Ggra5869.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5869.t1
Unique Name	Ggra5869.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	692

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:372712..374787 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5869	Ggra5869	Gracilaria gracilis GNS1m male	gene	tig00000068_pilon 372712..374787 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5869.t1.start1	Ggra5869.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000068_pilon 372712..372714 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5869.t1.CDS1	Ggra5869.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 372712..374787 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5869.t1.exon1	Ggra5869.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 372712..374787 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5869.t1.stop1	Ggra5869.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000068_pilon 374785..374787 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5869.t1	Ggra5869.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000068_pilon 372712..374787 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000068_pilon:372712..374787+
coding sequence from alignment at tig00000068_pilon:372712..374787+

mRNA sequence

>Ggra5869.t1 ID=Ggra5869.t1|Name=Ggra5869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=692bp
MNQEVVRMCDIVKAFPSINHVLELYFLLNSEPKLWGCGKPLQLPVAVRTS
DNLRDGVDIDTVSLRDVAINERERVDIDTVSLRITCHDNRVITCSDPNSG
TTNAVMFSTSFVDLQNLFLRPMQRSPSNQQKACSMNSMIDMGGNLDLWIK
GYVLCQEDQSKAIRLRLLKAAAHFRKKGYIPSLSRGLDIIIIKAGKQTTW
FHLDESLPTVLLPNTPGLPFLNSDILRIAQEGHSQFRRYLTDLDELEKAV
HDETDQQDCPPACKLGRDQIKVIVPEKAGDDKMEKRRNFRRELIKSLVPE
KAGDDKMEKRRNFRRELIKSLEKGAKDIEKLEKAIGEFPPACKLGRDQIK
VMWSTMQAEKHKKSSCSTMTRCLCMEHIKDPFEVQDFFDGIVEAVGDVSM
RRGSCPMCCISIQIRSKKPLVRFTEEVTRAEETDHDWSDFQFRGMLFEMF
PDNWVSVENRVYNNKTLAVSTGAKAALSMVQKGTTLAKLSVEDVCGSNVM
RPWPLYEMAISRSHQERALLAAKQYLDVALGQLFRNQCEARFSEENPILT
RIMISAAQMIPGGKCLLDDTMEALPRSRAETHVVGCLVSYESPGSRVLAE
MLRTWDSISWNGDIASYLTSVFHEEFSHGALNYYYNSERSTAVKVEAIQG
TLHVTSLKFKGGRRNNLNKGYGEGCDVVQPVAIGESQSLRR*

spliced messenger RNA

>Ggra5869.t1 ID=Ggra5869.t1|Name=Ggra5869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000068_pilon:372712..374787+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCAAGAAGTAGTACGTATGTGTGACATCGTTAAGGCCTTCCCGAG
TATTAATCATGTCTTAGAATTGTACTTTCTGCTGAACTCTGAACCCAAGC
TCTGGGGATGTGGCAAACCATTACAGCTACCAGTAGCGGTCCGTACAAGT
GACAACCTCAGAGACGGAGTTGATATCGATACAGTTTCGTTACGAGATGT
GGCTATAAATGAGAGAGAGAGAGTTGATATCGATACAGTTTCGTTACGAA
TCACCTGCCATGATAACCGTGTCATTACGTGCTCCGATCCGAACAGTGGC
ACAACTAATGCAGTGATGTTTAGTACCTCCTTCGTCGACCTACAGAATTT
ATTTCTTAGACCCATGCAACGATCACCTTCTAACCAACAGAAGGCATGCA
GCATGAATAGCATGATTGATATGGGGGGAAATCTCGACTTATGGATAAAA
GGTTATGTGCTCTGTCAGGAAGATCAATCAAAGGCGATCCGCTTACGATT
ACTCAAAGCTGCTGCACACTTCCGAAAGAAAGGCTACATTCCCAGTCTCA
GTCGTGGACTAGATATAATTATTATCAAAGCTGGGAAGCAAACAACGTGG
TTTCATTTGGATGAATCCCTCCCGACAGTACTGCTTCCAAATACTCCCGG
GCTCCCTTTCCTCAACTCCGATATACTTCGCATCGCACAGGAAGGCCACA
GCCAATTTCGTCGTTATCTAACAGATTTAGACGAACTAGAAAAAGCGGTA
CATGATGAAACGGACCAACAAGACTGCCCACCTGCGTGCAAACTCGGCCG
GGACCAGATTAAAGTCATAGTCCCAGAAAAAGCGGGAGATGATAAAATGG
AGAAGCGACGAAACTTCAGGCGGGAACTTATAAAGTCGTTAGTCCCAGAA
AAAGCGGGAGATGATAAAATGGAGAAGCGACGAAACTTCAGGCGGGAACT
TATAAAGTCGTTAGAAAAAGGAGCTAAAGATATTGAAAAATTAGAAAAAG
CGATTGGGGAGTTCCCACCTGCGTGCAAACTCGGCCGGGACCAGATTAAA
GTCATGTGGTCTACAATGCAAGCTGAAAAACACAAAAAAAGTTCATGTTC
AACAATGACACGGTGCCTGTGCATGGAGCACATCAAGGATCCGTTTGAAG
TCCAGGATTTCTTTGACGGCATTGTGGAGGCCGTCGGAGACGTTTCTATG
AGGAGAGGGAGCTGCCCGATGTGCTGCATTTCTATTCAGATTAGATCGAA
GAAGCCTCTGGTACGATTCACGGAAGAGGTAACTAGGGCTGAGGAGACTG
ATCATGATTGGTCGGACTTTCAGTTCAGGGGCATGCTGTTCGAGATGTTC
CCCGATAATTGGGTATCAGTAGAGAACAGAGTGTACAACAACAAGACTCT
TGCTGTTTCAACTGGAGCGAAAGCGGCATTGAGCATGGTACAGAAAGGAA
CTACTTTAGCTAAGCTCAGCGTAGAGGATGTCTGCGGTTCCAACGTCATG
AGACCCTGGCCATTATACGAGATGGCAATATCTCGTAGCCACCAAGAAAG
AGCGCTTCTCGCAGCGAAGCAATATCTGGACGTTGCACTTGGACAGCTGT
TCCGCAATCAGTGCGAAGCGCGATTTAGTGAAGAAAACCCAATTCTCACA
CGAATCATGATTAGTGCTGCTCAGATGATTCCTGGGGGTAAATGTCTCCT
AGACGATACTATGGAAGCTTTGCCGCGCTCGAGAGCAGAGACTCATGTCG
TGGGTTGCTTGGTGAGCTACGAAAGCCCTGGCTCGAGAGTTCTGGCGGAG
ATGTTGCGGACGTGGGACTCTATATCGTGGAATGGGGACATAGCTTCCTA
TTTGACTTCTGTGTTCCACGAAGAGTTCAGTCATGGGGCATTGAACTACT
ATTACAACTCGGAGAGATCGACGGCGGTTAAGGTAGAGGCGATCCAAGGT
ACTCTCCATGTGACCAGTCTAAAGTTCAAAGGCGGCCGGAGAAACAACTT
GAATAAGGGCTATGGGGAAGGGTGCGATGTAGTGCAACCGGTTGCAATAG
GCGAATCACAATCGTTGCGAAGGTAA

protein sequence of Ggra5869.t1

>Ggra5869.t1 ID=Ggra5869.t1|Name=Ggra5869.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=692bp
MNQEVVRMCDIVKAFPSINHVLELYFLLNSEPKLWGCGKPLQLPVAVRTS
DNLRDGVDIDTVSLRDVAINERERVDIDTVSLRITCHDNRVITCSDPNSG
TTNAVMFSTSFVDLQNLFLRPMQRSPSNQQKACSMNSMIDMGGNLDLWIK
GYVLCQEDQSKAIRLRLLKAAAHFRKKGYIPSLSRGLDIIIIKAGKQTTW
FHLDESLPTVLLPNTPGLPFLNSDILRIAQEGHSQFRRYLTDLDELEKAV
HDETDQQDCPPACKLGRDQIKVIVPEKAGDDKMEKRRNFRRELIKSLVPE
KAGDDKMEKRRNFRRELIKSLEKGAKDIEKLEKAIGEFPPACKLGRDQIK
VMWSTMQAEKHKKSSCSTMTRCLCMEHIKDPFEVQDFFDGIVEAVGDVSM
RRGSCPMCCISIQIRSKKPLVRFTEEVTRAEETDHDWSDFQFRGMLFEMF
PDNWVSVENRVYNNKTLAVSTGAKAALSMVQKGTTLAKLSVEDVCGSNVM
RPWPLYEMAISRSHQERALLAAKQYLDVALGQLFRNQCEARFSEENPILT
RIMISAAQMIPGGKCLLDDTMEALPRSRAETHVVGCLVSYESPGSRVLAE
MLRTWDSISWNGDIASYLTSVFHEEFSHGALNYYYNSERSTAVKVEAIQG
TLHVTSLKFKGGRRNNLNKGYGEGCDVVQPVAIGESQSLRR*

mRNA from alignment at tig00000068_pilon:372712..374787+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5869.t1 ID=Ggra5869.t1|Name=Ggra5869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000068_pilon:372712..374787+ (Gracilaria gracilis GNS1m male)
ATGAATCAAGAAGTAGTACGTATGTGTGACATCGTTAAGGCCTTCCCGAG
TATTAATCATGTCTTAGAATTGTACTTTCTGCTGAACTCTGAACCCAAGC
TCTGGGGATGTGGCAAACCATTACAGCTACCAGTAGCGGTCCGTACAAGT
GACAACCTCAGAGACGGAGTTGATATCGATACAGTTTCGTTACGAGATGT
GGCTATAAATGAGAGAGAGAGAGTTGATATCGATACAGTTTCGTTACGAA
TCACCTGCCATGATAACCGTGTCATTACGTGCTCCGATCCGAACAGTGGC
ACAACTAATGCAGTGATGTTTAGTACCTCCTTCGTCGACCTACAGAATTT
ATTTCTTAGACCCATGCAACGATCACCTTCTAACCAACAGAAGGCATGCA
GCATGAATAGCATGATTGATATGGGGGGAAATCTCGACTTATGGATAAAA
GGTTATGTGCTCTGTCAGGAAGATCAATCAAAGGCGATCCGCTTACGATT
ACTCAAAGCTGCTGCACACTTCCGAAAGAAAGGCTACATTCCCAGTCTCA
GTCGTGGACTAGATATAATTATTATCAAAGCTGGGAAGCAAACAACGTGG
TTTCATTTGGATGAATCCCTCCCGACAGTACTGCTTCCAAATACTCCCGG
GCTCCCTTTCCTCAACTCCGATATACTTCGCATCGCACAGGAAGGCCACA
GCCAATTTCGTCGTTATCTAACAGATTTAGACGAACTAGAAAAAGCGGTA
CATGATGAAACGGACCAACAAGACTGCCCACCTGCGTGCAAACTCGGCCG
GGACCAGATTAAAGTCATAGTCCCAGAAAAAGCGGGAGATGATAAAATGG
AGAAGCGACGAAACTTCAGGCGGGAACTTATAAAGTCGTTAGTCCCAGAA
AAAGCGGGAGATGATAAAATGGAGAAGCGACGAAACTTCAGGCGGGAACT
TATAAAGTCGTTAGAAAAAGGAGCTAAAGATATTGAAAAATTAGAAAAAG
CGATTGGGGAGTTCCCACCTGCGTGCAAACTCGGCCGGGACCAGATTAAA
GTCATGTGGTCTACAATGCAAGCTGAAAAACACAAAAAAAGTTCATGTTC
AACAATGACACGGTGCCTGTGCATGGAGCACATCAAGGATCCGTTTGAAG
TCCAGGATTTCTTTGACGGCATTGTGGAGGCCGTCGGAGACGTTTCTATG
AGGAGAGGGAGCTGCCCGATGTGCTGCATTTCTATTCAGATTAGATCGAA
GAAGCCTCTGGTACGATTCACGGAAGAGGTAACTAGGGCTGAGGAGACTG
ATCATGATTGGTCGGACTTTCAGTTCAGGGGCATGCTGTTCGAGATGTTC
CCCGATAATTGGGTATCAGTAGAGAACAGAGTGTACAACAACAAGACTCT
TGCTGTTTCAACTGGAGCGAAAGCGGCATTGAGCATGGTACAGAAAGGAA
CTACTTTAGCTAAGCTCAGCGTAGAGGATGTCTGCGGTTCCAACGTCATG
AGACCCTGGCCATTATACGAGATGGCAATATCTCGTAGCCACCAAGAAAG
AGCGCTTCTCGCAGCGAAGCAATATCTGGACGTTGCACTTGGACAGCTGT
TCCGCAATCAGTGCGAAGCGCGATTTAGTGAAGAAAACCCAATTCTCACA
CGAATCATGATTAGTGCTGCTCAGATGATTCCTGGGGGTAAATGTCTCCT
AGACGATACTATGGAAGCTTTGCCGCGCTCGAGAGCAGAGACTCATGTCG
TGGGTTGCTTGGTGAGCTACGAAAGCCCTGGCTCGAGAGTTCTGGCGGAG
ATGTTGCGGACGTGGGACTCTATATCGTGGAATGGGGACATAGCTTCCTA
TTTGACTTCTGTGTTCCACGAAGAGTTCAGTCATGGGGCATTGAACTACT
ATTACAACTCGGAGAGATCGACGGCGGTTAAGGTAGAGGCGATCCAAGGT
ACTCTCCATGTGACCAGTCTAAAGTTCAAAGGCGGCCGGAGAAACAACTT
GAATAAGGGCTATGGGGAAGGGTGCGATGTAGTGCAACCGGTTGCAATAG
GCGAATCACAATCGTTGCGAAGGTAA

Coding sequence (CDS) from alignment at tig00000068_pilon:372712..374787+

>Ggra5869.t1 ID=Ggra5869.t1|Name=Ggra5869.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2076bp|location=Sequence derived from alignment at tig00000068_pilon:372712..374787+ (Gracilaria gracilis GNS1m male)
ATGAATCAAGAAGTAGTACGTATGTGTGACATCGTTAAGGCCTTCCCGAG
TATTAATCATGTCTTAGAATTGTACTTTCTGCTGAACTCTGAACCCAAGC
TCTGGGGATGTGGCAAACCATTACAGCTACCAGTAGCGGTCCGTACAAGT
GACAACCTCAGAGACGGAGTTGATATCGATACAGTTTCGTTACGAGATGT
GGCTATAAATGAGAGAGAGAGAGTTGATATCGATACAGTTTCGTTACGAA
TCACCTGCCATGATAACCGTGTCATTACGTGCTCCGATCCGAACAGTGGC
ACAACTAATGCAGTGATGTTTAGTACCTCCTTCGTCGACCTACAGAATTT
ATTTCTTAGACCCATGCAACGATCACCTTCTAACCAACAGAAGGCATGCA
GCATGAATAGCATGATTGATATGGGGGGAAATCTCGACTTATGGATAAAA
GGTTATGTGCTCTGTCAGGAAGATCAATCAAAGGCGATCCGCTTACGATT
ACTCAAAGCTGCTGCACACTTCCGAAAGAAAGGCTACATTCCCAGTCTCA
GTCGTGGACTAGATATAATTATTATCAAAGCTGGGAAGCAAACAACGTGG
TTTCATTTGGATGAATCCCTCCCGACAGTACTGCTTCCAAATACTCCCGG
GCTCCCTTTCCTCAACTCCGATATACTTCGCATCGCACAGGAAGGCCACA
GCCAATTTCGTCGTTATCTAACAGATTTAGACGAACTAGAAAAAGCGGTA
CATGATGAAACGGACCAACAAGACTGCCCACCTGCGTGCAAACTCGGCCG
GGACCAGATTAAAGTCATAGTCCCAGAAAAAGCGGGAGATGATAAAATGG
AGAAGCGACGAAACTTCAGGCGGGAACTTATAAAGTCGTTAGTCCCAGAA
AAAGCGGGAGATGATAAAATGGAGAAGCGACGAAACTTCAGGCGGGAACT
TATAAAGTCGTTAGAAAAAGGAGCTAAAGATATTGAAAAATTAGAAAAAG
CGATTGGGGAGTTCCCACCTGCGTGCAAACTCGGCCGGGACCAGATTAAA
GTCATGTGGTCTACAATGCAAGCTGAAAAACACAAAAAAAGTTCATGTTC
AACAATGACACGGTGCCTGTGCATGGAGCACATCAAGGATCCGTTTGAAG
TCCAGGATTTCTTTGACGGCATTGTGGAGGCCGTCGGAGACGTTTCTATG
AGGAGAGGGAGCTGCCCGATGTGCTGCATTTCTATTCAGATTAGATCGAA
GAAGCCTCTGGTACGATTCACGGAAGAGGTAACTAGGGCTGAGGAGACTG
ATCATGATTGGTCGGACTTTCAGTTCAGGGGCATGCTGTTCGAGATGTTC
CCCGATAATTGGGTATCAGTAGAGAACAGAGTGTACAACAACAAGACTCT
TGCTGTTTCAACTGGAGCGAAAGCGGCATTGAGCATGGTACAGAAAGGAA
CTACTTTAGCTAAGCTCAGCGTAGAGGATGTCTGCGGTTCCAACGTCATG
AGACCCTGGCCATTATACGAGATGGCAATATCTCGTAGCCACCAAGAAAG
AGCGCTTCTCGCAGCGAAGCAATATCTGGACGTTGCACTTGGACAGCTGT
TCCGCAATCAGTGCGAAGCGCGATTTAGTGAAGAAAACCCAATTCTCACA
CGAATCATGATTAGTGCTGCTCAGATGATTCCTGGGGGTAAATGTCTCCT
AGACGATACTATGGAAGCTTTGCCGCGCTCGAGAGCAGAGACTCATGTCG
TGGGTTGCTTGGTGAGCTACGAAAGCCCTGGCTCGAGAGTTCTGGCGGAG
ATGTTGCGGACGTGGGACTCTATATCGTGGAATGGGGACATAGCTTCCTA
TTTGACTTCTGTGTTCCACGAAGAGTTCAGTCATGGGGCATTGAACTACT
ATTACAACTCGGAGAGATCGACGGCGGTTAAGGTAGAGGCGATCCAAGGT
ACTCTCCATGTGACCAGTCTAAAGTTCAAAGGCGGCCGGAGAAACAACTT
GAATAAGGGCTATGGGGAAGGGTGCGATGTAGTGCAACCGGTTGCAATAG
GCGAATCACAATCGTTGCGAAGGTAA