Ggra5866.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5866.t1
Unique NameGgra5866.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:198529..199701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708670.1
Preferred namePSMD13
PFAMsPCI
Max annot lvl2759|Eukaryota
KEGG koko:K03039
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000280,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007049,GO:0007088,GO:0007127,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0022607,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051321,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061982,GO:0062033,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903046,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue1.44e-75
EggNOG OGsKOG2908@1|root,KOG2908@2759|Eukaryota
Descriptionproteasome assembly
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5866Ggra5866Gracilaria gracilis GNS1m malegenetig00000068_pilon 198529..199701 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5866.t1.start1Ggra5866.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 198529..198531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5866.t1.CDS1Ggra5866.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 198529..199701 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5866.t1.exon1Ggra5866.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 198529..199701 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5866.t1.stop1Ggra5866.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 199699..199701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5866.t1Ggra5866.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 198529..199701 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5866.t1 ID=Ggra5866.t1|Name=Ggra5866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MATAVAAEYIQQRVASAPDESAKAALTSLMHFHEEKLWHQLTEYVKILVA
DPKVNDKIGLYSSFLKHFEAKLNPISLVQILVAIVRSELHQTPSDALAFL
SPLLVADGGKGTVVTESDEAHVLLLSHVAVLHMKASDNAACKKDVEAARV
LVEAAHDMNPLVHSAFYRAAAEYHKVVGTASDFFRNALQFLAYTPPNTLD
VSAQHRWAFDIGIAALVGNDIYNFGEVLSHSIVHSLRGSENEWLLLLLEA
FNSGDLEKFDSVCQQSSTQMNAQPVLVANEEFLKQKVTILALMELCFSRS
LEHSIPFADVQKTCRLPLKEVEYLLMRSMSLGLISGEIDNVDQCVTISRV
QPRVLGRETIGEMAKRLSKWSQHVTDTVAFLNKTTVGIVE*
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spliced messenger RNA

>Ggra5866.t1 ID=Ggra5866.t1|Name=Ggra5866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000068_pilon:198529..199701+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCGCAGTTGCTGCCGAGTACATCCAACAGCGCGTCGCATCTGC
CCCCGATGAATCCGCAAAAGCCGCGCTCACCTCTTTGATGCACTTCCACG
AGGAGAAGCTTTGGCACCAGCTGACCGAGTATGTGAAAATTCTTGTCGCC
GATCCCAAAGTCAACGATAAGATTGGCTTGTACAGTTCCTTTCTCAAGCA
TTTTGAAGCCAAGTTGAACCCTATATCGCTTGTGCAGATCCTCGTTGCAA
TTGTTCGCTCAGAGTTACATCAAACCCCATCTGATGCTCTAGCGTTTCTT
TCTCCCTTGCTTGTTGCTGATGGTGGCAAAGGTACCGTCGTAACCGAAAG
TGATGAAGCCCATGTGCTCTTGCTCTCACATGTCGCGGTACTCCACATGA
AGGCCAGCGATAATGCAGCGTGTAAGAAGGATGTTGAAGCTGCCCGCGTT
TTGGTTGAAGCTGCGCATGACATGAATCCTCTTGTTCATTCTGCGTTTTA
TCGTGCGGCTGCCGAGTATCATAAGGTTGTCGGTACCGCCTCTGATTTCT
TCCGAAACGCACTTCAGTTCCTTGCATACACCCCGCCAAACACTCTGGAT
GTATCGGCTCAGCATAGATGGGCCTTTGATATTGGTATAGCAGCCTTGGT
TGGGAACGATATTTACAACTTTGGTGAGGTTCTATCCCATTCCATTGTGC
ATTCTCTACGGGGCTCTGAGAATGAATGGCTTTTGCTCCTTCTCGAAGCA
TTCAACAGCGGAGATCTGGAGAAGTTCGACTCTGTTTGTCAACAATCCTC
AACACAGATGAATGCTCAACCTGTGCTTGTGGCTAATGAAGAGTTTTTGA
AACAGAAAGTTACCATCTTGGCTCTCATGGAATTATGCTTCTCTAGGTCT
CTAGAACACTCAATTCCATTCGCTGATGTTCAAAAAACATGCCGTTTACC
ACTGAAAGAAGTCGAATACCTGCTCATGCGATCGATGAGTCTGGGGCTAA
TATCCGGAGAGATTGATAATGTTGACCAATGCGTCACAATCTCTCGTGTT
CAGCCAAGGGTGTTAGGAAGGGAGACTATCGGTGAAATGGCCAAGCGCTT
GTCGAAATGGAGTCAACATGTCACGGACACCGTCGCGTTTTTGAATAAGA
CCACAGTAGGTATTGTGGAATAG
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protein sequence of Ggra5866.t1

>Ggra5866.t1 ID=Ggra5866.t1|Name=Ggra5866.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MATAVAAEYIQQRVASAPDESAKAALTSLMHFHEEKLWHQLTEYVKILVA
DPKVNDKIGLYSSFLKHFEAKLNPISLVQILVAIVRSELHQTPSDALAFL
SPLLVADGGKGTVVTESDEAHVLLLSHVAVLHMKASDNAACKKDVEAARV
LVEAAHDMNPLVHSAFYRAAAEYHKVVGTASDFFRNALQFLAYTPPNTLD
VSAQHRWAFDIGIAALVGNDIYNFGEVLSHSIVHSLRGSENEWLLLLLEA
FNSGDLEKFDSVCQQSSTQMNAQPVLVANEEFLKQKVTILALMELCFSRS
LEHSIPFADVQKTCRLPLKEVEYLLMRSMSLGLISGEIDNVDQCVTISRV
QPRVLGRETIGEMAKRLSKWSQHVTDTVAFLNKTTVGIVE*
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mRNA from alignment at tig00000068_pilon:198529..199701+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5866.t1 ID=Ggra5866.t1|Name=Ggra5866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000068_pilon:198529..199701+ (Gracilaria gracilis GNS1m male)
ATGGCTACCGCAGTTGCTGCCGAGTACATCCAACAGCGCGTCGCATCTGC
CCCCGATGAATCCGCAAAAGCCGCGCTCACCTCTTTGATGCACTTCCACG
AGGAGAAGCTTTGGCACCAGCTGACCGAGTATGTGAAAATTCTTGTCGCC
GATCCCAAAGTCAACGATAAGATTGGCTTGTACAGTTCCTTTCTCAAGCA
TTTTGAAGCCAAGTTGAACCCTATATCGCTTGTGCAGATCCTCGTTGCAA
TTGTTCGCTCAGAGTTACATCAAACCCCATCTGATGCTCTAGCGTTTCTT
TCTCCCTTGCTTGTTGCTGATGGTGGCAAAGGTACCGTCGTAACCGAAAG
TGATGAAGCCCATGTGCTCTTGCTCTCACATGTCGCGGTACTCCACATGA
AGGCCAGCGATAATGCAGCGTGTAAGAAGGATGTTGAAGCTGCCCGCGTT
TTGGTTGAAGCTGCGCATGACATGAATCCTCTTGTTCATTCTGCGTTTTA
TCGTGCGGCTGCCGAGTATCATAAGGTTGTCGGTACCGCCTCTGATTTCT
TCCGAAACGCACTTCAGTTCCTTGCATACACCCCGCCAAACACTCTGGAT
GTATCGGCTCAGCATAGATGGGCCTTTGATATTGGTATAGCAGCCTTGGT
TGGGAACGATATTTACAACTTTGGTGAGGTTCTATCCCATTCCATTGTGC
ATTCTCTACGGGGCTCTGAGAATGAATGGCTTTTGCTCCTTCTCGAAGCA
TTCAACAGCGGAGATCTGGAGAAGTTCGACTCTGTTTGTCAACAATCCTC
AACACAGATGAATGCTCAACCTGTGCTTGTGGCTAATGAAGAGTTTTTGA
AACAGAAAGTTACCATCTTGGCTCTCATGGAATTATGCTTCTCTAGGTCT
CTAGAACACTCAATTCCATTCGCTGATGTTCAAAAAACATGCCGTTTACC
ACTGAAAGAAGTCGAATACCTGCTCATGCGATCGATGAGTCTGGGGCTAA
TATCCGGAGAGATTGATAATGTTGACCAATGCGTCACAATCTCTCGTGTT
CAGCCAAGGGTGTTAGGAAGGGAGACTATCGGTGAAATGGCCAAGCGCTT
GTCGAAATGGAGTCAACATGTCACGGACACCGTCGCGTTTTTGAATAAGA
CCACAGTAGGTATTGTGGAATAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:198529..199701+

>Ggra5866.t1 ID=Ggra5866.t1|Name=Ggra5866.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000068_pilon:198529..199701+ (Gracilaria gracilis GNS1m male)
ATGGCTACCGCAGTTGCTGCCGAGTACATCCAACAGCGCGTCGCATCTGC
CCCCGATGAATCCGCAAAAGCCGCGCTCACCTCTTTGATGCACTTCCACG
AGGAGAAGCTTTGGCACCAGCTGACCGAGTATGTGAAAATTCTTGTCGCC
GATCCCAAAGTCAACGATAAGATTGGCTTGTACAGTTCCTTTCTCAAGCA
TTTTGAAGCCAAGTTGAACCCTATATCGCTTGTGCAGATCCTCGTTGCAA
TTGTTCGCTCAGAGTTACATCAAACCCCATCTGATGCTCTAGCGTTTCTT
TCTCCCTTGCTTGTTGCTGATGGTGGCAAAGGTACCGTCGTAACCGAAAG
TGATGAAGCCCATGTGCTCTTGCTCTCACATGTCGCGGTACTCCACATGA
AGGCCAGCGATAATGCAGCGTGTAAGAAGGATGTTGAAGCTGCCCGCGTT
TTGGTTGAAGCTGCGCATGACATGAATCCTCTTGTTCATTCTGCGTTTTA
TCGTGCGGCTGCCGAGTATCATAAGGTTGTCGGTACCGCCTCTGATTTCT
TCCGAAACGCACTTCAGTTCCTTGCATACACCCCGCCAAACACTCTGGAT
GTATCGGCTCAGCATAGATGGGCCTTTGATATTGGTATAGCAGCCTTGGT
TGGGAACGATATTTACAACTTTGGTGAGGTTCTATCCCATTCCATTGTGC
ATTCTCTACGGGGCTCTGAGAATGAATGGCTTTTGCTCCTTCTCGAAGCA
TTCAACAGCGGAGATCTGGAGAAGTTCGACTCTGTTTGTCAACAATCCTC
AACACAGATGAATGCTCAACCTGTGCTTGTGGCTAATGAAGAGTTTTTGA
AACAGAAAGTTACCATCTTGGCTCTCATGGAATTATGCTTCTCTAGGTCT
CTAGAACACTCAATTCCATTCGCTGATGTTCAAAAAACATGCCGTTTACC
ACTGAAAGAAGTCGAATACCTGCTCATGCGATCGATGAGTCTGGGGCTAA
TATCCGGAGAGATTGATAATGTTGACCAATGCGTCACAATCTCTCGTGTT
CAGCCAAGGGTGTTAGGAAGGGAGACTATCGGTGAAATGGCCAAGCGCTT
GTCGAAATGGAGTCAACATGTCACGGACACCGTCGCGTTTTTGAATAAGA
CCACAGTAGGTATTGTGGAATAG
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