Ggra5867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5867.t1
Unique NameGgra5867.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:293089..294090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ16277
PFAMsDUF2363
Max annot lvl35493|Streptophyta
Evalue3.7e-33
EggNOG OGsCOG3823@1|root,KOG4508@2759|Eukaryota,37NC9@33090|Viridiplantae,3G829@35493|Streptophyta
DescriptionCCR4-NOT transcription complex subunit
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5867Ggra5867Gracilaria gracilis GNS1m malegenetig00000068_pilon 293089..294090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5867.t1Ggra5867.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 293089..294090 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5867.t1.start1Ggra5867.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 293089..293091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5867.t1.CDS1Ggra5867.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 293089..293200 +
Ggra5867.t1.CDS2Ggra5867.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000068_pilon 293369..293715 +
Ggra5867.t1.CDS3Ggra5867.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000068_pilon 293857..293933 +
Ggra5867.t1.CDS4Ggra5867.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000068_pilon 294045..294090 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5867.t1.exon1Ggra5867.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 293089..293200 +
Ggra5867.t1.exon2Ggra5867.t1.exon2Gracilaria gracilis GNS1m maleexontig00000068_pilon 293369..293715 +
Ggra5867.t1.exon3Ggra5867.t1.exon3Gracilaria gracilis GNS1m maleexontig00000068_pilon 293857..293933 +
Ggra5867.t1.exon4Ggra5867.t1.exon4Gracilaria gracilis GNS1m maleexontig00000068_pilon 294045..294090 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5867.t1.intron1Ggra5867.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000068_pilon 293201..293368 +
Ggra5867.t1.intron2Ggra5867.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000068_pilon 293716..293856 +
Ggra5867.t1.intron3Ggra5867.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000068_pilon 293934..294044 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5867.t1.stop1Ggra5867.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 294088..294090 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5867.t1 ID=Ggra5867.t1|Name=Ggra5867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MALYVALEDAIRSGESVAAPNISTLRHMWAARHPETSESKKLRWIDPEPL
HEIIWGPEMGMKGERGAELREIISKAIKSLIPEGQRMKVRQMLNDDPKLV
HLSGITPQKLPDLVNNNAPLATDILLKLMSSTQMPKYLDALVNMDMNLQS
MDIRLIKNKNIDLQDLLVEVQGFCMGYCRIREVADLYRSLQAL*
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spliced messenger RNA

>Ggra5867.t1 ID=Ggra5867.t1|Name=Ggra5867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000068_pilon:293089..294090+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTGTACGTTGCGCTAGAAGACGCCATTCGCAGTGGTGAATCGGT
CGCCGCCCCAAACATTTCTACTTTGCGTCATATGTGGGCTGCAAGGCACC
CTGAAACCTCAGagagtaAGAAGTTGCGTTGGATTGATCCTGAGCCACTG
CATGAGATTATCTGGGGTCCGGAAATGGGAATGAAAGGCGAACGTGGGGC
AGAGCTGCGCGAAATCATCTCAAAGGCTATTAAAAGCCTAATACCAGAAG
GGCAGCGAATGAAAGTGCGTCAAATGCTGAATGATGATCCCAAGCTCGTT
CATCTCTCTGGAATTACCCCACAGAAACTACCAGACCTGGTCAATAACAA
CGCACCACTCGCTACGGACATCTTACTGAAGTTGATGTCCTCCACGCAGA
TGCCAAAGTACTTAGATGCACTCGTAAACATGGATATGAATCTGCAATCG
ATGGATATTCGCCTCATCAAGAACAAAAACATAGACTTGCAAGACTTATT
GGTGGAGGTCCAAGGGTTTTGTATGGGTTACTGCAGAATTCGTGAGGTTG
CCGACCTATACAGATCTCTGCAAGCTCTGTGA
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protein sequence of Ggra5867.t1

>Ggra5867.t1 ID=Ggra5867.t1|Name=Ggra5867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MALYVALEDAIRSGESVAAPNISTLRHMWAARHPETSESKKLRWIDPEPL
HEIIWGPEMGMKGERGAELREIISKAIKSLIPEGQRMKVRQMLNDDPKLV
HLSGITPQKLPDLVNNNAPLATDILLKLMSSTQMPKYLDALVNMDMNLQS
MDIRLIKNKNIDLQDLLVEVQGFCMGYCRIREVADLYRSLQAL*
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mRNA from alignment at tig00000068_pilon:293089..294090+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5867.t1 ID=Ggra5867.t1|Name=Ggra5867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000068_pilon:293089..294090+ (Gracilaria gracilis GNS1m male)
ATGGCCCTGTACGTTGCGCTAGAAGACGCCATTCGCAGTGGTGAATCGGT
CGCCGCCCCAAACATTTCTACTTTGCGTCATATGTGGGCTGCAAGGCACC
CTGAAACCTCAGGTAACTCTTATGGTTTAAAATccattagcgctgttgta
ccggatcctgatcggtttgcaattctagattctgggcgacTTGTCGAAGA
ACTTGGCTCAGTGGTTGcactggaagattttacaccaacttttgttagaa
tacctcctccattccttcccattgagctagagagtaAGAAGTTGCGTTGG
ATTGATCCTGAGCCACTGCATGAGATTATCTGGGGTCCGGAAATGGGAAT
GAAAGGCGAACGTGGGGCAGAGCTGCGCGAAATCATCTCAAAGGCTATTA
AAAGCCTAATACCAGAAGGGCAGCGAATGAAAGTGCGTCAAATGCTGAAT
GATGATCCCAAGCTCGTTCATCTCTCTGGAATTACCCCACAGAAACTACC
AGACCTGGTCAATAACAACGCACCACTCGCTACGGACATCTTACTGAAGT
TGATGTCCTCCACGCAGATGCCAAAGTACTTAGATGCACTCGTAAACATG
GATATGAATCTGCAATCGATGGATATTGTGAGCCGTCTTTCAAACACTGT
GCAGGTGCCAAGGGAATTCATGCATGCCTATataagcaattgtatgcgct
cttgtgatgatataccggacaagcctacacaagagcgaAGCGTTCGTTAT
TTCTGTGTGTTCCTGAAGCGCCTCATCAAGAACAAAAACATAGACTTGCA
AGACTTATTGGTGGAGGTCCAAGGGTTTTGTATGGGTTACTGCAGGTAAG
TACTGGTTTTCAATGTTCAAGATGATACAAATGTTTTTTTGACCTTGGAC
TGACACTCTTGTTCATCAAATGCTGATATGCGATTCAATGCCCTTGTGTG
ACACAGAATTCGTGAGGTTGCCGACCTATACAGATCTCTGCAAGCTCTGT
GA
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Coding sequence (CDS) from alignment at tig00000068_pilon:293089..294090+

>Ggra5867.t1 ID=Ggra5867.t1|Name=Ggra5867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000068_pilon:293089..294090+ (Gracilaria gracilis GNS1m male)
ATGGCCCTGTACGTTGCGCTAGAAGACGCCATTCGCAGTGGTGAATCGGT
CGCCGCCCCAAACATTTCTACTTTGCGTCATATGTGGGCTGCAAGGCACC
CTGAAACCTCAGagagtaAGAAGTTGCGTTGGATTGATCCTGAGCCACTG
CATGAGATTATCTGGGGTCCGGAAATGGGAATGAAAGGCGAACGTGGGGC
AGAGCTGCGCGAAATCATCTCAAAGGCTATTAAAAGCCTAATACCAGAAG
GGCAGCGAATGAAAGTGCGTCAAATGCTGAATGATGATCCCAAGCTCGTT
CATCTCTCTGGAATTACCCCACAGAAACTACCAGACCTGGTCAATAACAA
CGCACCACTCGCTACGGACATCTTACTGAAGTTGATGTCCTCCACGCAGA
TGCCAAAGTACTTAGATGCACTCGTAAACATGGATATGAATCTGCAATCG
ATGGATATTCGCCTCATCAAGAACAAAAACATAGACTTGCAAGACTTATT
GGTGGAGGTCCAAGGGTTTTGTATGGGTTACTGCAGAATTCGTGAGGTTG
CCGACCTATACAGATCTCTGCAAGCTCTGTGA
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