Ggra5827.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5827.t1
Unique NameGgra5827.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:409214..410377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5827Ggra5827Gracilaria gracilis GNS1m malegenetig00000935_pilon 409214..410377 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5827.t1.start1Ggra5827.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 409214..409216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5827.t1.CDS1Ggra5827.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 409214..410377 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5827.t1.exon1Ggra5827.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 409214..410377 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5827.t1.stop1Ggra5827.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 410375..410377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5827.t1Ggra5827.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 409214..410377 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5827.t1 ID=Ggra5827.t1|Name=Ggra5827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MHHKSYELTESVTPVRNSSAARQSQICVAPRVKLHPVKTTPVTRSVRTQP
FRVRIQPPSNQDEFVRRKLFPTVTPRKKKSHERITIKVNCGRERTQPLTV
NPLRGSSGSLTSFLRSSISQAEQRIQAFRAAVQVNKFTNRVLENNLIVRI
LRRDGDLFFVEQINKVAMKLPRLAVLVSTDALPFTATESETKERCMFIPY
PWHAHEVNMFRLNIADILVVPYRISITTQSEILPALQSQSLTQTLNESLM
RVASASNQLPHTHEDDRTDGGKSFHVLHTFSKLSPHIAVVNLDVYVDFCF
HQRGFAIIRDNIGELAILIAFNEANIEFRSGERHHIPNVHVVPQRITSDA
VLQIATLESNECYNRLRRCSQDTLFAFSTRSPDYPFE*
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spliced messenger RNA

>Ggra5827.t1 ID=Ggra5827.t1|Name=Ggra5827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000935_pilon:409214..410377+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCACAAATCCTACGAGCTGACCGAATCTGTAACTCCGGTTCGCAA
CTCCAGCGCCGCTCGGCAGTCGCAGATATGCGTAGCACCTCGAGTGAAGC
TCCATCCAGTGAAGACCACACCTGTGACCCGCTCCGTGCGAACCCAACCT
TTCCGCGTGCGAATTCAGCCGCCATCGAACCAAGATGAGTTCGTTCGCAG
AAAACTCTTTCCAACAGTCACACCAAGAAAGAAAAAGTCTCATGAACGAA
TCACAATTAAAGTCAACTGCGGAAGGGAACGCACGCAACCGTTAACTGTG
AACCCTTTACGGGGTTCTAGTGGCTCTCTTACTTCCTTTTTACGCTCCTC
TATATCGCAAGCAGAACAAAGAATTCAAGCATTTCGCGCTGCCGTGCAGG
TCAACAAGTTCACAAACAGAGTTTTGGAGAACAACCTGATTGTTCGGATT
CTCCGAAGGGACGGGGACCTCTTCTTCGTTGAGCAAATCAACAAAGTCGC
GATGAAGCTCCCCAGGCTCGCTGTCTTAGTATCTACAGACGCACTACCTT
TCACCGCAACGGAATCGGAAACGAAGGAAAGATGCATGTTCATACCCTAT
CCATGGCACGCTCATGAAGTGAACATGTTTCGTCTGAATATAGCAGATAT
TCTTGTCGTACCATACAGAATCAGCATCACAACCCAGAGTGAAATTCTAC
CCGCACTGCAATCACAATCCCTTACTCAAACTCTCAACGAATCTTTGATG
CGAGTGGCTTCGGCGTCAAATCAACTTCCTCACACACACGAAGATGATAG
AACAGACGGAGGGAAGAGTTTCCATGTACTGCACACATTCTCAAAACTAT
CACCCCACATCGCAGTCGTGAACTTGGATGTATACGTCGATTTCTGTTTT
CACCAGCGAGGTTTCGCTATCATTCGTGACAACATAGGAGAGCTTGCTAT
TCTGATAGCCTTCAATGAAGCAAACATCGAATTCAGAAGCGGAGAGAGGC
ATCACATCCCAAACGTTCATGTTGTCCCTCAACGGATAACGTCTGATGCA
GTGCTTCAAATTGCAACACTCGAGTCAAATGAATGTTACAATCGATTACG
ACGATGCTCGCAGGACACGCTCTTCGCTTTTTCTACACGAAGCCCAGACT
ACCCTTTCGAATAG
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protein sequence of Ggra5827.t1

>Ggra5827.t1 ID=Ggra5827.t1|Name=Ggra5827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MHHKSYELTESVTPVRNSSAARQSQICVAPRVKLHPVKTTPVTRSVRTQP
FRVRIQPPSNQDEFVRRKLFPTVTPRKKKSHERITIKVNCGRERTQPLTV
NPLRGSSGSLTSFLRSSISQAEQRIQAFRAAVQVNKFTNRVLENNLIVRI
LRRDGDLFFVEQINKVAMKLPRLAVLVSTDALPFTATESETKERCMFIPY
PWHAHEVNMFRLNIADILVVPYRISITTQSEILPALQSQSLTQTLNESLM
RVASASNQLPHTHEDDRTDGGKSFHVLHTFSKLSPHIAVVNLDVYVDFCF
HQRGFAIIRDNIGELAILIAFNEANIEFRSGERHHIPNVHVVPQRITSDA
VLQIATLESNECYNRLRRCSQDTLFAFSTRSPDYPFE*
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mRNA from alignment at tig00000935_pilon:409214..410377+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5827.t1 ID=Ggra5827.t1|Name=Ggra5827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000935_pilon:409214..410377+ (Gracilaria gracilis GNS1m male)
ATGCATCACAAATCCTACGAGCTGACCGAATCTGTAACTCCGGTTCGCAA
CTCCAGCGCCGCTCGGCAGTCGCAGATATGCGTAGCACCTCGAGTGAAGC
TCCATCCAGTGAAGACCACACCTGTGACCCGCTCCGTGCGAACCCAACCT
TTCCGCGTGCGAATTCAGCCGCCATCGAACCAAGATGAGTTCGTTCGCAG
AAAACTCTTTCCAACAGTCACACCAAGAAAGAAAAAGTCTCATGAACGAA
TCACAATTAAAGTCAACTGCGGAAGGGAACGCACGCAACCGTTAACTGTG
AACCCTTTACGGGGTTCTAGTGGCTCTCTTACTTCCTTTTTACGCTCCTC
TATATCGCAAGCAGAACAAAGAATTCAAGCATTTCGCGCTGCCGTGCAGG
TCAACAAGTTCACAAACAGAGTTTTGGAGAACAACCTGATTGTTCGGATT
CTCCGAAGGGACGGGGACCTCTTCTTCGTTGAGCAAATCAACAAAGTCGC
GATGAAGCTCCCCAGGCTCGCTGTCTTAGTATCTACAGACGCACTACCTT
TCACCGCAACGGAATCGGAAACGAAGGAAAGATGCATGTTCATACCCTAT
CCATGGCACGCTCATGAAGTGAACATGTTTCGTCTGAATATAGCAGATAT
TCTTGTCGTACCATACAGAATCAGCATCACAACCCAGAGTGAAATTCTAC
CCGCACTGCAATCACAATCCCTTACTCAAACTCTCAACGAATCTTTGATG
CGAGTGGCTTCGGCGTCAAATCAACTTCCTCACACACACGAAGATGATAG
AACAGACGGAGGGAAGAGTTTCCATGTACTGCACACATTCTCAAAACTAT
CACCCCACATCGCAGTCGTGAACTTGGATGTATACGTCGATTTCTGTTTT
CACCAGCGAGGTTTCGCTATCATTCGTGACAACATAGGAGAGCTTGCTAT
TCTGATAGCCTTCAATGAAGCAAACATCGAATTCAGAAGCGGAGAGAGGC
ATCACATCCCAAACGTTCATGTTGTCCCTCAACGGATAACGTCTGATGCA
GTGCTTCAAATTGCAACACTCGAGTCAAATGAATGTTACAATCGATTACG
ACGATGCTCGCAGGACACGCTCTTCGCTTTTTCTACACGAAGCCCAGACT
ACCCTTTCGAATAG
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Coding sequence (CDS) from alignment at tig00000935_pilon:409214..410377+

>Ggra5827.t1 ID=Ggra5827.t1|Name=Ggra5827.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000935_pilon:409214..410377+ (Gracilaria gracilis GNS1m male)
ATGCATCACAAATCCTACGAGCTGACCGAATCTGTAACTCCGGTTCGCAA
CTCCAGCGCCGCTCGGCAGTCGCAGATATGCGTAGCACCTCGAGTGAAGC
TCCATCCAGTGAAGACCACACCTGTGACCCGCTCCGTGCGAACCCAACCT
TTCCGCGTGCGAATTCAGCCGCCATCGAACCAAGATGAGTTCGTTCGCAG
AAAACTCTTTCCAACAGTCACACCAAGAAAGAAAAAGTCTCATGAACGAA
TCACAATTAAAGTCAACTGCGGAAGGGAACGCACGCAACCGTTAACTGTG
AACCCTTTACGGGGTTCTAGTGGCTCTCTTACTTCCTTTTTACGCTCCTC
TATATCGCAAGCAGAACAAAGAATTCAAGCATTTCGCGCTGCCGTGCAGG
TCAACAAGTTCACAAACAGAGTTTTGGAGAACAACCTGATTGTTCGGATT
CTCCGAAGGGACGGGGACCTCTTCTTCGTTGAGCAAATCAACAAAGTCGC
GATGAAGCTCCCCAGGCTCGCTGTCTTAGTATCTACAGACGCACTACCTT
TCACCGCAACGGAATCGGAAACGAAGGAAAGATGCATGTTCATACCCTAT
CCATGGCACGCTCATGAAGTGAACATGTTTCGTCTGAATATAGCAGATAT
TCTTGTCGTACCATACAGAATCAGCATCACAACCCAGAGTGAAATTCTAC
CCGCACTGCAATCACAATCCCTTACTCAAACTCTCAACGAATCTTTGATG
CGAGTGGCTTCGGCGTCAAATCAACTTCCTCACACACACGAAGATGATAG
AACAGACGGAGGGAAGAGTTTCCATGTACTGCACACATTCTCAAAACTAT
CACCCCACATCGCAGTCGTGAACTTGGATGTATACGTCGATTTCTGTTTT
CACCAGCGAGGTTTCGCTATCATTCGTGACAACATAGGAGAGCTTGCTAT
TCTGATAGCCTTCAATGAAGCAAACATCGAATTCAGAAGCGGAGAGAGGC
ATCACATCCCAAACGTTCATGTTGTCCCTCAACGGATAACGTCTGATGCA
GTGCTTCAAATTGCAACACTCGAGTCAAATGAATGTTACAATCGATTACG
ACGATGCTCGCAGGACACGCTCTTCGCTTTTTCTACACGAAGCCCAGACT
ACCCTTTCGAATAG
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