Ggra5893.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5893.t1
Unique NameGgra5893.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:442702..443736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.D00577.1.p
PFAMsWD40
Max annot lvl35493|Streptophyta
GOsGO:0000003,GO:0000075,GO:0000151,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006282,GO:0006810,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0009555,GO:0009636,GO:0009663,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010035,GO:0010038,GO:0010044,GO:0010154,GO:0010162,GO:0010431,GO:0010496,GO:0010497,GO:0010564,GO:0016043,GO:0019219,GO:0019222,GO:0021700,GO:0022414,GO:0022611,GO:0031323,GO:0031461,GO:0031570,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034330,GO:0035670,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045216,GO:0045786,GO:0045787,GO:0048229,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048700,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051716,GO:0051726,GO:0060255,GO:0061458,GO:0065007,GO:0071156,GO:0071158,GO:0071695,GO:0071840,GO:0072718,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090567,GO:0097327,GO:0097439,GO:0099402,GO:1902494,GO:1990234,GO:2000026,GO:2000280,GO:2001020
Evalue2.5e-26
EggNOG OGsCOG2319@1|root,KOG0322@2759|Eukaryota,37IE2@33090|Viridiplantae,3GF2H@35493|Streptophyta,44F28@71274|asterids
DescriptionGuanine nucleotide-binding protein subunit beta-like protein 1 homolog
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5893Ggra5893Gracilaria gracilis GNS1m malegenetig00000068_pilon 442702..443736 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5893.t1.start1Ggra5893.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 442702..442704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5893.t1.CDS1Ggra5893.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 442702..443736 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5893.t1.exon1Ggra5893.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 442702..443736 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5893.t1.stop1Ggra5893.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 443734..443736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5893.t1Ggra5893.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 442702..443736 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5893.t1 ID=Ggra5893.t1|Name=Ggra5893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MGKRQRPHAKAVLRGHTAPVTSLSFHKSADTPHILYSGDENGGVRAWDCR
YEETVLLHSRPLALHESAVLTILQHESDVSTLLVQYKCGVVARVDVEYGV
RLSDFDAWNVRDVQIVGGDVRFDGYEERAVLSNGFCCICHAGRAVWVGAC
ADGDQVAVLYDDRGKVTLQKQLKIGSGVRKKGMVMSVCKCGQDIVTAYED
GSLATWDLRHCERPRNSVKVAPDAITSVTSSPFGRVAAAIGAFDKVVAVA
DLTQDKTEIVEQVDLNGGGGSQISWRRDGHTIATGGWDGVARIWDGRRKA
GSLLRPICSLRWHDGSITSVDYSWDCDSLASGGRDCCIALWNAL*
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spliced messenger RNA

>Ggra5893.t1 ID=Ggra5893.t1|Name=Ggra5893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000068_pilon:442702..443736+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGCGACAACGGCCGCACGCGAAGGCGGTGTTGCGCGGGCACAC
GGCGCCAGTCACGTCGCTCAGCTTTCACAAGAGCGCCGACACGCCGCACA
TTCTGTACAGCGGCGACGAGAACGGCGGCGTGCGCGCGTGGGATTGTCGC
TATGAGGAGACGGTGTTGCTGCACAGCCGCCCGCTGGCGCTGCACGAGTC
GGCCGTGCTGACCATTTTGCAGCATGAGAGCGATGTTTCCACGCTGCTCG
TGCAGTACAAGTGTGGTGTGGTGGCGCGGGTTGACGTGGAGTATGGCGTG
CGACTGAGCGATTTTGATGCCTGGAACGTCAGGGACGTTCAGATTGTTGG
CGGTGATGTTCGCTTTGATGGATATGAGGAACGGGCGGTTCTGAGCAATG
GCTTCTGTTGCATTTGCCACGCGGGAAGAGCGGTATGGGTCGGAGCTTGT
GCGGATGGCGATCAAGTCGCAGTTCTGTACGACGATCGTGGTAAGGTGAC
GCTACAAAAACAGCTCAAGATCGGCAGCGGTGTGCGCAAGAAGGGAATGG
TAATGAGTGTTTGTAAATGCGGACAAGATATAGTGACTGCGTATGAAGAC
GGGTCACTAGCAACATGGGATTTACGTCATTGTGAGCGTCCTAGAAACAG
CGTTAAAGTAGCGCCAGATGCGATAACAAGCGTGACAAGCAGCCCGTTTG
GCAGGGTTGCGGCGGCAATTGGCGCGTTCGATAAAGTTGTGGCAGTGGCC
GATTTGACACAAGACAAAACGGAGATTGTGGAACAGGTGGACTTGAACGG
CGGTGGAGGCAGTCAGATCAGCTGGAGACGAGATGGACACACAATCGCCA
CCGGCGGATGGGACGGCGTGGCACGCATTTGGGACGGTAGAAGAAAAGCA
GGAAGCTTACTTCGACCAATCTGTTCGCTAAGATGGCATGACGGCAGTAT
CACTAGCGTCGATTATAGCTGGGATTGCGACTCACTCGCAAGCGGAGGGC
GTGATTGTTGTATAGCACTATGGAACGCGTTGTGA
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protein sequence of Ggra5893.t1

>Ggra5893.t1 ID=Ggra5893.t1|Name=Ggra5893.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MGKRQRPHAKAVLRGHTAPVTSLSFHKSADTPHILYSGDENGGVRAWDCR
YEETVLLHSRPLALHESAVLTILQHESDVSTLLVQYKCGVVARVDVEYGV
RLSDFDAWNVRDVQIVGGDVRFDGYEERAVLSNGFCCICHAGRAVWVGAC
ADGDQVAVLYDDRGKVTLQKQLKIGSGVRKKGMVMSVCKCGQDIVTAYED
GSLATWDLRHCERPRNSVKVAPDAITSVTSSPFGRVAAAIGAFDKVVAVA
DLTQDKTEIVEQVDLNGGGGSQISWRRDGHTIATGGWDGVARIWDGRRKA
GSLLRPICSLRWHDGSITSVDYSWDCDSLASGGRDCCIALWNAL*
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mRNA from alignment at tig00000068_pilon:442702..443736+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5893.t1 ID=Ggra5893.t1|Name=Ggra5893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000068_pilon:442702..443736+ (Gracilaria gracilis GNS1m male)
ATGGGCAAGCGACAACGGCCGCACGCGAAGGCGGTGTTGCGCGGGCACAC
GGCGCCAGTCACGTCGCTCAGCTTTCACAAGAGCGCCGACACGCCGCACA
TTCTGTACAGCGGCGACGAGAACGGCGGCGTGCGCGCGTGGGATTGTCGC
TATGAGGAGACGGTGTTGCTGCACAGCCGCCCGCTGGCGCTGCACGAGTC
GGCCGTGCTGACCATTTTGCAGCATGAGAGCGATGTTTCCACGCTGCTCG
TGCAGTACAAGTGTGGTGTGGTGGCGCGGGTTGACGTGGAGTATGGCGTG
CGACTGAGCGATTTTGATGCCTGGAACGTCAGGGACGTTCAGATTGTTGG
CGGTGATGTTCGCTTTGATGGATATGAGGAACGGGCGGTTCTGAGCAATG
GCTTCTGTTGCATTTGCCACGCGGGAAGAGCGGTATGGGTCGGAGCTTGT
GCGGATGGCGATCAAGTCGCAGTTCTGTACGACGATCGTGGTAAGGTGAC
GCTACAAAAACAGCTCAAGATCGGCAGCGGTGTGCGCAAGAAGGGAATGG
TAATGAGTGTTTGTAAATGCGGACAAGATATAGTGACTGCGTATGAAGAC
GGGTCACTAGCAACATGGGATTTACGTCATTGTGAGCGTCCTAGAAACAG
CGTTAAAGTAGCGCCAGATGCGATAACAAGCGTGACAAGCAGCCCGTTTG
GCAGGGTTGCGGCGGCAATTGGCGCGTTCGATAAAGTTGTGGCAGTGGCC
GATTTGACACAAGACAAAACGGAGATTGTGGAACAGGTGGACTTGAACGG
CGGTGGAGGCAGTCAGATCAGCTGGAGACGAGATGGACACACAATCGCCA
CCGGCGGATGGGACGGCGTGGCACGCATTTGGGACGGTAGAAGAAAAGCA
GGAAGCTTACTTCGACCAATCTGTTCGCTAAGATGGCATGACGGCAGTAT
CACTAGCGTCGATTATAGCTGGGATTGCGACTCACTCGCAAGCGGAGGGC
GTGATTGTTGTATAGCACTATGGAACGCGTTGTGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:442702..443736+

>Ggra5893.t1 ID=Ggra5893.t1|Name=Ggra5893.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000068_pilon:442702..443736+ (Gracilaria gracilis GNS1m male)
ATGGGCAAGCGACAACGGCCGCACGCGAAGGCGGTGTTGCGCGGGCACAC
GGCGCCAGTCACGTCGCTCAGCTTTCACAAGAGCGCCGACACGCCGCACA
TTCTGTACAGCGGCGACGAGAACGGCGGCGTGCGCGCGTGGGATTGTCGC
TATGAGGAGACGGTGTTGCTGCACAGCCGCCCGCTGGCGCTGCACGAGTC
GGCCGTGCTGACCATTTTGCAGCATGAGAGCGATGTTTCCACGCTGCTCG
TGCAGTACAAGTGTGGTGTGGTGGCGCGGGTTGACGTGGAGTATGGCGTG
CGACTGAGCGATTTTGATGCCTGGAACGTCAGGGACGTTCAGATTGTTGG
CGGTGATGTTCGCTTTGATGGATATGAGGAACGGGCGGTTCTGAGCAATG
GCTTCTGTTGCATTTGCCACGCGGGAAGAGCGGTATGGGTCGGAGCTTGT
GCGGATGGCGATCAAGTCGCAGTTCTGTACGACGATCGTGGTAAGGTGAC
GCTACAAAAACAGCTCAAGATCGGCAGCGGTGTGCGCAAGAAGGGAATGG
TAATGAGTGTTTGTAAATGCGGACAAGATATAGTGACTGCGTATGAAGAC
GGGTCACTAGCAACATGGGATTTACGTCATTGTGAGCGTCCTAGAAACAG
CGTTAAAGTAGCGCCAGATGCGATAACAAGCGTGACAAGCAGCCCGTTTG
GCAGGGTTGCGGCGGCAATTGGCGCGTTCGATAAAGTTGTGGCAGTGGCC
GATTTGACACAAGACAAAACGGAGATTGTGGAACAGGTGGACTTGAACGG
CGGTGGAGGCAGTCAGATCAGCTGGAGACGAGATGGACACACAATCGCCA
CCGGCGGATGGGACGGCGTGGCACGCATTTGGGACGGTAGAAGAAAAGCA
GGAAGCTTACTTCGACCAATCTGTTCGCTAAGATGGCATGACGGCAGTAT
CACTAGCGTCGATTATAGCTGGGATTGCGACTCACTCGCAAGCGGAGGGC
GTGATTGTTGTATAGCACTATGGAACGCGTTGTGA
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