Ggra5855.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5855.t1
Unique NameGgra5855.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:155469..156350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP09482
PFAMsGlutaredoxin
Max annot lvl3041|Chlorophyta
Evalue5.36e-42
EggNOG OGsCOG0278@1|root,KOG0911@2759|Eukaryota,37MIS@33090|Viridiplantae,34HR8@3041|Chlorophyta
DescriptionGlutaredoxin
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5855Ggra5855Gracilaria gracilis GNS1m malegenetig00000068_pilon 155469..156350 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5855.t1.start1Ggra5855.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 155469..155471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5855.t1.CDS1Ggra5855.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 155469..156350 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5855.t1.exon1Ggra5855.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 155469..156350 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5855.t1.stop1Ggra5855.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 156348..156350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5855.t1Ggra5855.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 155469..156350 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5855.t1 ID=Ggra5855.t1|Name=Ggra5855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MAPKLAAFTLSVPVAPSLRTAVVARTSPTHSLTVRARRCRRPTFAPPRLS
AQHFGNVEDLPAERVPTLVPQLPSHWGRPGVYGIYDSQNRLQYVAAVANV
RDAISNHVLFVQDAERCHFVRMLTVDDLQHKDALGDLAEQWVMTHAKHGP
GIPPGNSDEAPEWRLERKPEDIYFKDNAQQEMVIGEIEDIIRDNDIVLFM
KGTRRMPRCGFSANVVAMLQTMTDQFVCVDCLDEVRNMGLRGAIKDYSKW
PTIPQLYVRGEFVGGHDIVRDMMGNGELQTMLEMVAAERTTTL*
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spliced messenger RNA

>Ggra5855.t1 ID=Ggra5855.t1|Name=Ggra5855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000068_pilon:155469..156350+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAACTCGCCGCCTTCACGCTCTCCGTCCCCGTCGCCCCGTC
CCTCCGCACCGCCGTCGTCGCGCGAACTTCGCCCACGCACTCGCTCACAG
TGCGCGCACGCCGCTGTCGCCGCCCCACGTTCGCTCCGCCGCGCCTCAGC
GCGCAGCACTTTGGCAACGTGGAAGACCTTCCGGCAGAACGCGTCCCAAC
GCTAGTCCCTCAGCTCCCTTCTCACTGGGGCAGACCAGGCGTGTACGGCA
TCTACGACTCGCAAAACAGGCTGCAGTACGTCGCCGCCGTCGCCAACGTC
CGCGACGCAATCTCCAACCATGTGCTCTTCGTGCAGGACGCCGAGCGATG
TCACTTTGTGCGCATGTTGACCGTCGACGACCTGCAGCACAAGGACGCGC
TTGGCGATCTTGCCGAGCAGTGGGTCATGACGCACGCCAAGCACGGCCCG
GGCATTCCGCCGGGCAACTCCGACGAGGCGCCGGAATGGCGCCTGGAACG
AAAGCCGGAGGACATTTACTTCAAGGACAACGCGCAGCAAGAAATGGTGA
TCGGCGAGATTGAGGATATTATTCGCGACAATGACATCGTGCTGTTCATG
AAGGGCACCAGACGCATGCCGCGATGCGGCTTTTCGGCAAACGTTGTCGC
CATGTTGCAGACCATGACCGACCAATTCGTGTGCGTCGACTGCTTGGATG
AAGTAAGAAATATGGGCTTGAGAGGTGCTATCAAGGACTACTCCAAATGG
CCCACCATTCCGCAGCTTTACGTCAGAGGTGAGTTTGTGGGCGGCCATGA
CATCGTGCGCGACATGATGGGCAACGGCGAGTTGCAAACCATGTTGGAGA
TGGTCGCCGCGGAAAGAACCACCACTTTGTAG
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protein sequence of Ggra5855.t1

>Ggra5855.t1 ID=Ggra5855.t1|Name=Ggra5855.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MAPKLAAFTLSVPVAPSLRTAVVARTSPTHSLTVRARRCRRPTFAPPRLS
AQHFGNVEDLPAERVPTLVPQLPSHWGRPGVYGIYDSQNRLQYVAAVANV
RDAISNHVLFVQDAERCHFVRMLTVDDLQHKDALGDLAEQWVMTHAKHGP
GIPPGNSDEAPEWRLERKPEDIYFKDNAQQEMVIGEIEDIIRDNDIVLFM
KGTRRMPRCGFSANVVAMLQTMTDQFVCVDCLDEVRNMGLRGAIKDYSKW
PTIPQLYVRGEFVGGHDIVRDMMGNGELQTMLEMVAAERTTTL*
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mRNA from alignment at tig00000068_pilon:155469..156350+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5855.t1 ID=Ggra5855.t1|Name=Ggra5855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000068_pilon:155469..156350+ (Gracilaria gracilis GNS1m male)
ATGGCTCCCAAACTCGCCGCCTTCACGCTCTCCGTCCCCGTCGCCCCGTC
CCTCCGCACCGCCGTCGTCGCGCGAACTTCGCCCACGCACTCGCTCACAG
TGCGCGCACGCCGCTGTCGCCGCCCCACGTTCGCTCCGCCGCGCCTCAGC
GCGCAGCACTTTGGCAACGTGGAAGACCTTCCGGCAGAACGCGTCCCAAC
GCTAGTCCCTCAGCTCCCTTCTCACTGGGGCAGACCAGGCGTGTACGGCA
TCTACGACTCGCAAAACAGGCTGCAGTACGTCGCCGCCGTCGCCAACGTC
CGCGACGCAATCTCCAACCATGTGCTCTTCGTGCAGGACGCCGAGCGATG
TCACTTTGTGCGCATGTTGACCGTCGACGACCTGCAGCACAAGGACGCGC
TTGGCGATCTTGCCGAGCAGTGGGTCATGACGCACGCCAAGCACGGCCCG
GGCATTCCGCCGGGCAACTCCGACGAGGCGCCGGAATGGCGCCTGGAACG
AAAGCCGGAGGACATTTACTTCAAGGACAACGCGCAGCAAGAAATGGTGA
TCGGCGAGATTGAGGATATTATTCGCGACAATGACATCGTGCTGTTCATG
AAGGGCACCAGACGCATGCCGCGATGCGGCTTTTCGGCAAACGTTGTCGC
CATGTTGCAGACCATGACCGACCAATTCGTGTGCGTCGACTGCTTGGATG
AAGTAAGAAATATGGGCTTGAGAGGTGCTATCAAGGACTACTCCAAATGG
CCCACCATTCCGCAGCTTTACGTCAGAGGTGAGTTTGTGGGCGGCCATGA
CATCGTGCGCGACATGATGGGCAACGGCGAGTTGCAAACCATGTTGGAGA
TGGTCGCCGCGGAAAGAACCACCACTTTGTAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:155469..156350+

>Ggra5855.t1 ID=Ggra5855.t1|Name=Ggra5855.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000068_pilon:155469..156350+ (Gracilaria gracilis GNS1m male)
ATGGCTCCCAAACTCGCCGCCTTCACGCTCTCCGTCCCCGTCGCCCCGTC
CCTCCGCACCGCCGTCGTCGCGCGAACTTCGCCCACGCACTCGCTCACAG
TGCGCGCACGCCGCTGTCGCCGCCCCACGTTCGCTCCGCCGCGCCTCAGC
GCGCAGCACTTTGGCAACGTGGAAGACCTTCCGGCAGAACGCGTCCCAAC
GCTAGTCCCTCAGCTCCCTTCTCACTGGGGCAGACCAGGCGTGTACGGCA
TCTACGACTCGCAAAACAGGCTGCAGTACGTCGCCGCCGTCGCCAACGTC
CGCGACGCAATCTCCAACCATGTGCTCTTCGTGCAGGACGCCGAGCGATG
TCACTTTGTGCGCATGTTGACCGTCGACGACCTGCAGCACAAGGACGCGC
TTGGCGATCTTGCCGAGCAGTGGGTCATGACGCACGCCAAGCACGGCCCG
GGCATTCCGCCGGGCAACTCCGACGAGGCGCCGGAATGGCGCCTGGAACG
AAAGCCGGAGGACATTTACTTCAAGGACAACGCGCAGCAAGAAATGGTGA
TCGGCGAGATTGAGGATATTATTCGCGACAATGACATCGTGCTGTTCATG
AAGGGCACCAGACGCATGCCGCGATGCGGCTTTTCGGCAAACGTTGTCGC
CATGTTGCAGACCATGACCGACCAATTCGTGTGCGTCGACTGCTTGGATG
AAGTAAGAAATATGGGCTTGAGAGGTGCTATCAAGGACTACTCCAAATGG
CCCACCATTCCGCAGCTTTACGTCAGAGGTGAGTTTGTGGGCGGCCATGA
CATCGTGCGCGACATGATGGGCAACGGCGAGTTGCAAACCATGTTGGAGA
TGGTCGCCGCGGAAAGAACCACCACTTTGTAG
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