Ggra594.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra594.t1
Unique NameGgra594.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:36858..39358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra594Ggra594Gracilaria gracilis GNS1m malegenetig00000203_pilon 36858..39358 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra594.t1.start1Ggra594.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 36858..36860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra594.t1.CDS1Ggra594.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 36858..36893 +
Ggra594.t1.CDS2Ggra594.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000203_pilon 36958..37240 +
Ggra594.t1.CDS3Ggra594.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000203_pilon 37352..37427 +
Ggra594.t1.CDS4Ggra594.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000203_pilon 37527..38226 +
Ggra594.t1.CDS5Ggra594.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000203_pilon 39030..39089 +
Ggra594.t1.CDS6Ggra594.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000203_pilon 39293..39358 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra594.t1.exon1Ggra594.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 36858..36893 +
Ggra594.t1.exon2Ggra594.t1.exon2Gracilaria gracilis GNS1m maleexontig00000203_pilon 36958..37240 +
Ggra594.t1.exon3Ggra594.t1.exon3Gracilaria gracilis GNS1m maleexontig00000203_pilon 37352..37427 +
Ggra594.t1.exon4Ggra594.t1.exon4Gracilaria gracilis GNS1m maleexontig00000203_pilon 37527..38226 +
Ggra594.t1.exon5Ggra594.t1.exon5Gracilaria gracilis GNS1m maleexontig00000203_pilon 39030..39089 +
Ggra594.t1.exon6Ggra594.t1.exon6Gracilaria gracilis GNS1m maleexontig00000203_pilon 39293..39358 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra594.t1.intron1Ggra594.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000203_pilon 36894..36957 +
Ggra594.t1.intron2Ggra594.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000203_pilon 37241..37351 +
Ggra594.t1.intron3Ggra594.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000203_pilon 37428..37526 +
Ggra594.t1.intron4Ggra594.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000203_pilon 38227..39029 +
Ggra594.t1.intron5Ggra594.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000203_pilon 39090..39292 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra594.t1.stop1Ggra594.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 39356..39358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra594.t1Ggra594.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 36858..39358 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra594.t1 ID=Ggra594.t1|Name=Ggra594.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MVYEHNTLPCGTHREDITSPEDIGCSTCVLLYHSSPDKTHAWNRRNGYWW
NRSEQICLVMLTTSGLKRNASRSVTREIDKPDWVAACIRREGRTASCLLR
TEELALAVPVCVTFVPFLKPSNDWQSAFKRTVDISAKKTLLLKNPIVTFA
VATNLVGAASHAMFLNLLCLRRVYGDGFTLPLTTPSRRSKRRVVAFSTGF
LAFVVATWVGYVIHAGNVSTRLAETVSELLGGLRRAMTAIDWKASTAFKV
TDAMRVSIAMSMALGVLLGAGVGLISGLEPAVVIGVSASMAMGCVFVMSF
AILHGVNALRAVAFALFVSVCLPFGFGFGFGAGILVGVFLGLEDADEIRE
KTLDFVNNFGDFVRVRCAPKFGSTGLKRLRDVVPRYACLPSMSETRLFTK
DKFSYV*
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spliced messenger RNA

>Ggra594.t1 ID=Ggra594.t1|Name=Ggra594.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000203_pilon:36858..39358+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATATGAACATAACACTCTACCTTGTGGTACACACCGTGAAGACAT
TACGTCCCCAGAAGATATTGGCTGCAGCACGTGTGTATTGCTGTACCACT
CTTCCCCAGACAAAACACACGCCTGGAACAGGAGGAACGGTTATTGGTGG
AACAGGTCAGAACAGATATGCTTGGTCATGCTCACAACCTCAGGCTTGAA
GCGAAACGCTTCCAGGTCTGTGACCCGTGAAATCGACAAACCAGATTGGG
TGGCAGCTTGCATAAGAAGAGAAGGGCGGACTGCGAGCTGTCTTCTTCGT
ACAGAAGAATTAGCTCTTGCGGTTCCTGTCTGCGTCACGTTTGTCCCATT
TCTCAAACCCTCTAATGATTGGCAAAGTGCTTTCAAGCGTACCGTTGATA
TCTCTGCGAAGAAGACGCTATTACTCAAGAACCCTATAGTGACCTTTGCG
GTCGCGACCAACTTGGTTGGGGCGGCATCGCATGCGATGTTCCTCAACCT
TCTGTGTCTTCGGAGAGTATACGGTGATGGATTCACGCTGCCGCTCACAA
CACCTTCAAGACGTTCAAAGCGGCGGGTTGTGGCATTTTCAACCGGATTC
CTGGCTTTTGTGGTAGCAACATGGGTCGGTTATGTAATTCACGCGGGCAA
TGTTTCTACAAGGCTGGCGGAGACCGTCAGCGAGCTACTTGGAGGATTGA
GAAGGGCAATGACAGCAATTGACTGGAAAGCGAGTACAGCGTTCAAAGTG
ACGGATGCAATGCGGGTGAGCATTGCGATGAGTATGGCATTGGGTGTGTT
GCTCGGAGCTGGAGTTGGACTCATCTCTGGCTTAGAACCTGCGGTTGTAA
TCGGAGTGAGCGCTTCAATGGCTATGGGCTGCGTGTTCGTCATGTCGTTT
GCAATATTACATGGAGTGAACGCATTGCGCGCGGTCGCATTCGCTCTATT
TGTCTCTGTATGTCTTCCATTTGGGTTCGGGTTTGGATTTGGCGCGGGTA
TTTTGGTTGGAGTGTTCCTCGGGTTGGAGGATGCCGATGAAATCCGAGAG
AAGACTCTTGACTTTGTTAACAATTTTGGCGACTTCGTTAGGGTACGGTG
TGCCCCCAAGTTTGGGAGTACTGGATTGAAACGATTGCGTGATGTTGTTC
CACGGTACGCATGTCTTCCTTCCATGTCCGAAACAAGATTGTTCACAAAA
GACAAGTTTTCTTATGTCTAA
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protein sequence of Ggra594.t1

>Ggra594.t1 ID=Ggra594.t1|Name=Ggra594.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MVYEHNTLPCGTHREDITSPEDIGCSTCVLLYHSSPDKTHAWNRRNGYWW
NRSEQICLVMLTTSGLKRNASRSVTREIDKPDWVAACIRREGRTASCLLR
TEELALAVPVCVTFVPFLKPSNDWQSAFKRTVDISAKKTLLLKNPIVTFA
VATNLVGAASHAMFLNLLCLRRVYGDGFTLPLTTPSRRSKRRVVAFSTGF
LAFVVATWVGYVIHAGNVSTRLAETVSELLGGLRRAMTAIDWKASTAFKV
TDAMRVSIAMSMALGVLLGAGVGLISGLEPAVVIGVSASMAMGCVFVMSF
AILHGVNALRAVAFALFVSVCLPFGFGFGFGAGILVGVFLGLEDADEIRE
KTLDFVNNFGDFVRVRCAPKFGSTGLKRLRDVVPRYACLPSMSETRLFTK
DKFSYV*
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mRNA from alignment at tig00000203_pilon:36858..39358+

Legend: start_codonpolypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra594.t1 ID=Ggra594.t1|Name=Ggra594.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2501bp|location=Sequence derived from alignment at tig00000203_pilon:36858..39358+ (Gracilaria gracilis GNS1m male)
ATGGTATATGAACATAACACTCTACCTTGTGGTACAGTAAGTTACCGATC
AACTCATTCAATCAGAGGTAACGAATAGGCTTTACTGATATCTTGTAAAG
CACCGTGAAGACATTACGTCCCCAGAAGATATTGGCTGCAGCACGTGTGT
ATTGCTGTACCACTCTTCCCCAGACAAAACACACGCCTGGAACAGGAGGA
ACGGTTATTGGTGGAACAGGTCAGAACAGATATGCTTGGTCATGCTCACA
ACCTCAGGCTTGAAGCGAAACGCTTCCAGGTCTGTGACCCGTGAAATCGA
CAAACCAGATTGGGTGGCAGCTTGCATAAGAAGAGAAGGGCGGACTGCGA
GCTGTCTTCTTCGTACAGAAGAATTAGCTCTTGGTACGCACCGTGTATGC
ACTCGCCCTCTTGAGCTGTTGGCCATGGGCAATATAGCGGTTCCATTCTA
GCCTTGGTTGTTGCGGTGGTTCTAGTTTTCGACATCGTTACGAGCGGTTC
CTGTCTGCGTCACGTTTGTCCCATTTCTCAAACCCTCTAATGATTGGCAA
AGTGCTTTCAAGCGTACCGTGTATGTCCAAAAGGGTGTTCTCTGTCGGGC
CGAAAACGTTTTGCAAGTCTTCCCCTTCAGCCCGCATGCAATTTCGTTCT
ACCAGCGGTTGCGGTGCAGTGATATCTCTGCGAAGAAGACGCTATTACTC
AAGAACCCTATAGTGACCTTTGCGGTCGCGACCAACTTGGTTGGGGCGGC
ATCGCATGCGATGTTCCTCAACCTTCTGTGTCTTCGGAGAGTATACGGTG
ATGGATTCACGCTGCCGCTCACAACACCTTCAAGACGTTCAAAGCGGCGG
GTTGTGGCATTTTCAACCGGATTCCTGGCTTTTGTGGTAGCAACATGGGT
CGGTTATGTAATTCACGCGGGCAATGTTTCTACAAGGCTGGCGGAGACCG
TCAGCGAGCTACTTGGAGGATTGAGAAGGGCAATGACAGCAATTGACTGG
AAAGCGAGTACAGCGTTCAAAGTGACGGATGCAATGCGGGTGAGCATTGC
GATGAGTATGGCATTGGGTGTGTTGCTCGGAGCTGGAGTTGGACTCATCT
CTGGCTTAGAACCTGCGGTTGTAATCGGAGTGAGCGCTTCAATGGCTATG
GGCTGCGTGTTCGTCATGTCGTTTGCAATATTACATGGAGTGAACGCATT
GCGCGCGGTCGCATTCGCTCTATTTGTCTCTGTATGTCTTCCATTTGGGT
TCGGGTTTGGATTTGGCGCGGGTATTTTGGTTGGAGTGTTCCTCGGGTTG
GAGGATGCCGATGAAATCCGAGAGAAGACTCTTGACTTTGTTAACAATTT
TGGCGACTTCGTTAGGGTAGTAACTGCGTTTACATTGGAAATATTGTAGC
ATAGCTTGTCTAACTCAAAGGAAACGCGGCTGTTCAGGAGCTGCGTTTTC
TCAGCTAACTGATCAAGAAACCCTCTGCATTGCACATATTATATCTTACT
GATTCGAAACGCAGATAcgcttgttctcttcttctttactatggtcagcc
gccccttatttcgaggcggcagtagttctatctagagatagttctctctc
ttaaagaagcccaaaaaccgtgactccgtcgggggttttggactccgtaa
gagtcccagttgcttagtcgtttcgctccctccgacgctacacggagtta
aggagacaggcacaccgcgagaaggcgagtagctagtgcccACGCTTGTT
CTCATTCTCTGTATCTACTCAAAGAGTTCTAGCGAATCTACGGAGATCAC
TTTCTCAAGTAGTTCTCTCTCTTCGGACACTGCGGGGGCGAAATTTGCCC
TTGTAATACCTACATCGAGACGCGGAGGCGGAAGCTGGTGTTCAAAAACC
TCATGTGCCACCGAGAGGACTATTGGGCGAATCGAATACATTCGTGAGTT
CTATAACATATGACGTTCTGAACGGGCCCGGACTTCGTTCTAGAAGCGTA
CTCAGGGCAAAATGAGTCCGGCTATCCCCGTTTGTTGAGCATATGTTTGA
GTCCAACTCCAACCGTCTTACAACTGCTGCTCCTCACCTGCTATCAACTC
ACTCAAATCATGGGGCGATTGCGTGCGCGTTCTTCGCAATCTACGAAGGT
GAATTCGCTTCATACTCTTCAGCGGTGTGCCCCCAAGTTTGGGAGTACTG
GATTGAAACGATTGCGTGATGTTGTTCCACGGGTACGTTGTCGGCCTATC
GCTTGGGATTTCGTTGAGTGGTTCTGGGTCAGAAACGTGCGAATACGAAA
TAGCAGACCCGGCTGCTGCTTGCGGAACTAACATCGCCCCGAACGCGCTC
GCAGAAGCGAACGTACTTGCAGAAGCGAAAGCGCCGTCATAACATGAACA
ACGCATCACTAACCGGTAGCGTTCCTACCTTCCAGTACGCATGTCTTCCT
TCCATGTCCGAAACAAGATTGTTCACAAAAGACAAGTTTTCTTATGTCTA
A
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Coding sequence (CDS) from alignment at tig00000203_pilon:36858..39358+

>Ggra594.t1 ID=Ggra594.t1|Name=Ggra594.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000203_pilon:36858..39358+ (Gracilaria gracilis GNS1m male)
ATGGTATATGAACATAACACTCTACCTTGTGGTACACACCGTGAAGACAT
TACGTCCCCAGAAGATATTGGCTGCAGCACGTGTGTATTGCTGTACCACT
CTTCCCCAGACAAAACACACGCCTGGAACAGGAGGAACGGTTATTGGTGG
AACAGGTCAGAACAGATATGCTTGGTCATGCTCACAACCTCAGGCTTGAA
GCGAAACGCTTCCAGGTCTGTGACCCGTGAAATCGACAAACCAGATTGGG
TGGCAGCTTGCATAAGAAGAGAAGGGCGGACTGCGAGCTGTCTTCTTCGT
ACAGAAGAATTAGCTCTTGCGGTTCCTGTCTGCGTCACGTTTGTCCCATT
TCTCAAACCCTCTAATGATTGGCAAAGTGCTTTCAAGCGTACCGTTGATA
TCTCTGCGAAGAAGACGCTATTACTCAAGAACCCTATAGTGACCTTTGCG
GTCGCGACCAACTTGGTTGGGGCGGCATCGCATGCGATGTTCCTCAACCT
TCTGTGTCTTCGGAGAGTATACGGTGATGGATTCACGCTGCCGCTCACAA
CACCTTCAAGACGTTCAAAGCGGCGGGTTGTGGCATTTTCAACCGGATTC
CTGGCTTTTGTGGTAGCAACATGGGTCGGTTATGTAATTCACGCGGGCAA
TGTTTCTACAAGGCTGGCGGAGACCGTCAGCGAGCTACTTGGAGGATTGA
GAAGGGCAATGACAGCAATTGACTGGAAAGCGAGTACAGCGTTCAAAGTG
ACGGATGCAATGCGGGTGAGCATTGCGATGAGTATGGCATTGGGTGTGTT
GCTCGGAGCTGGAGTTGGACTCATCTCTGGCTTAGAACCTGCGGTTGTAA
TCGGAGTGAGCGCTTCAATGGCTATGGGCTGCGTGTTCGTCATGTCGTTT
GCAATATTACATGGAGTGAACGCATTGCGCGCGGTCGCATTCGCTCTATT
TGTCTCTGTATGTCTTCCATTTGGGTTCGGGTTTGGATTTGGCGCGGGTA
TTTTGGTTGGAGTGTTCCTCGGGTTGGAGGATGCCGATGAAATCCGAGAG
AAGACTCTTGACTTTGTTAACAATTTTGGCGACTTCGTTAGGGTACGGTG
TGCCCCCAAGTTTGGGAGTACTGGATTGAAACGATTGCGTGATGTTGTTC
CACGGTACGCATGTCTTCCTTCCATGTCCGAAACAAGATTGTTCACAAAA
GACAAGTTTTCTTATGTCTAA
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