Ggra5913.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5913.t1
Unique NameGgra5913.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:497070..498296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708078.1
Preferred namePCID2
PFAMsPCI
Max annot lvl2759|Eukaryota
GOsGO:0000160,GO:0000375,GO:0000377,GO:0000398,GO:0000749,GO:0000754,GO:0000956,GO:0000972,GO:0000973,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007088,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009723,GO:0009725,GO:0009755,GO:0009873,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009987,GO:0010033,GO:0010466,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010941,GO:0010951,GO:0010965,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016973,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0019439,GO:0019904,GO:0022622,GO:0023051,GO:0023052,GO:0023058,GO:0030071,GO:0030162,GO:0031136,GO:0031137,GO:0031139,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032870,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035556,GO:0042221,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043900,GO:0043902,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0045577,GO:0045579,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045787,GO:0045861,GO:0045893,GO:0045931,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0046999,GO:0048364,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048583,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051028,GO:0051094,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051252,GO:0051254,GO:0051276,GO:0051336,GO:0051346,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0060968,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070390,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071033,GO:0071166,GO:0071310,GO:0071369,GO:0071426,GO:0071427,GO:0071444,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090304,GO:0097159,GO:0097659,GO:0099402,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902105,GO:1902107,GO:1902680,GO:1903311,GO:1903504,GO:1903506,GO:1903508,GO:1903706,GO:1903708,GO:1905818,GO:1990904,GO:2000026,GO:2000112,GO:2000116,GO:2000117,GO:2000241,GO:2000243,GO:2001141
Evalue2.52e-71
EggNOG OGsCOG5600@1|root,KOG2688@2759|Eukaryota
Descriptionposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5913Ggra5913Gracilaria gracilis GNS1m malegenetig00000068_pilon 497070..498296 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5913.t1.stop1Ggra5913.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 497070..497072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5913.t1.CDS1Ggra5913.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 497070..498296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5913.t1.exon1Ggra5913.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 497070..498296 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5913.t1.start1Ggra5913.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 498294..498296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5913.t1Ggra5913.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 497070..498296 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5913.t1 ID=Ggra5913.t1|Name=Ggra5913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=409bp
MSALSRYNEDVEDAVRHKKSEELRELLRLSSGRATAAMEQYVVEGGNLPS
RMADPWDRLPEIVERRFVAAAALNANNWVTAFDNLSQMLTLLTGTIHYET
AWCISAFVALCVDLRILAEEADRQLTASNQKAGKLEEAERVLKKGFTLTN
NDRASIEEQSKKIGTLGIVNQLLKIYFKLNNLRLCGNLTKSVNLRSSGYF
DSFPISHRATYRYFTGRLHLYENRYEEAVSDLEFAFQHVPQNMQLNRRQV
LLYLIPSKILTGSLPSDTMLAVQNMTWFMDIVKAIKSGNVGLFNDAVERY
EEFFIRKALYFAVENMKPLVFRSLVRRVQTMWMNNKIPLRCISASLKVCS
VDMEGDEVECILANLIFNGYIKGYISHKVGYLVLSKKNPFPRVSDRSKMI
KRRADEGA*
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spliced messenger RNA

>Ggra5913.t1 ID=Ggra5913.t1|Name=Ggra5913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000068_pilon:497070..498296- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCCTGTCACGGTATAACGAAGACGTAGAGGATGCTGTGCGTCA
CAAGAAGAGTGAAGAGTTACGAGAACTCTTGCGTCTATCATCAGGAAGAG
CCACAGCTGCCATGGAACAATATGTTGTCGAGGGGGGCAATCTTCCAAGC
AGAATGGCAGATCCCTGGGACCGGCTGCCTGAAATAGTGGAAAGACGCTT
CGTTGCGGCCGCGGCTTTGAATGCGAACAACTGGGTCACTGCGTTCGACA
ACCTTTCCCAAATGCTAACTCTTCTTACTGGAACAATACATTACGAAACC
GCATGGTGCATTTCTGCATTTGTTGCCCTCTGTGTTGACTTGCGCATCCT
CGCAGAAGAGGCCGATCGACAACTAACCGCTTCAAACCAAAAGGCAGGCA
AGTTAGAGGAGGCTGAACGCGTACTCAAGAAGGGCTTCACGTTGACAAAT
AATGACAGAGCCTCTATCGAGGAGCAGTCGAAGAAAATCGGCACCCTTGG
TATCGTCAACCAACTGCTCAAGATATACTTCAAGCTCAACAACCTAAGGC
TGTGCGGAAATCTAACGAAAAGTGTCAATCTAAGGTCTTCTGGGTACTTT
GACAGTTTCCCAATTTCTCACCGTGCCACATACCGGTATTTCACAGGACG
GCTCCACCTCTACGAAAACAGGTATGAGGAGGCTGTGAGCGACTTGGAGT
TTGCTTTTCAACACGTACCACAGAATATGCAGCTAAACAGAAGACAAGTG
TTGCTATATCTCATACCCTCGAAAATCTTGACAGGAAGCCTACCCTCCGA
CACAATGCTAGCAGTTCAGAACATGACTTGGTTCATGGACATCGTTAAAG
CCATCAAATCAGGAAACGTGGGTCTCTTTAATGACGCAGTCGAACGCTAT
GAGGAATTCTTTATCCGCAAGGCTCTGTACTTTGCCGTGGAGAATATGAA
ACCGCTTGTGTTCCGCTCGTTAGTGAGACGAGTGCAAACCATGTGGATGA
ACAACAAAATACCTTTGAGATGTATTAGCGCGAGCTTAAAAGTGTGTTCA
GTGGACATGGAGGGTGATGAAGTTGAATGCATTCTGGCCAACTTGATATT
CAATGGATACATAAAAGGATATATTTCTCACAAGGTAGGGTACCTGGTTT
TGTCGAAAAAGAACCCATTCCCTCGCGTAAGCGACAGGTCAAAGATGATC
AAGAGGAGGGCAGATGAAGGGGCATAG
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protein sequence of Ggra5913.t1

>Ggra5913.t1 ID=Ggra5913.t1|Name=Ggra5913.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=409bp
MSALSRYNEDVEDAVRHKKSEELRELLRLSSGRATAAMEQYVVEGGNLPS
RMADPWDRLPEIVERRFVAAAALNANNWVTAFDNLSQMLTLLTGTIHYET
AWCISAFVALCVDLRILAEEADRQLTASNQKAGKLEEAERVLKKGFTLTN
NDRASIEEQSKKIGTLGIVNQLLKIYFKLNNLRLCGNLTKSVNLRSSGYF
DSFPISHRATYRYFTGRLHLYENRYEEAVSDLEFAFQHVPQNMQLNRRQV
LLYLIPSKILTGSLPSDTMLAVQNMTWFMDIVKAIKSGNVGLFNDAVERY
EEFFIRKALYFAVENMKPLVFRSLVRRVQTMWMNNKIPLRCISASLKVCS
VDMEGDEVECILANLIFNGYIKGYISHKVGYLVLSKKNPFPRVSDRSKMI
KRRADEGA*
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mRNA from alignment at tig00000068_pilon:497070..498296-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5913.t1 ID=Ggra5913.t1|Name=Ggra5913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000068_pilon:497070..498296- (Gracilaria gracilis GNS1m male)
ATGTCCGCCCTGTCACGGTATAACGAAGACGTAGAGGATGCTGTGCGTCA
CAAGAAGAGTGAAGAGTTACGAGAACTCTTGCGTCTATCATCAGGAAGAG
CCACAGCTGCCATGGAACAATATGTTGTCGAGGGGGGCAATCTTCCAAGC
AGAATGGCAGATCCCTGGGACCGGCTGCCTGAAATAGTGGAAAGACGCTT
CGTTGCGGCCGCGGCTTTGAATGCGAACAACTGGGTCACTGCGTTCGACA
ACCTTTCCCAAATGCTAACTCTTCTTACTGGAACAATACATTACGAAACC
GCATGGTGCATTTCTGCATTTGTTGCCCTCTGTGTTGACTTGCGCATCCT
CGCAGAAGAGGCCGATCGACAACTAACCGCTTCAAACCAAAAGGCAGGCA
AGTTAGAGGAGGCTGAACGCGTACTCAAGAAGGGCTTCACGTTGACAAAT
AATGACAGAGCCTCTATCGAGGAGCAGTCGAAGAAAATCGGCACCCTTGG
TATCGTCAACCAACTGCTCAAGATATACTTCAAGCTCAACAACCTAAGGC
TGTGCGGAAATCTAACGAAAAGTGTCAATCTAAGGTCTTCTGGGTACTTT
GACAGTTTCCCAATTTCTCACCGTGCCACATACCGGTATTTCACAGGACG
GCTCCACCTCTACGAAAACAGGTATGAGGAGGCTGTGAGCGACTTGGAGT
TTGCTTTTCAACACGTACCACAGAATATGCAGCTAAACAGAAGACAAGTG
TTGCTATATCTCATACCCTCGAAAATCTTGACAGGAAGCCTACCCTCCGA
CACAATGCTAGCAGTTCAGAACATGACTTGGTTCATGGACATCGTTAAAG
CCATCAAATCAGGAAACGTGGGTCTCTTTAATGACGCAGTCGAACGCTAT
GAGGAATTCTTTATCCGCAAGGCTCTGTACTTTGCCGTGGAGAATATGAA
ACCGCTTGTGTTCCGCTCGTTAGTGAGACGAGTGCAAACCATGTGGATGA
ACAACAAAATACCTTTGAGATGTATTAGCGCGAGCTTAAAAGTGTGTTCA
GTGGACATGGAGGGTGATGAAGTTGAATGCATTCTGGCCAACTTGATATT
CAATGGATACATAAAAGGATATATTTCTCACAAGGTAGGGTACCTGGTTT
TGTCGAAAAAGAACCCATTCCCTCGCGTAAGCGACAGGTCAAAGATGATC
AAGAGGAGGGCAGATGAAGGGGCATAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:497070..498296-

>Ggra5913.t1 ID=Ggra5913.t1|Name=Ggra5913.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000068_pilon:497070..498296- (Gracilaria gracilis GNS1m male)
ATGTCCGCCCTGTCACGGTATAACGAAGACGTAGAGGATGCTGTGCGTCA
CAAGAAGAGTGAAGAGTTACGAGAACTCTTGCGTCTATCATCAGGAAGAG
CCACAGCTGCCATGGAACAATATGTTGTCGAGGGGGGCAATCTTCCAAGC
AGAATGGCAGATCCCTGGGACCGGCTGCCTGAAATAGTGGAAAGACGCTT
CGTTGCGGCCGCGGCTTTGAATGCGAACAACTGGGTCACTGCGTTCGACA
ACCTTTCCCAAATGCTAACTCTTCTTACTGGAACAATACATTACGAAACC
GCATGGTGCATTTCTGCATTTGTTGCCCTCTGTGTTGACTTGCGCATCCT
CGCAGAAGAGGCCGATCGACAACTAACCGCTTCAAACCAAAAGGCAGGCA
AGTTAGAGGAGGCTGAACGCGTACTCAAGAAGGGCTTCACGTTGACAAAT
AATGACAGAGCCTCTATCGAGGAGCAGTCGAAGAAAATCGGCACCCTTGG
TATCGTCAACCAACTGCTCAAGATATACTTCAAGCTCAACAACCTAAGGC
TGTGCGGAAATCTAACGAAAAGTGTCAATCTAAGGTCTTCTGGGTACTTT
GACAGTTTCCCAATTTCTCACCGTGCCACATACCGGTATTTCACAGGACG
GCTCCACCTCTACGAAAACAGGTATGAGGAGGCTGTGAGCGACTTGGAGT
TTGCTTTTCAACACGTACCACAGAATATGCAGCTAAACAGAAGACAAGTG
TTGCTATATCTCATACCCTCGAAAATCTTGACAGGAAGCCTACCCTCCGA
CACAATGCTAGCAGTTCAGAACATGACTTGGTTCATGGACATCGTTAAAG
CCATCAAATCAGGAAACGTGGGTCTCTTTAATGACGCAGTCGAACGCTAT
GAGGAATTCTTTATCCGCAAGGCTCTGTACTTTGCCGTGGAGAATATGAA
ACCGCTTGTGTTCCGCTCGTTAGTGAGACGAGTGCAAACCATGTGGATGA
ACAACAAAATACCTTTGAGATGTATTAGCGCGAGCTTAAAAGTGTGTTCA
GTGGACATGGAGGGTGATGAAGTTGAATGCATTCTGGCCAACTTGATATT
CAATGGATACATAAAAGGATATATTTCTCACAAGGTAGGGTACCTGGTTT
TGTCGAAAAAGAACCCATTCCCTCGCGTAAGCGACAGGTCAAAGATGATC
AAGAGGAGGGCAGATGAAGGGGCATAG
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