Ggra5926.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5926.t1
Unique Name	Ggra5926.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	592

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:562716..564788 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5926	Ggra5926	Gracilaria gracilis GNS1m male	gene	tig00000068_pilon 562716..564788 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5926.t1	Ggra5926.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000068_pilon 562716..564788 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5926.t1.start1	Ggra5926.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000068_pilon 562716..562718 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5926.t1.CDS1	Ggra5926.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 562716..563901 +
Ggra5926.t1.CDS2	Ggra5926.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 564010..564183 +
Ggra5926.t1.CDS3	Ggra5926.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 564271..564404 +
Ggra5926.t1.CDS4	Ggra5926.t1.CDS4	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 564507..564788 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5926.t1.exon1	Ggra5926.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 562716..563901 +
Ggra5926.t1.exon2	Ggra5926.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 564010..564183 +
Ggra5926.t1.exon3	Ggra5926.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 564271..564404 +
Ggra5926.t1.exon4	Ggra5926.t1.exon4	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 564507..564788 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5926.t1.intron1	Ggra5926.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000068_pilon 563902..564009 +
Ggra5926.t1.intron2	Ggra5926.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000068_pilon 564184..564270 +
Ggra5926.t1.intron3	Ggra5926.t1.intron3	Gracilaria gracilis GNS1m male	intron	tig00000068_pilon 564405..564506 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5926.t1.stop1	Ggra5926.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000068_pilon 564786..564788 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000068_pilon:562716..564788+
coding sequence from alignment at tig00000068_pilon:562716..564788+

mRNA sequence

>Ggra5926.t1 ID=Ggra5926.t1|Name=Ggra5926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=592bp
MIVFTAIFLLMFPASASRLEDFQDINCSSTDPAQRLQDAGEAGNCLSAVR
DQRYHQEFEKCKENVCFLFIHEPPIVTYSEAVFHKEDNVKQMQLPFLCKN
PSARHRSLGGLAFDILGSTSAREEYCAWVGPLHSCTWNALVDFATMKGKE
EGYQFALVGPMLETPQRKCYHFASTSWWDGKMVVVGRNKRENMVTVHPVW
QLISPFQPNTWIVVGSVIALFVIVCLLIVYRFHVFRGKSIITAITAYFVF
MGEGGKALATGRVAREEECSRQRLRSKASSSIDLEAASSLQSSSSYEDVS
LQNDFNDSKREVPLVETEQKEAFLTKFSLATSLFRISLIAFLAMFSLFYE
VAVVNFLFQQQSLQITKDVIHFTLDELTKYALVQDTAMEAIWNMRVNPRS
TKFDERNKSQIPWKRCQNGAECFSWLLDEKNPVQFYVTYELDAMHLIQTK
ANCELVTMFATKGTIYEFNSGWLFTEQVPSGKRRNFDRELGALKISGRLS
ELIGRIPELCAPNLGSSIAFLIILLPVAFLVLPPLVCSALVAICWRTINT
KEDNESPVLPDSNTPIGQNGGETPVSSKSRYLSTSFGDDSF*

spliced messenger RNA

>Ggra5926.t1 ID=Ggra5926.t1|Name=Ggra5926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000068_pilon:562716..564788+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGTGTTCACTGCTATCTTTCTTTTGATGTTCCCGGCCTCAGCAAG
CCGCCTCGAAGACTTTCAAGATATCAACTGCTCATCCACCGACCCCGCAC
AAAGGCTCCAAGATGCAGGAGAGGCTGGTAACTGTCTGAGTGCCGTTCGC
GATCAACGATATCATCAGGAATTCGAGAAGTGCAAAGAGAACGTGTGCTT
CCTCTTCATCCATGAACCGCCAATCGTGACTTACAGTGAAGCTGTTTTCC
ATAAGGAAGACAACGTGAAGCAAATGCAACTACCTTTCTTGTGCAAGAAC
CCAAGCGCGAGGCATAGATCTCTTGGAGGGTTGGCGTTCGACATCTTGGG
AAGTACCAGTGCCCGGGAAGAATACTGTGCGTGGGTCGGACCTCTGCATT
CATGTACGTGGAACGCGCTCGTCGACTTTGCGACCATGAAGGGAAAGGAA
GAAGGATATCAGTTCGCCCTGGTGGGTCCCATGTTAGAAACACCGCAGAG
AAAGTGCTATCATTTTGCGAGTACTTCATGGTGGGACGGAAAAATGGTGG
TAGTGGGAAGAAACAAACGCGAAAACATGGTCACCGTACATCCGGTTTGG
CAGCTTATTAGCCCATTTCAACCGAATACTTGGATTGTTGTGGGAAGTGT
GATAGCACTTTTTGTGATTGTGTGTCTTTTGATCGTGTATCGATTTCATG
TATTCCGTGGGAAGTCAATAATCACAGCTATAACCGCTTATTTTGTGTTT
ATGGGAGAAGGGGGCAAGGCATTGGCTACAGGCCGTGTAGCAAGAGAAGA
AGAATGTTCTAGACAACGTTTGAGATCCAAAGCGAGTAGCTCAATCGATC
TGGAAGCTGCGTCGTCTCTCCAAAGCTCATCAAGTTATGAAGATGTATCA
CTTCAGAATGATTTCAATGATTCTAAAAGAGAGGTACCCTTAGTAGAAAC
CGAACAGAAAGAAGCGTTTCTGACTAAGTTCAGCCTTGCAACCTCATTGT
TTCGCATATCGCTCATCGCGTTTCTGGCAATGTTTTCTTTGTTTTATGAG
GTAGCAGTCGTCAACTTTCTTTTTCAGCAACAGAGTCTTCAAATTACGAA
AGACGTCATACATTTTACATTGGACGAGTTGACAAAATATGCTTTAGTAC
AAGACACGGCCATGGAGGCCATTTGGAATATGAGAGTGAATCCTAGGAGT
ACCAAATTTGATGAGAGAAATAAGTCTCAGATTCCATGGAAACGCTGCCA
GAACGGGGCAGAATGCTTTAGTTGGCTTCTCGACGAAAAGAACCCCGTCC
AATTCTACGTGACTTACGAGCTGGATGCCATGCACTTGATTCAAACAAAA
GCCAATTGCGAATTGGTAACCATGTTTGCAACAAAAGGAACAATCTATGA
ATTCAACAGTGGGTGGCTATTCACCGAGCAAGTCCCGTCCGGGAAGCGCA
GAAACTTCGATCGGGAACTCGGTGCATTGAAAATCAGTGGAAGGCTGTCC
GAGTTGATTGGGAGGATCCCTGAATTGTGTGCTCCAAACCTGGGCTCAAG
TATAGCCTTTTTGATTATTCTGCTTCCTGTTGCGTTCCTTGTTCTTCCGC
CTCTAGTCTGCTCAGCGTTGGTGGCAATATGCTGGCGGACGATCAATACC
AAAGAGGACAACGAATCTCCTGTACTTCCGGATTCTAATACACCCATTGG
GCAGAATGGCGGCGAAACACCTGTATCTTCTAAATCGAGGTATCTTTCTA
CAAGCTTCGGAGATGATTCCTTTTGA

protein sequence of Ggra5926.t1

>Ggra5926.t1 ID=Ggra5926.t1|Name=Ggra5926.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=592bp
MIVFTAIFLLMFPASASRLEDFQDINCSSTDPAQRLQDAGEAGNCLSAVR
DQRYHQEFEKCKENVCFLFIHEPPIVTYSEAVFHKEDNVKQMQLPFLCKN
PSARHRSLGGLAFDILGSTSAREEYCAWVGPLHSCTWNALVDFATMKGKE
EGYQFALVGPMLETPQRKCYHFASTSWWDGKMVVVGRNKRENMVTVHPVW
QLISPFQPNTWIVVGSVIALFVIVCLLIVYRFHVFRGKSIITAITAYFVF
MGEGGKALATGRVAREEECSRQRLRSKASSSIDLEAASSLQSSSSYEDVS
LQNDFNDSKREVPLVETEQKEAFLTKFSLATSLFRISLIAFLAMFSLFYE
VAVVNFLFQQQSLQITKDVIHFTLDELTKYALVQDTAMEAIWNMRVNPRS
TKFDERNKSQIPWKRCQNGAECFSWLLDEKNPVQFYVTYELDAMHLIQTK
ANCELVTMFATKGTIYEFNSGWLFTEQVPSGKRRNFDRELGALKISGRLS
ELIGRIPELCAPNLGSSIAFLIILLPVAFLVLPPLVCSALVAICWRTINT
KEDNESPVLPDSNTPIGQNGGETPVSSKSRYLSTSFGDDSF*

mRNA from alignment at tig00000068_pilon:562716..564788+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5926.t1 ID=Ggra5926.t1|Name=Ggra5926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2073bp|location=Sequence derived from alignment at tig00000068_pilon:562716..564788+ (Gracilaria gracilis GNS1m male)
ATGATTGTGTTCACTGCTATCTTTCTTTTGATGTTCCCGGCCTCAGCAAG
CCGCCTCGAAGACTTTCAAGATATCAACTGCTCATCCACCGACCCCGCAC
AAAGGCTCCAAGATGCAGGAGAGGCTGGTAACTGTCTGAGTGCCGTTCGC
GATCAACGATATCATCAGGAATTCGAGAAGTGCAAAGAGAACGTGTGCTT
CCTCTTCATCCATGAACCGCCAATCGTGACTTACAGTGAAGCTGTTTTCC
ATAAGGAAGACAACGTGAAGCAAATGCAACTACCTTTCTTGTGCAAGAAC
CCAAGCGCGAGGCATAGATCTCTTGGAGGGTTGGCGTTCGACATCTTGGG
AAGTACCAGTGCCCGGGAAGAATACTGTGCGTGGGTCGGACCTCTGCATT
CATGTACGTGGAACGCGCTCGTCGACTTTGCGACCATGAAGGGAAAGGAA
GAAGGATATCAGTTCGCCCTGGTGGGTCCCATGTTAGAAACACCGCAGAG
AAAGTGCTATCATTTTGCGAGTACTTCATGGTGGGACGGAAAAATGGTGG
TAGTGGGAAGAAACAAACGCGAAAACATGGTCACCGTACATCCGGTTTGG
CAGCTTATTAGCCCATTTCAACCGAATACTTGGATTGTTGTGGGAAGTGT
GATAGCACTTTTTGTGATTGTGTGTCTTTTGATCGTGTATCGATTTCATG
TATTCCGTGGGAAGTCAATAATCACAGCTATAACCGCTTATTTTGTGTTT
ATGGGAGAAGGGGGCAAGGCATTGGCTACAGGCCGTGTAGCAAGAGAAGA
AGAATGTTCTAGACAACGTTTGAGATCCAAAGCGAGTAGCTCAATCGATC
TGGAAGCTGCGTCGTCTCTCCAAAGCTCATCAAGTTATGAAGATGTATCA
CTTCAGAATGATTTCAATGATTCTAAAAGAGAGGTACCCTTAGTAGAAAC
CGAACAGAAAGAAGCGTTTCTGACTAAGTTCAGCCTTGCAACCTCATTGT
TTCGCATATCGCTCATCGCGTTTCTGGCAATGTTTTCTTTGTTTTATGAG
GTAGCAGTCGTCAACTTTCTTTTTCAGCAACAGAGTCTTCAAATTACGAA
AGACGTCATACATTTTACATTGGACGAGTTGACAAAATATGCTTTAGTAC
AAGACACGGCCATGGAGGCCATTTGGAATATGAGAGGTAAGGATATAATT
CGTTATTTTGTGCTCACTCTTGTATCGATAATCTCTGATGCCAACGCCTA
TCGCCATCACCTGATCTGCGAGCGAAATGTATCTATACCAACAGTGAATC
CTAGGAGTACCAAATTTGATGAGAGAAATAAGTCTCAGATTCCATGGAAA
CGCTGCCAGAACGGGGCAGAATGCTTTAGTTGGCTTCTCGACGAAAAGAA
CCCCGTCCAATTCTACGTGACTTACGAGCTGGATGCCATGCACTTGATTC
AAACAAAAGCCAATTGCGGTGAGTAGCATGCTTGAAGATACCCATGGGCA
GTGCACGAGTTTTCCGGTTGCTGACCGCCGTATTCTTTTGCTTCGGATGA
CTCAGAATTGGTAACCATGTTTGCAACAAAAGGAACAATCTATGAATTCA
ACAGTGGGTGGCTATTCACCGAGCAAGTCCCGTCCGGGAAGCGCAGAAAC
TTCGATCGGGAACTCGGTGCATTGAAAATCAGTGGAAGGGTACGTCTAGC
CAACCTCATTACTATTATTCCAACGGTCGGAATCCGAACGCTGACGTTTG
ATTATCTTTCTCTCTAATGTTGAACCGAATATCCTTTGCAGCTGTCCGAG
TTGATTGGGAGGATCCCTGAATTGTGTGCTCCAAACCTGGGCTCAAGTAT
AGCCTTTTTGATTATTCTGCTTCCTGTTGCGTTCCTTGTTCTTCCGCCTC
TAGTCTGCTCAGCGTTGGTGGCAATATGCTGGCGGACGATCAATACCAAA
GAGGACAACGAATCTCCTGTACTTCCGGATTCTAATACACCCATTGGGCA
GAATGGCGGCGAAACACCTGTATCTTCTAAATCGAGGTATCTTTCTACAA
GCTTCGGAGATGATTCCTTTTGA

Coding sequence (CDS) from alignment at tig00000068_pilon:562716..564788+

>Ggra5926.t1 ID=Ggra5926.t1|Name=Ggra5926.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1776bp|location=Sequence derived from alignment at tig00000068_pilon:562716..564788+ (Gracilaria gracilis GNS1m male)
ATGATTGTGTTCACTGCTATCTTTCTTTTGATGTTCCCGGCCTCAGCAAG
CCGCCTCGAAGACTTTCAAGATATCAACTGCTCATCCACCGACCCCGCAC
AAAGGCTCCAAGATGCAGGAGAGGCTGGTAACTGTCTGAGTGCCGTTCGC
GATCAACGATATCATCAGGAATTCGAGAAGTGCAAAGAGAACGTGTGCTT
CCTCTTCATCCATGAACCGCCAATCGTGACTTACAGTGAAGCTGTTTTCC
ATAAGGAAGACAACGTGAAGCAAATGCAACTACCTTTCTTGTGCAAGAAC
CCAAGCGCGAGGCATAGATCTCTTGGAGGGTTGGCGTTCGACATCTTGGG
AAGTACCAGTGCCCGGGAAGAATACTGTGCGTGGGTCGGACCTCTGCATT
CATGTACGTGGAACGCGCTCGTCGACTTTGCGACCATGAAGGGAAAGGAA
GAAGGATATCAGTTCGCCCTGGTGGGTCCCATGTTAGAAACACCGCAGAG
AAAGTGCTATCATTTTGCGAGTACTTCATGGTGGGACGGAAAAATGGTGG
TAGTGGGAAGAAACAAACGCGAAAACATGGTCACCGTACATCCGGTTTGG
CAGCTTATTAGCCCATTTCAACCGAATACTTGGATTGTTGTGGGAAGTGT
GATAGCACTTTTTGTGATTGTGTGTCTTTTGATCGTGTATCGATTTCATG
TATTCCGTGGGAAGTCAATAATCACAGCTATAACCGCTTATTTTGTGTTT
ATGGGAGAAGGGGGCAAGGCATTGGCTACAGGCCGTGTAGCAAGAGAAGA
AGAATGTTCTAGACAACGTTTGAGATCCAAAGCGAGTAGCTCAATCGATC
TGGAAGCTGCGTCGTCTCTCCAAAGCTCATCAAGTTATGAAGATGTATCA
CTTCAGAATGATTTCAATGATTCTAAAAGAGAGGTACCCTTAGTAGAAAC
CGAACAGAAAGAAGCGTTTCTGACTAAGTTCAGCCTTGCAACCTCATTGT
TTCGCATATCGCTCATCGCGTTTCTGGCAATGTTTTCTTTGTTTTATGAG
GTAGCAGTCGTCAACTTTCTTTTTCAGCAACAGAGTCTTCAAATTACGAA
AGACGTCATACATTTTACATTGGACGAGTTGACAAAATATGCTTTAGTAC
AAGACACGGCCATGGAGGCCATTTGGAATATGAGAGTGAATCCTAGGAGT
ACCAAATTTGATGAGAGAAATAAGTCTCAGATTCCATGGAAACGCTGCCA
GAACGGGGCAGAATGCTTTAGTTGGCTTCTCGACGAAAAGAACCCCGTCC
AATTCTACGTGACTTACGAGCTGGATGCCATGCACTTGATTCAAACAAAA
GCCAATTGCGAATTGGTAACCATGTTTGCAACAAAAGGAACAATCTATGA
ATTCAACAGTGGGTGGCTATTCACCGAGCAAGTCCCGTCCGGGAAGCGCA
GAAACTTCGATCGGGAACTCGGTGCATTGAAAATCAGTGGAAGGCTGTCC
GAGTTGATTGGGAGGATCCCTGAATTGTGTGCTCCAAACCTGGGCTCAAG
TATAGCCTTTTTGATTATTCTGCTTCCTGTTGCGTTCCTTGTTCTTCCGC
CTCTAGTCTGCTCAGCGTTGGTGGCAATATGCTGGCGGACGATCAATACC
AAAGAGGACAACGAATCTCCTGTACTTCCGGATTCTAATACACCCATTGG
GCAGAATGGCGGCGAAACACCTGTATCTTCTAAATCGAGGTATCTTTCTA
CAAGCTTCGGAGATGATTCCTTTTGA