NRVKLWMKEAGRSELRVVDADEAEREAKLEREAEEKKKKRKVFGFF*
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mRNA from alignment at tig00000068_pilon:622911..623801-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5942.t1 ID=Ggra5942.t1|Name=Ggra5942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000068_pilon:622911..623801- (Gracilaria gracilis GNS1m male)
ATGCCGCACGGCGTTGGTTTCTCTGGCAGCACAGCAGTTGTGCCCTCTTC
CCGACGCATGCCAGGCTGGCGACCGCGGGACGTAAATGACTTCCTTCAGT
CGCGTTGCAGCGGATCGAGAGCCATATGGCAGCTAGAAGGGCAGCTGATC
GCGCTCAACACTGGACGCGTTCTAGCGCGTGTCGTCGGTGTGCAGGAGAC
ATTGTTGGACAAACCATTGAAGAAAGTTACCACTTTGGCACCAAAGTCGC
TGCGATTGTCGAAAAATGATACGTCAAAACGCTCGCATGAACCTTTGACG
CATTCAGGCAGATTGGTTGTCAGGGATACTATCTTTTACACGGATCCTGA
TGGCATCAAGATGACACAGTTTCGATTCAGACCTACCAGTGTTGCTCGCC
GCGTTTCGCCTGTGCTTGGGAAGGCGGGACGTGTTACTATCGGAAGGTCA
ACTGACGAGTCCATGGTGCTGTCTAGAAATCGCGATGAGTCACAGTTGTT
CACCACCATAACTACGCCACCCTTGCGGATGAATGGGCTGTTGAAAACGG
GATGGTCTTTCATTGGGCGAAGGGTGAAGGGAATGAACGGAGTAAGTAAT
CCGGGTGTAGTTGAAAAGTTTGAATTGCTTGCAGGGCGAAATGCCGCTTC
GTGGAATTGGTCCGGCGTCGGTAGATGTCCTTCGTGGTATGGGCGTGGTC
AATGTGTCATGTTTCTTAATGCGAAGAGGGTGCGACCTAGCGATTTGGAT
AATAGGGTCAAGCTCTGGATGAAGGAGGCTGGCAGATCAGAATTGCGCGT
TGTAGACGCCGATGAGGCTGAGCGAGAAGCGAAGTTGGAGCGAGAGGCTG
AAGAGAAAAAGAAGAAGAGAAAAGTCTTCGGATTTTTCTGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:622911..623801-

>Ggra5942.t1 ID=Ggra5942.t1|Name=Ggra5942.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000068_pilon:622911..623801- (Gracilaria gracilis GNS1m male)
ATGCCGCACGGCGTTGGTTTCTCTGGCAGCACAGCAGTTGTGCCCTCTTC
CCGACGCATGCCAGGCTGGCGACCGCGGGACGTAAATGACTTCCTTCAGT
CGCGTTGCAGCGGATCGAGAGCCATATGGCAGCTAGAAGGGCAGCTGATC
GCGCTCAACACTGGACGCGTTCTAGCGCGTGTCGTCGGTGTGCAGGAGAC
ATTGTTGGACAAACCATTGAAGAAAGTTACCACTTTGGCACCAAAGTCGC
TGCGATTGTCGAAAAATGATACGTCAAAACGCTCGCATGAACCTTTGACG
CATTCAGGCAGATTGGTTGTCAGGGATACTATCTTTTACACGGATCCTGA
TGGCATCAAGATGACACAGTTTCGATTCAGACCTACCAGTGTTGCTCGCC
GCGTTTCGCCTGTGCTTGGGAAGGCGGGACGTGTTACTATCGGAAGGTCA
ACTGACGAGTCCATGGTGCTGTCTAGAAATCGCGATGAGTCACAGTTGTT
CACCACCATAACTACGCCACCCTTGCGGATGAATGGGCTGTTGAAAACGG
GATGGTCTTTCATTGGGCGAAGGGTGAAGGGAATGAACGGAGTAAGTAAT
CCGGGTGTAGTTGAAAAGTTTGAATTGCTTGCAGGGCGAAATGCCGCTTC
GTGGAATTGGTCCGGCGTCGGTAGATGTCCTTCGTGGTATGGGCGTGGTC
AATGTGTCATGTTTCTTAATGCGAAGAGGGTGCGACCTAGCGATTTGGAT
AATAGGGTCAAGCTCTGGATGAAGGAGGCTGGCAGATCAGAATTGCGCGT
TGTAGACGCCGATGAGGCTGAGCGAGAAGCGAAGTTGGAGCGAGAGGCTG
AAGAGAAAAAGAAGAAGAGAAAAGTCTTCGGATTTTTCTGA
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