Ggra5941.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5941.t1
Unique NameGgra5941.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:621330..622839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_91169
Preferred nameMGAT1
PFAMsGNT-I
Max annot lvl2759|Eukaryota
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue2.79e-45
EggNOG OGsKOG1413@1|root,KOG1413@2759|Eukaryota
EC2.4.1.101
Descriptionalpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
COG categoryS
CAZyGT13
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5941Ggra5941Gracilaria gracilis GNS1m malegenetig00000068_pilon 621330..622839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5941.t1Ggra5941.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 621330..622839 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5941.t1.start1Ggra5941.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 621330..621332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5941.t1.CDS1Ggra5941.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 621330..621523 +
Ggra5941.t1.CDS2Ggra5941.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000068_pilon 621612..622839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5941.t1.exon1Ggra5941.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 621330..621523 +
Ggra5941.t1.exon2Ggra5941.t1.exon2Gracilaria gracilis GNS1m maleexontig00000068_pilon 621612..622839 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5941.t1.intron1Ggra5941.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000068_pilon 621524..621611 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5941.t1.stop1Ggra5941.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 622837..622839 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5941.t1 ID=Ggra5941.t1|Name=Ggra5941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MHTVFFFVILLFPTLVWSNTVIVILAYDRTSHLRQTIRSLRAATPESLSS
IPVFVSIDDNPKAKRVSRAVEFEGGVSDIWVQPAPREPLQPRARISRHYA
LVLERAFSNDSNTHVILLEDDLRFSPDFLTYLTSALSSLQSAGQNQIVCA
SGWNDNGFGPASVSEASLTSFFPGLGWGLHRSLWDVLRPKWPAYGTDIVG
IGWDFWLRVNFDRYGWTCITPLLSRVKHAGASGANVNSAQTTSMYAETRT
ANVAIGVVQWEEVLGRLNVQSEIEKTEKRLKNGKVVYSLQEAISKRYEEP
VLPYVNEEYSAIAHELVLWPTSRGHFRHTLFAQIDNKTNVLLYDKRRASR
YFEIPASHNSLLYEVDLRQGKLNESCDQTCEREGGKCTSEALEVANDCRT
MLEAFSECKGCSHETGKDLPAMVDEDAPLETAGWCLITESGMGDGGKLIC
SGRFRWTRRLCGCLLQHDSKDEL*
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spliced messenger RNA

>Ggra5941.t1 ID=Ggra5941.t1|Name=Ggra5941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000068_pilon:621330..622839+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACCGTGTTTTTCTTCGTGATACTGCTCTTCCCAACTCTTGTGTG
GAGCAATACAGTTATCGTGATTTTGGCATACGATCGTACATCCCACCTTC
GTCAGACGATCCGCTCACTGCGCGCAGCCACTCCTGAGTCACTTTCAAGC
ATTCCTGTGTTTGTTTCGATTGACGACAATCCCAAAGCAAAGAGAGTGAG
TAGGGCAGTAGAGTTCGAGGGCGGGGTGTCGGACATTTGGGTTCAACCGG
CACCGCGAGAACCTCTGCAACCGCGAGCTCGAATATCTCGTCACTATGCC
TTGGTGCTGGAGCGAGCTTTTTCTAATGACTCAAACACCCATGTGATCCT
CCTAGAAGATGATCTGCGATTCTCACCTGACTTTCTAACTTATCTGACAT
CGGCCCTATCAAGTCTTCAATCTGCGGGTCAAAACCAAATAGTTTGTGCT
TCCGGTTGGAATGACAATGGATTTGGTCCCGCGTCCGTCTCTGAGGCGTC
ACTGACCTCGTTCTTCCCAGGGCTTGGATGGGGGCTACATAGATCTCTGT
GGGACGTCCTCCGCCCAAAGTGGCCCGCATATGGAACAGATATCGTTGGG
ATTGGTTGGGACTTTTGGCTCAGAGTTAACTTTGATCGATACGGATGGAC
CTGCATCACCCCTTTGCTATCGCGAGTGAAGCATGCAGGTGCATCTGGGG
CAAACGTGAACTCTGCGCAAACCACCAGCATGTACGCGGAAACTCGCACA
GCCAATGTGGCAATCGGGGTGGTACAATGGGAAGAGGTTCTGGGACGTCT
AAATGTTCAGAGCGAAATCGAAAAAACGGAGAAGAGATTGAAGAATGGGA
AGGTTGTTTACTCGCTTCAGGAGGCTATTTCAAAAAGATACGAGGAACCC
GTGTTGCCTTATGTCAACGAAGAGTATAGTGCAATAGCTCATGAGCTGGT
GCTGTGGCCGACTTCAAGAGGTCATTTCCGGCATACGCTCTTCGCCCAAA
TCGACAACAAGACGAATGTTCTGTTGTACGACAAACGAAGAGCCTCACGA
TATTTCGAGATTCCGGCGTCCCATAATAGTCTTCTGTATGAAGTTGATCT
ACGACAAGGCAAGTTGAACGAGTCTTGTGATCAAACATGTGAGCGTGAAG
GAGGAAAATGCACTTCCGAAGCACTCGAGGTAGCCAATGACTGCAGAACC
ATGTTAGAGGCATTTTCTGAATGCAAAGGTTGTTCACACGAAACTGGTAA
GGATCTGCCAGCCATGGTTGATGAGGATGCTCCCCTGGAAACAGCCGGCT
GGTGTCTCATCACAGAAAGCGGAATGGGAGACGGTGGAAAGTTAATTTGT
TCTGGTCGATTTCGTTGGACGCGAAGACTTTGTGGATGTCTCTTGCAACA
TGACTCGAAAGATGAGTTGTAG
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protein sequence of Ggra5941.t1

>Ggra5941.t1 ID=Ggra5941.t1|Name=Ggra5941.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MHTVFFFVILLFPTLVWSNTVIVILAYDRTSHLRQTIRSLRAATPESLSS
IPVFVSIDDNPKAKRVSRAVEFEGGVSDIWVQPAPREPLQPRARISRHYA
LVLERAFSNDSNTHVILLEDDLRFSPDFLTYLTSALSSLQSAGQNQIVCA
SGWNDNGFGPASVSEASLTSFFPGLGWGLHRSLWDVLRPKWPAYGTDIVG
IGWDFWLRVNFDRYGWTCITPLLSRVKHAGASGANVNSAQTTSMYAETRT
ANVAIGVVQWEEVLGRLNVQSEIEKTEKRLKNGKVVYSLQEAISKRYEEP
VLPYVNEEYSAIAHELVLWPTSRGHFRHTLFAQIDNKTNVLLYDKRRASR
YFEIPASHNSLLYEVDLRQGKLNESCDQTCEREGGKCTSEALEVANDCRT
MLEAFSECKGCSHETGKDLPAMVDEDAPLETAGWCLITESGMGDGGKLIC
SGRFRWTRRLCGCLLQHDSKDEL*
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mRNA from alignment at tig00000068_pilon:621330..622839+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5941.t1 ID=Ggra5941.t1|Name=Ggra5941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1510bp|location=Sequence derived from alignment at tig00000068_pilon:621330..622839+ (Gracilaria gracilis GNS1m male)
ATGCACACCGTGTTTTTCTTCGTGATACTGCTCTTCCCAACTCTTGTGTG
GAGCAATACAGTTATCGTGATTTTGGCATACGATCGTACATCCCACCTTC
GTCAGACGATCCGCTCACTGCGCGCAGCCACTCCTGAGTCACTTTCAAGC
ATTCCTGTGTTTGTTTCGATTGACGACAATCCCAAAGCAAAGAGGTAGGG
AAGTGAAAATCTTGTCGGGCAAGTGTCTCACAGTTCTCTTTGTTTACATA
TCTAACATCTAGTAATACGTCATCGTTAAAAGAGTGAGTAGGGCAGTAGA
GTTCGAGGGCGGGGTGTCGGACATTTGGGTTCAACCGGCACCGCGAGAAC
CTCTGCAACCGCGAGCTCGAATATCTCGTCACTATGCCTTGGTGCTGGAG
CGAGCTTTTTCTAATGACTCAAACACCCATGTGATCCTCCTAGAAGATGA
TCTGCGATTCTCACCTGACTTTCTAACTTATCTGACATCGGCCCTATCAA
GTCTTCAATCTGCGGGTCAAAACCAAATAGTTTGTGCTTCCGGTTGGAAT
GACAATGGATTTGGTCCCGCGTCCGTCTCTGAGGCGTCACTGACCTCGTT
CTTCCCAGGGCTTGGATGGGGGCTACATAGATCTCTGTGGGACGTCCTCC
GCCCAAAGTGGCCCGCATATGGAACAGATATCGTTGGGATTGGTTGGGAC
TTTTGGCTCAGAGTTAACTTTGATCGATACGGATGGACCTGCATCACCCC
TTTGCTATCGCGAGTGAAGCATGCAGGTGCATCTGGGGCAAACGTGAACT
CTGCGCAAACCACCAGCATGTACGCGGAAACTCGCACAGCCAATGTGGCA
ATCGGGGTGGTACAATGGGAAGAGGTTCTGGGACGTCTAAATGTTCAGAG
CGAAATCGAAAAAACGGAGAAGAGATTGAAGAATGGGAAGGTTGTTTACT
CGCTTCAGGAGGCTATTTCAAAAAGATACGAGGAACCCGTGTTGCCTTAT
GTCAACGAAGAGTATAGTGCAATAGCTCATGAGCTGGTGCTGTGGCCGAC
TTCAAGAGGTCATTTCCGGCATACGCTCTTCGCCCAAATCGACAACAAGA
CGAATGTTCTGTTGTACGACAAACGAAGAGCCTCACGATATTTCGAGATT
CCGGCGTCCCATAATAGTCTTCTGTATGAAGTTGATCTACGACAAGGCAA
GTTGAACGAGTCTTGTGATCAAACATGTGAGCGTGAAGGAGGAAAATGCA
CTTCCGAAGCACTCGAGGTAGCCAATGACTGCAGAACCATGTTAGAGGCA
TTTTCTGAATGCAAAGGTTGTTCACACGAAACTGGTAAGGATCTGCCAGC
CATGGTTGATGAGGATGCTCCCCTGGAAACAGCCGGCTGGTGTCTCATCA
CAGAAAGCGGAATGGGAGACGGTGGAAAGTTAATTTGTTCTGGTCGATTT
CGTTGGACGCGAAGACTTTGTGGATGTCTCTTGCAACATGACTCGAAAGA
TGAGTTGTAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:621330..622839+

>Ggra5941.t1 ID=Ggra5941.t1|Name=Ggra5941.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000068_pilon:621330..622839+ (Gracilaria gracilis GNS1m male)
ATGCACACCGTGTTTTTCTTCGTGATACTGCTCTTCCCAACTCTTGTGTG
GAGCAATACAGTTATCGTGATTTTGGCATACGATCGTACATCCCACCTTC
GTCAGACGATCCGCTCACTGCGCGCAGCCACTCCTGAGTCACTTTCAAGC
ATTCCTGTGTTTGTTTCGATTGACGACAATCCCAAAGCAAAGAGAGTGAG
TAGGGCAGTAGAGTTCGAGGGCGGGGTGTCGGACATTTGGGTTCAACCGG
CACCGCGAGAACCTCTGCAACCGCGAGCTCGAATATCTCGTCACTATGCC
TTGGTGCTGGAGCGAGCTTTTTCTAATGACTCAAACACCCATGTGATCCT
CCTAGAAGATGATCTGCGATTCTCACCTGACTTTCTAACTTATCTGACAT
CGGCCCTATCAAGTCTTCAATCTGCGGGTCAAAACCAAATAGTTTGTGCT
TCCGGTTGGAATGACAATGGATTTGGTCCCGCGTCCGTCTCTGAGGCGTC
ACTGACCTCGTTCTTCCCAGGGCTTGGATGGGGGCTACATAGATCTCTGT
GGGACGTCCTCCGCCCAAAGTGGCCCGCATATGGAACAGATATCGTTGGG
ATTGGTTGGGACTTTTGGCTCAGAGTTAACTTTGATCGATACGGATGGAC
CTGCATCACCCCTTTGCTATCGCGAGTGAAGCATGCAGGTGCATCTGGGG
CAAACGTGAACTCTGCGCAAACCACCAGCATGTACGCGGAAACTCGCACA
GCCAATGTGGCAATCGGGGTGGTACAATGGGAAGAGGTTCTGGGACGTCT
AAATGTTCAGAGCGAAATCGAAAAAACGGAGAAGAGATTGAAGAATGGGA
AGGTTGTTTACTCGCTTCAGGAGGCTATTTCAAAAAGATACGAGGAACCC
GTGTTGCCTTATGTCAACGAAGAGTATAGTGCAATAGCTCATGAGCTGGT
GCTGTGGCCGACTTCAAGAGGTCATTTCCGGCATACGCTCTTCGCCCAAA
TCGACAACAAGACGAATGTTCTGTTGTACGACAAACGAAGAGCCTCACGA
TATTTCGAGATTCCGGCGTCCCATAATAGTCTTCTGTATGAAGTTGATCT
ACGACAAGGCAAGTTGAACGAGTCTTGTGATCAAACATGTGAGCGTGAAG
GAGGAAAATGCACTTCCGAAGCACTCGAGGTAGCCAATGACTGCAGAACC
ATGTTAGAGGCATTTTCTGAATGCAAAGGTTGTTCACACGAAACTGGTAA
GGATCTGCCAGCCATGGTTGATGAGGATGCTCCCCTGGAAACAGCCGGCT
GGTGTCTCATCACAGAAAGCGGAATGGGAGACGGTGGAAAGTTAATTTGT
TCTGGTCGATTTCGTTGGACGCGAAGACTTTGTGGATGTCTCTTGCAACA
TGACTCGAAAGATGAGTTGTAG
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