Ggra5906.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5906.t1
Unique NameGgra5906.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:482007..482681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5906Ggra5906Gracilaria gracilis GNS1m malegenetig00000068_pilon 482007..482681 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5906.t1.start1Ggra5906.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 482007..482009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5906.t1.CDS1Ggra5906.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 482007..482681 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5906.t1.exon1Ggra5906.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 482007..482681 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5906.t1.stop1Ggra5906.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 482679..482681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5906.t1Ggra5906.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 482007..482681 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5906.t1 ID=Ggra5906.t1|Name=Ggra5906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=225bp
MQPPPSSQVYAARVSVPLRSSVQAAAAPAGASYLYQPPPPRPSALEWAHV
RLSPLSLHTSAGALSPSPSPSPSRTPTRTRTPSPSPHALPAIDTLLMDAY
AGADGAPKEEEQQQQGVPPPQRAASPQRADLPQRADWSQRCSSSSSSAAQ
RAGGMSLRDDYWNTVLGADVSVHVGARAEGGANNKVLKYPSLRYPCKVWG
CTQMFKHRSSRSRHQKKLHPGSAA*
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spliced messenger RNA

>Ggra5906.t1 ID=Ggra5906.t1|Name=Ggra5906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000068_pilon:482007..482681+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCGCCGCCGTCGTCGCAAGTGTATGCAGCGCGAGTATCCGTTCC
GTTGCGCAGCAGTGTGCAAgccgccgccgcgccggccggcgcttcgtatc
tgtaccagccgccgccgccgcgccCAAGCGCGTTGGAGTGGGCGCACGTC
AGGCTGTCGCCGCTGTCGCTGCACACCAGCGCAGGCGCTCTgtcgccgtc
gccgtcgccgtcgccgtcgcgcacgcccactcgcacgcgtacgccgtcgc
cgtcgccgcacgcgcTGCCCGCCATCGACACTCTGCTCATGGATGCATAC
GCCGGCGCGGACGGCGCGCCGAAGGAGGAGGAGCAGCAGCAGCAGGGGGT
GCCTCCGCCGCAGCGCGCCGCCTCGCCGCAGCGCGCCGACTTGCCGCAGC
GCGCCGACTGGTCGCAGCGCTGCAGCAGCAGCAGCAGCAGCGCGGCGCAA
AGGGCAGGCGGCATGAGTCTGAGGGACGATTACTGGAACACGGTGCTGGG
CGCCGACGTGTCGGTGCACGTCGGGGCGCGCGCAGAAGGCGGCGCCAACA
ACAAGGTGCTCAAGTACCCGTCGCTACGCTATCCTTGCAAGGTGTGGGGC
TGCACGCAAATGTTCAAGCACCGCAGCTCCCGGAGCAGACATCAGAAGAA
GCTGCACCCGGGCAGCGCTGCATAA
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protein sequence of Ggra5906.t1

>Ggra5906.t1 ID=Ggra5906.t1|Name=Ggra5906.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=225bp
MQPPPSSQVYAARVSVPLRSSVQAAAAPAGASYLYQPPPPRPSALEWAHV
RLSPLSLHTSAGALSPSPSPSPSRTPTRTRTPSPSPHALPAIDTLLMDAY
AGADGAPKEEEQQQQGVPPPQRAASPQRADLPQRADWSQRCSSSSSSAAQ
RAGGMSLRDDYWNTVLGADVSVHVGARAEGGANNKVLKYPSLRYPCKVWG
CTQMFKHRSSRSRHQKKLHPGSAA*
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mRNA from alignment at tig00000068_pilon:482007..482681+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5906.t1 ID=Ggra5906.t1|Name=Ggra5906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000068_pilon:482007..482681+ (Gracilaria gracilis GNS1m male)
ATGCAACCGCCGCCGTCGTCGCAAGTGTATGCAGCGCGAGTATCCGTTCC
GTTGCGCAGCAGTGTGCAAgccgccgccgcgccggccggcgcttcgtatc
tgtaccagccgccgccgccgcgccCAAGCGCGTTGGAGTGGGCGCACGTC
AGGCTGTCGCCGCTGTCGCTGCACACCAGCGCAGGCGCTCTgtcgccgtc
gccgtcgccgtcgccgtcgcgcacgcccactcgcacgcgtacgccgtcgc
cgtcgccgcacgcgcTGCCCGCCATCGACACTCTGCTCATGGATGCATAC
GCCGGCGCGGACGGCGCGCCGAAGGAGGAGGAGCAGCAGCAGCAGGGGGT
GCCTCCGCCGCAGCGCGCCGCCTCGCCGCAGCGCGCCGACTTGCCGCAGC
GCGCCGACTGGTCGCAGCGCTGCAGCAGCAGCAGCAGCAGCGCGGCGCAA
AGGGCAGGCGGCATGAGTCTGAGGGACGATTACTGGAACACGGTGCTGGG
CGCCGACGTGTCGGTGCACGTCGGGGCGCGCGCAGAAGGCGGCGCCAACA
ACAAGGTGCTCAAGTACCCGTCGCTACGCTATCCTTGCAAGGTGTGGGGC
TGCACGCAAATGTTCAAGCACCGCAGCTCCCGGAGCAGACATCAGAAGAA
GCTGCACCCGGGCAGCGCTGCATAA
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Coding sequence (CDS) from alignment at tig00000068_pilon:482007..482681+

>Ggra5906.t1 ID=Ggra5906.t1|Name=Ggra5906.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=675bp|location=Sequence derived from alignment at tig00000068_pilon:482007..482681+ (Gracilaria gracilis GNS1m male)
ATGCAACCGCCGCCGTCGTCGCAAGTGTATGCAGCGCGAGTATCCGTTCC
GTTGCGCAGCAGTGTGCAAgccgccgccgcgccggccggcgcttcgtatc
tgtaccagccgccgccgccgcgccCAAGCGCGTTGGAGTGGGCGCACGTC
AGGCTGTCGCCGCTGTCGCTGCACACCAGCGCAGGCGCTCTgtcgccgtc
gccgtcgccgtcgccgtcgcgcacgcccactcgcacgcgtacgccgtcgc
cgtcgccgcacgcgcTGCCCGCCATCGACACTCTGCTCATGGATGCATAC
GCCGGCGCGGACGGCGCGCCGAAGGAGGAGGAGCAGCAGCAGCAGGGGGT
GCCTCCGCCGCAGCGCGCCGCCTCGCCGCAGCGCGCCGACTTGCCGCAGC
GCGCCGACTGGTCGCAGCGCTGCAGCAGCAGCAGCAGCAGCGCGGCGCAA
AGGGCAGGCGGCATGAGTCTGAGGGACGATTACTGGAACACGGTGCTGGG
CGCCGACGTGTCGGTGCACGTCGGGGCGCGCGCAGAAGGCGGCGCCAACA
ACAAGGTGCTCAAGTACCCGTCGCTACGCTATCCTTGCAAGGTGTGGGGC
TGCACGCAAATGTTCAAGCACCGCAGCTCCCGGAGCAGACATCAGAAGAA
GCTGCACCCGGGCAGCGCTGCATAA
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