Ggra5918.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5918.t1
Unique NameGgra5918.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length560
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:527274..528953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708965.1
PFAMsAmidinotransf
Max annot lvl2759|Eukaryota
Evalue8.4e-139
EggNOG OGsCOG4874@1|root,2QV2Z@2759|Eukaryota
DescriptionAmidinotransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5918Ggra5918Gracilaria gracilis GNS1m malegenetig00000068_pilon 527274..528953 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5918.t1.stop1Ggra5918.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 527274..527276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5918.t1.CDS1Ggra5918.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 527274..528953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5918.t1.exon1Ggra5918.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 527274..528953 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5918.t1.start1Ggra5918.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 528951..528953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5918.t1Ggra5918.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 527274..528953 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5918.t1 ID=Ggra5918.t1|Name=Ggra5918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=560bp
MLRASRLLTRLTPLTSSSSRAPRRFPNTRPPPRPTPPSSASAHLLSPPTA
APADPPPPIPAPSPAPSTSHSLPLPGGDEHRQYYQRQHHALYAAWRNHDL
PRHARVHPADLIPGTTAVFIGVGLETNWPAVLSALEGDVFRHRKVAIVRD
VFDRSEHRKTLSDYLAFVADDAVAVLRSIVKPSPTERRFVNEFVWVDGAY
KPVRTDVELISYLHGAGFRVVPVDTSSQLARMRDGVDPIPVQQSTNHVLA
CAPTAFSFNQSAAADNHFMSDHPLELDLHDGGAALRRKVLTEFCGLHDAL
VDRVNGVGAHVHLFTHEDWHNTPDACFPNNTFSTHTNIETGSSCVLVLYP
MKADTRRKERRLVQRLLTRGRYTHIYDMTREEETDPPRFLEGTGSLVLDR
INRFAYVALSQRSDLGLARAWAKVMDYNLVPFTSVDREGRPIYHTNVMMS
VGTRVAVVCLESIVDKRERDMVVASLEQTGHSIVDISYQQVEHFCGNVLE
LESFYADQVMVMSTAAHNAFTEKQKDILLSGLERLVHADISTIENVGGGG
VRCTIAELH*
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spliced messenger RNA

>Ggra5918.t1 ID=Ggra5918.t1|Name=Ggra5918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000068_pilon:527274..528953- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCGAGCGTCTCGTCTCCTCACTCGCCTCACCCCACTGACCTCCTC
TTCCTCCCGTGCTCCGCGCCGCTTCCCCAACACGCGTCCGCCGCCCCGTC
CGACGCCGCCTTCTTCCGCGTCCGCGCACCTGCTATCGCCACCCACTGCC
GCCCCCGCTGATCCGCCGCCGCCTATCCCCGCCCCGTCTCCGGCTCCGTC
CACCAGTCATTCGCTCCCGCTGCCTGGCGGAGACGAGCATCGTCAGTACT
ACCAGCGTCAGCACCACGCGCTGTACGCCGCCTGGCGTAATCACGACCTC
CCTCGCCACGCGAGGGTCCACCCGGCGGACCTCATCCCGGGTACCACCGC
TGTCTTCATCGGCGTTGGATTGGAGACCAACTGGCCGGCTGTGCTGTCCG
CGCTTGAGGGCGACGTTTTTAGGCATCGAAAGGTTGCTATAGTTCGCGAT
GTCTTTGACAGGTCCGAGCATCGTAAAACGCTTTCTGATTACCTTGCCTT
TGTTGCGGACGATGCCGTTGCCGTCTTACGCTCCATCGTCAAACCCTCTC
CGACCGAGCGTCGTTTCGTCAATGAATTCGTCTGGGTAGATGGTGCGTAC
AAGCCTGTTCGCACCGATGTCGAACTCATCTCTTACTTGCACGGCGCTGG
TTTTCGAGTTGTTCCTGTGGACACTTCGTCCCAACTGGCTCGCATGCGAG
ACGGAGTCGACCCTATTCCCGTACAGCAATCTACCAACCATGTGCTGGCC
TGCGCTCCCACTGCATTTTCCTTCAACCAAAGCGCTGCCGCAGACAATCA
TTTCATGAGTGACCATCCGCTCGAACTCGATCTTCACGATGGAGGAGCCG
CTCTACGTCGCAAGGTACTCACGGAGTTTTGTGGATTGCATGATGCCTTG
GTTGATCGCGTGAACGGCGTCGGAGCCCACGTTCATCTTTTCACGCATGA
GGATTGGCATAATACCCCCGATGCCTGCTTCCCCAATAATACTTTTTCGA
CTCATACTAACATTGAGACGGGCAGCTCGTGTGTACTTGTTCTTTATCCC
ATGAAAGCCGATACCAGACGAAAGGAACGACGACTGGTGCAGCGTTTACT
AACGAGAGGAAGATACACTCATATTTATGACATGACCAGGGAGGAGGAGA
CTGACCCACCACGCTTCCTGGAAGGTACTGGCAGTCTGGTGCTTGACCGT
ATTAATCGATTTGCTTATGTGGCGCTTTCGCAGCGCTCGGATCTGGGACT
TGCTCGTGCGTGGGCAAAGGTCATGGATTACAACCTTGTTCCGTTCACTT
CTGTTGACCGTGAGGGACGTCCAATCTACCATACAAATGTCATGATGTCT
GTCGGCACGCGTGTGGCTGTCGTTTGCCTTGAGTCCATCGTCGATAAACG
AGAGCGTGACATGGTTGTGGCCAGCTTGGAACAAACTGGCCATAGTATTG
TTGACATTTCTTATCAACAAGTGGAACATTTCTGTGGTAATGTGCTTGAA
CTTGAAAGCTTTTATGCCGACCAGGTTATGGTGATGAGTACTGCTGCACA
CAATGCGTTTACTGAAAAGCAGAAGGATATCTTGCTTTCTGGACTAGAAC
GTTTGGTGCACGCGGATATTTCTACCATTGAGAACGTTGGTGGCGGCGGC
GTTCGATGCACGATTGCTGAGCTTCATTAA
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protein sequence of Ggra5918.t1

>Ggra5918.t1 ID=Ggra5918.t1|Name=Ggra5918.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=560bp
MLRASRLLTRLTPLTSSSSRAPRRFPNTRPPPRPTPPSSASAHLLSPPTA
APADPPPPIPAPSPAPSTSHSLPLPGGDEHRQYYQRQHHALYAAWRNHDL
PRHARVHPADLIPGTTAVFIGVGLETNWPAVLSALEGDVFRHRKVAIVRD
VFDRSEHRKTLSDYLAFVADDAVAVLRSIVKPSPTERRFVNEFVWVDGAY
KPVRTDVELISYLHGAGFRVVPVDTSSQLARMRDGVDPIPVQQSTNHVLA
CAPTAFSFNQSAAADNHFMSDHPLELDLHDGGAALRRKVLTEFCGLHDAL
VDRVNGVGAHVHLFTHEDWHNTPDACFPNNTFSTHTNIETGSSCVLVLYP
MKADTRRKERRLVQRLLTRGRYTHIYDMTREEETDPPRFLEGTGSLVLDR
INRFAYVALSQRSDLGLARAWAKVMDYNLVPFTSVDREGRPIYHTNVMMS
VGTRVAVVCLESIVDKRERDMVVASLEQTGHSIVDISYQQVEHFCGNVLE
LESFYADQVMVMSTAAHNAFTEKQKDILLSGLERLVHADISTIENVGGGG
VRCTIAELH*
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mRNA from alignment at tig00000068_pilon:527274..528953-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5918.t1 ID=Ggra5918.t1|Name=Ggra5918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000068_pilon:527274..528953- (Gracilaria gracilis GNS1m male)
ATGCTCCGAGCGTCTCGTCTCCTCACTCGCCTCACCCCACTGACCTCCTC
TTCCTCCCGTGCTCCGCGCCGCTTCCCCAACACGCGTCCGCCGCCCCGTC
CGACGCCGCCTTCTTCCGCGTCCGCGCACCTGCTATCGCCACCCACTGCC
GCCCCCGCTGATCCGCCGCCGCCTATCCCCGCCCCGTCTCCGGCTCCGTC
CACCAGTCATTCGCTCCCGCTGCCTGGCGGAGACGAGCATCGTCAGTACT
ACCAGCGTCAGCACCACGCGCTGTACGCCGCCTGGCGTAATCACGACCTC
CCTCGCCACGCGAGGGTCCACCCGGCGGACCTCATCCCGGGTACCACCGC
TGTCTTCATCGGCGTTGGATTGGAGACCAACTGGCCGGCTGTGCTGTCCG
CGCTTGAGGGCGACGTTTTTAGGCATCGAAAGGTTGCTATAGTTCGCGAT
GTCTTTGACAGGTCCGAGCATCGTAAAACGCTTTCTGATTACCTTGCCTT
TGTTGCGGACGATGCCGTTGCCGTCTTACGCTCCATCGTCAAACCCTCTC
CGACCGAGCGTCGTTTCGTCAATGAATTCGTCTGGGTAGATGGTGCGTAC
AAGCCTGTTCGCACCGATGTCGAACTCATCTCTTACTTGCACGGCGCTGG
TTTTCGAGTTGTTCCTGTGGACACTTCGTCCCAACTGGCTCGCATGCGAG
ACGGAGTCGACCCTATTCCCGTACAGCAATCTACCAACCATGTGCTGGCC
TGCGCTCCCACTGCATTTTCCTTCAACCAAAGCGCTGCCGCAGACAATCA
TTTCATGAGTGACCATCCGCTCGAACTCGATCTTCACGATGGAGGAGCCG
CTCTACGTCGCAAGGTACTCACGGAGTTTTGTGGATTGCATGATGCCTTG
GTTGATCGCGTGAACGGCGTCGGAGCCCACGTTCATCTTTTCACGCATGA
GGATTGGCATAATACCCCCGATGCCTGCTTCCCCAATAATACTTTTTCGA
CTCATACTAACATTGAGACGGGCAGCTCGTGTGTACTTGTTCTTTATCCC
ATGAAAGCCGATACCAGACGAAAGGAACGACGACTGGTGCAGCGTTTACT
AACGAGAGGAAGATACACTCATATTTATGACATGACCAGGGAGGAGGAGA
CTGACCCACCACGCTTCCTGGAAGGTACTGGCAGTCTGGTGCTTGACCGT
ATTAATCGATTTGCTTATGTGGCGCTTTCGCAGCGCTCGGATCTGGGACT
TGCTCGTGCGTGGGCAAAGGTCATGGATTACAACCTTGTTCCGTTCACTT
CTGTTGACCGTGAGGGACGTCCAATCTACCATACAAATGTCATGATGTCT
GTCGGCACGCGTGTGGCTGTCGTTTGCCTTGAGTCCATCGTCGATAAACG
AGAGCGTGACATGGTTGTGGCCAGCTTGGAACAAACTGGCCATAGTATTG
TTGACATTTCTTATCAACAAGTGGAACATTTCTGTGGTAATGTGCTTGAA
CTTGAAAGCTTTTATGCCGACCAGGTTATGGTGATGAGTACTGCTGCACA
CAATGCGTTTACTGAAAAGCAGAAGGATATCTTGCTTTCTGGACTAGAAC
GTTTGGTGCACGCGGATATTTCTACCATTGAGAACGTTGGTGGCGGCGGC
GTTCGATGCACGATTGCTGAGCTTCATTAA
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Coding sequence (CDS) from alignment at tig00000068_pilon:527274..528953-

>Ggra5918.t1 ID=Ggra5918.t1|Name=Ggra5918.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00000068_pilon:527274..528953- (Gracilaria gracilis GNS1m male)
ATGCTCCGAGCGTCTCGTCTCCTCACTCGCCTCACCCCACTGACCTCCTC
TTCCTCCCGTGCTCCGCGCCGCTTCCCCAACACGCGTCCGCCGCCCCGTC
CGACGCCGCCTTCTTCCGCGTCCGCGCACCTGCTATCGCCACCCACTGCC
GCCCCCGCTGATCCGCCGCCGCCTATCCCCGCCCCGTCTCCGGCTCCGTC
CACCAGTCATTCGCTCCCGCTGCCTGGCGGAGACGAGCATCGTCAGTACT
ACCAGCGTCAGCACCACGCGCTGTACGCCGCCTGGCGTAATCACGACCTC
CCTCGCCACGCGAGGGTCCACCCGGCGGACCTCATCCCGGGTACCACCGC
TGTCTTCATCGGCGTTGGATTGGAGACCAACTGGCCGGCTGTGCTGTCCG
CGCTTGAGGGCGACGTTTTTAGGCATCGAAAGGTTGCTATAGTTCGCGAT
GTCTTTGACAGGTCCGAGCATCGTAAAACGCTTTCTGATTACCTTGCCTT
TGTTGCGGACGATGCCGTTGCCGTCTTACGCTCCATCGTCAAACCCTCTC
CGACCGAGCGTCGTTTCGTCAATGAATTCGTCTGGGTAGATGGTGCGTAC
AAGCCTGTTCGCACCGATGTCGAACTCATCTCTTACTTGCACGGCGCTGG
TTTTCGAGTTGTTCCTGTGGACACTTCGTCCCAACTGGCTCGCATGCGAG
ACGGAGTCGACCCTATTCCCGTACAGCAATCTACCAACCATGTGCTGGCC
TGCGCTCCCACTGCATTTTCCTTCAACCAAAGCGCTGCCGCAGACAATCA
TTTCATGAGTGACCATCCGCTCGAACTCGATCTTCACGATGGAGGAGCCG
CTCTACGTCGCAAGGTACTCACGGAGTTTTGTGGATTGCATGATGCCTTG
GTTGATCGCGTGAACGGCGTCGGAGCCCACGTTCATCTTTTCACGCATGA
GGATTGGCATAATACCCCCGATGCCTGCTTCCCCAATAATACTTTTTCGA
CTCATACTAACATTGAGACGGGCAGCTCGTGTGTACTTGTTCTTTATCCC
ATGAAAGCCGATACCAGACGAAAGGAACGACGACTGGTGCAGCGTTTACT
AACGAGAGGAAGATACACTCATATTTATGACATGACCAGGGAGGAGGAGA
CTGACCCACCACGCTTCCTGGAAGGTACTGGCAGTCTGGTGCTTGACCGT
ATTAATCGATTTGCTTATGTGGCGCTTTCGCAGCGCTCGGATCTGGGACT
TGCTCGTGCGTGGGCAAAGGTCATGGATTACAACCTTGTTCCGTTCACTT
CTGTTGACCGTGAGGGACGTCCAATCTACCATACAAATGTCATGATGTCT
GTCGGCACGCGTGTGGCTGTCGTTTGCCTTGAGTCCATCGTCGATAAACG
AGAGCGTGACATGGTTGTGGCCAGCTTGGAACAAACTGGCCATAGTATTG
TTGACATTTCTTATCAACAAGTGGAACATTTCTGTGGTAATGTGCTTGAA
CTTGAAAGCTTTTATGCCGACCAGGTTATGGTGATGAGTACTGCTGCACA
CAATGCGTTTACTGAAAAGCAGAAGGATATCTTGCTTTCTGGACTAGAAC
GTTTGGTGCACGCGGATATTTCTACCATTGAGAACGTTGGTGGCGGCGGC
GTTCGATGCACGATTGCTGAGCTTCATTAA
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