Ggra5911.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5911.t1
Unique NameGgra5911.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:494336..495568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708412.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K07298
KEGG Pathwayko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04530,ko04920,map04068,map04140,map04150,map04151,map04152,map04211,map04530,map04920
Evalue4.19e-97
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryG
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5911Ggra5911Gracilaria gracilis GNS1m malegenetig00000068_pilon 494336..495568 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5911.t1.stop1Ggra5911.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 494336..494338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5911.t1.CDS1Ggra5911.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 494336..495568 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5911.t1.exon1Ggra5911.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 494336..495568 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5911.t1.start1Ggra5911.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 495566..495568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5911.t1Ggra5911.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 494336..495568 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5911.t1 ID=Ggra5911.t1|Name=Ggra5911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp
MSLLWSRSSDDPADFLFPRRSAPEAHGAELDEQSFPFSFDSSSSDDDFPS
APRRPKFIQGSKSSFLLGEKLGEGAFAVVKEGIDQNSLRLVAVKVLDMRR
IRKMRGGSDAVLREVRIQKKLKRHPNLIQLIDVIRPEQSSKTYIVLELAN
GCTVAELAERNGGTLPHTQVANYAYQVLRGLHYMHGRGVVHRDIKPANMM
MTTNGTLKISDFGVAEFLDEYNQDDSVSRTSGSPAFQAPEIARGDDDYSG
MKVDVWALGISVFLLITGRIPFHGENLMQLFENIGAGEFEIPQDLPEDLK
DVLAKMLTVDWRERQSVFELLRHPWIVKGSLVLSDAEKEELGWAKIRAVK
VNILDAVKQLYGNDEDMVQTSTLTDEPPPSEPSPPEAPPPKRDEPRTTLR
AFSTISCCIC*
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spliced messenger RNA

>Ggra5911.t1 ID=Ggra5911.t1|Name=Ggra5911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000068_pilon:494336..495568- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTTGCTCTGGTCGCGCTCCAGTGACGACCCTGCCGACTTCCTCTT
TCCAAGACGCTCTGCCCCAGAGGCGCACGGCGCCGAGCTCGACGAACAAT
CCTTTCCGTTCTCATTCGATAGCTCCTCTTCAGACGATGATTTCCCAAGC
GCTCCGCGAAGACCAAAGTTCATTCAAGGTTCAAAGAGTTCGTTTCTGCT
TGGCGAGAAGCTCGGCGAAGGCGCTTTCGCAGTTGTCAAGGAAGGAATAG
ATCAAAATTCGTTGCGCCTGGTCGCCGTTAAGGTTTTGGACATGAGACGA
ATCAGAAAGATGAGAGGCGGTTCAGACGCCGTATTAAGAGAAGTCCGCAT
TCAAAAGAAGCTAAAGCGACATCCCAATCTCATTCAACTCATCGATGTTA
TTCGCCCAGAACAATCCTCGAAGACTTATATCGTTCTTGAGCTTGCGAAT
GGCTGTACAGTTGCCGAGTTAGCGGAGCGAAATGGCGGCACCTTGCCGCA
CACACAAGTAGCAAACTACGCGTATCAAGTTCTCAGGGGCTTGCATTACA
TGCATGGACGAGGCGTTGTACATAGAGACATAAAACCTGCCAACATGATG
ATGACCACCAACGGTACTCTCAAGATATCAGATTTTGGCGTAGCCGAGTT
TCTTGATGAATACAATCAGGACGATAGCGTTAGCAGAACATCTGGAAGTC
CAGCCTTTCAAGCGCCAGAAATCGCCAGAGGTGATGACGACTACTCTGGT
ATGAAAGTGGATGTGTGGGCTCTAGGAATTTCCGTTTTCTTGCTCATCAC
AGGACGCATTCCATTTCACGGCGAAAATCTCATGCAGCTCTTTGAGAACA
TAGGAGCTGGCGAATTCGAAATACCACAAGACCTACCTGAAGACCTCAAA
GACGTGTTAGCTAAAATGTTGACCGTCGATTGGAGGGAGAGACAAAGTGT
TTTCGAGCTACTCAGGCATCCATGGATCGTTAAAGGCAGTCTTGTGTTAT
CGGACGCGGAAAAGGAAGAACTGGGCTGGGCCAAGATTCGGGCGGTTAAG
GTCAATATCTTGGACGCTGTAAAACAGTTGTATGGCAATGACGAAGACAT
GGTTCAGACATCAACTTTAACAGATGAGCCGCCTCCCTCAGAGCCTTCCC
CACCTGAAGCCCCTCCTCCGAAGCGAGACGAACCTCGAACCACACTTCGA
GCGTTTTCCACCATTTCGTGTTGCATATGCTAG
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protein sequence of Ggra5911.t1

>Ggra5911.t1 ID=Ggra5911.t1|Name=Ggra5911.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=411bp
MSLLWSRSSDDPADFLFPRRSAPEAHGAELDEQSFPFSFDSSSSDDDFPS
APRRPKFIQGSKSSFLLGEKLGEGAFAVVKEGIDQNSLRLVAVKVLDMRR
IRKMRGGSDAVLREVRIQKKLKRHPNLIQLIDVIRPEQSSKTYIVLELAN
GCTVAELAERNGGTLPHTQVANYAYQVLRGLHYMHGRGVVHRDIKPANMM
MTTNGTLKISDFGVAEFLDEYNQDDSVSRTSGSPAFQAPEIARGDDDYSG
MKVDVWALGISVFLLITGRIPFHGENLMQLFENIGAGEFEIPQDLPEDLK
DVLAKMLTVDWRERQSVFELLRHPWIVKGSLVLSDAEKEELGWAKIRAVK
VNILDAVKQLYGNDEDMVQTSTLTDEPPPSEPSPPEAPPPKRDEPRTTLR
AFSTISCCIC*
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mRNA from alignment at tig00000068_pilon:494336..495568-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5911.t1 ID=Ggra5911.t1|Name=Ggra5911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000068_pilon:494336..495568- (Gracilaria gracilis GNS1m male)
ATGAGTTTGCTCTGGTCGCGCTCCAGTGACGACCCTGCCGACTTCCTCTT
TCCAAGACGCTCTGCCCCAGAGGCGCACGGCGCCGAGCTCGACGAACAAT
CCTTTCCGTTCTCATTCGATAGCTCCTCTTCAGACGATGATTTCCCAAGC
GCTCCGCGAAGACCAAAGTTCATTCAAGGTTCAAAGAGTTCGTTTCTGCT
TGGCGAGAAGCTCGGCGAAGGCGCTTTCGCAGTTGTCAAGGAAGGAATAG
ATCAAAATTCGTTGCGCCTGGTCGCCGTTAAGGTTTTGGACATGAGACGA
ATCAGAAAGATGAGAGGCGGTTCAGACGCCGTATTAAGAGAAGTCCGCAT
TCAAAAGAAGCTAAAGCGACATCCCAATCTCATTCAACTCATCGATGTTA
TTCGCCCAGAACAATCCTCGAAGACTTATATCGTTCTTGAGCTTGCGAAT
GGCTGTACAGTTGCCGAGTTAGCGGAGCGAAATGGCGGCACCTTGCCGCA
CACACAAGTAGCAAACTACGCGTATCAAGTTCTCAGGGGCTTGCATTACA
TGCATGGACGAGGCGTTGTACATAGAGACATAAAACCTGCCAACATGATG
ATGACCACCAACGGTACTCTCAAGATATCAGATTTTGGCGTAGCCGAGTT
TCTTGATGAATACAATCAGGACGATAGCGTTAGCAGAACATCTGGAAGTC
CAGCCTTTCAAGCGCCAGAAATCGCCAGAGGTGATGACGACTACTCTGGT
ATGAAAGTGGATGTGTGGGCTCTAGGAATTTCCGTTTTCTTGCTCATCAC
AGGACGCATTCCATTTCACGGCGAAAATCTCATGCAGCTCTTTGAGAACA
TAGGAGCTGGCGAATTCGAAATACCACAAGACCTACCTGAAGACCTCAAA
GACGTGTTAGCTAAAATGTTGACCGTCGATTGGAGGGAGAGACAAAGTGT
TTTCGAGCTACTCAGGCATCCATGGATCGTTAAAGGCAGTCTTGTGTTAT
CGGACGCGGAAAAGGAAGAACTGGGCTGGGCCAAGATTCGGGCGGTTAAG
GTCAATATCTTGGACGCTGTAAAACAGTTGTATGGCAATGACGAAGACAT
GGTTCAGACATCAACTTTAACAGATGAGCCGCCTCCCTCAGAGCCTTCCC
CACCTGAAGCCCCTCCTCCGAAGCGAGACGAACCTCGAACCACACTTCGA
GCGTTTTCCACCATTTCGTGTTGCATATGCTAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:494336..495568-

>Ggra5911.t1 ID=Ggra5911.t1|Name=Ggra5911.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1233bp|location=Sequence derived from alignment at tig00000068_pilon:494336..495568- (Gracilaria gracilis GNS1m male)
ATGAGTTTGCTCTGGTCGCGCTCCAGTGACGACCCTGCCGACTTCCTCTT
TCCAAGACGCTCTGCCCCAGAGGCGCACGGCGCCGAGCTCGACGAACAAT
CCTTTCCGTTCTCATTCGATAGCTCCTCTTCAGACGATGATTTCCCAAGC
GCTCCGCGAAGACCAAAGTTCATTCAAGGTTCAAAGAGTTCGTTTCTGCT
TGGCGAGAAGCTCGGCGAAGGCGCTTTCGCAGTTGTCAAGGAAGGAATAG
ATCAAAATTCGTTGCGCCTGGTCGCCGTTAAGGTTTTGGACATGAGACGA
ATCAGAAAGATGAGAGGCGGTTCAGACGCCGTATTAAGAGAAGTCCGCAT
TCAAAAGAAGCTAAAGCGACATCCCAATCTCATTCAACTCATCGATGTTA
TTCGCCCAGAACAATCCTCGAAGACTTATATCGTTCTTGAGCTTGCGAAT
GGCTGTACAGTTGCCGAGTTAGCGGAGCGAAATGGCGGCACCTTGCCGCA
CACACAAGTAGCAAACTACGCGTATCAAGTTCTCAGGGGCTTGCATTACA
TGCATGGACGAGGCGTTGTACATAGAGACATAAAACCTGCCAACATGATG
ATGACCACCAACGGTACTCTCAAGATATCAGATTTTGGCGTAGCCGAGTT
TCTTGATGAATACAATCAGGACGATAGCGTTAGCAGAACATCTGGAAGTC
CAGCCTTTCAAGCGCCAGAAATCGCCAGAGGTGATGACGACTACTCTGGT
ATGAAAGTGGATGTGTGGGCTCTAGGAATTTCCGTTTTCTTGCTCATCAC
AGGACGCATTCCATTTCACGGCGAAAATCTCATGCAGCTCTTTGAGAACA
TAGGAGCTGGCGAATTCGAAATACCACAAGACCTACCTGAAGACCTCAAA
GACGTGTTAGCTAAAATGTTGACCGTCGATTGGAGGGAGAGACAAAGTGT
TTTCGAGCTACTCAGGCATCCATGGATCGTTAAAGGCAGTCTTGTGTTAT
CGGACGCGGAAAAGGAAGAACTGGGCTGGGCCAAGATTCGGGCGGTTAAG
GTCAATATCTTGGACGCTGTAAAACAGTTGTATGGCAATGACGAAGACAT
GGTTCAGACATCAACTTTAACAGATGAGCCGCCTCCCTCAGAGCCTTCCC
CACCTGAAGCCCCTCCTCCGAAGCGAGACGAACCTCGAACCACACTTCGA
GCGTTTTCCACCATTTCGTGTTGCATATGCTAG
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