Ggra5806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5806.t1
Unique Name	Ggra5806.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	732

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000935_pilon	contig	tig00000935_pilon:357607..359802 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707597.1
Preferred name	UTP6
PFAMs	U3_assoc_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14557
KEGG Pathway	ko03008,map03008
GOs	GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	1.77e-30
EggNOG OGs	COG5191@1\|root,KOG2396@2759\|Eukaryota
Description	snoRNA binding
COG category	J
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5806	Ggra5806	Gracilaria gracilis GNS1m male	gene	tig00000935_pilon 357607..359802 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5806.t1.stop1	Ggra5806.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000935_pilon 357607..357609 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5806.t1.CDS1	Ggra5806.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000935_pilon 357607..359802 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5806.t1.exon1	Ggra5806.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000935_pilon 357607..359802 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5806.t1.start1	Ggra5806.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000935_pilon 359800..359802 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5806.t1	Ggra5806.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000935_pilon 357607..359802 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000935_pilon:357607..359802-
coding sequence from alignment at tig00000935_pilon:357607..359802-

mRNA sequence

>Ggra5806.t1 ID=Ggra5806.t1|Name=Ggra5806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp
MGGDKVERELDGTISVLHAAQRANLLNRREVSDIVRKRRHHEYNLLRKNV
SRTDYLHYAAFERELHLILKRRAKQRELTKLQVERTVDKTAARVNLIYSR
AVQKFRFDEDLWLHYAKHCIKTGSTRAAARVFAKAIAYRNDSERIWLAAI
AFHFDTNGDATGARTLAQRALRALPKSVKLWKEYFRLELCFLGKLVARRL
AIGIRPDAEDGDDQFSALNPGENQISGSGGLLDGNTSSGDADSGYESSDE
NNTDSARKDTTRQNSQAVMIEMEDKKCPASASEPESEQGPGVAEGTDSAD
QQDSERRTEVQDTTRDTDEYQEHDETNSGEESDSSSGAEGSDEESGESEC
SSDGNDESRTNTLSFWEGGVPFAVFRNASDRLKLSDIDRAEFWDVAASTP
FVPPKLLTHMLIFMKAKYMECCVVQLISIRQPWDIDRTTRKRSLGNKIGE
ENGEIYLSESDEVALSTHALEVAELLSTAISSTSFARLPDSSVAGVRLLL
QNFSEIVNNTCFSKTFEDAVKEILSRFEAHQAQGMFDVEELESGKGASAS
QQDMKEWTFSKFASLFQESNDGFSASPEVYDALKHKVIVPFRSLEQDRLV
CLYLSKENNISQIRSFTKAIMALPPVTMESLKAAINAELRILADSRKNDA
TMIPQSDQVMVSHTRKLFKLAISLPAAKRDVDLWLSYVDFERSVSGDMRE
ASTVNWKATKVLMPSFQESFTERQTLRNLAR*

spliced messenger RNA

>Ggra5806.t1 ID=Ggra5806.t1|Name=Ggra5806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2196bp|location=Sequence derived from alignment at tig00000935_pilon:357607..359802- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGTGACAAGGTCGAACGAGAGCTCGACGGCACTATCTCCGTACT
TCATGCTGCGCAACGTGCGAATCTTTTGAACCGCCGCGAAGTAAGCGACA
TAGTTCGCAAGCGTCGGCACCACGAATACAACCTGTTGCGAAAAAATGTC
TCCCGCACCGATTATCTTCACTATGCAGCCTTTGAACGTGAGCTTCACTT
AATATTGAAGCGAAGGGCGAAACAGAGGGAGTTAACCAAACTTCAAGTTG
AACGCACTGTCGACAAGACTGCCGCTCGCGTCAACCTGATATACAGCCGC
GCTGTGCAAAAGTTCCGATTTGACGAGGATTTGTGGCTTCATTATGCAAA
GCACTGTATCAAAACTGGTTCTACACGAGCTGCAGCGCGTGTCTTTGCGA
AAGCTATAGCCTACAGAAATGACTCAGAACGTATCTGGCTCGCTGCAATT
GCTTTTCACTTCGACACCAACGGCGACGCAACTGGAGCCAGAACCCTTGC
CCAACGAGCACTCAGAGCACTTCCCAAGTCTGTCAAACTATGGAAAGAAT
ACTTTCGACTCGAACTTTGTTTTCTAGGTAAACTAGTCGCGAGAAGATTG
GCAATTGGAATTCGTCCCGACGCAGAAGACGGTGATGACCAATTTTCTGC
ACTGAACCCAGGTGAAAACCAAATTTCCGGTTCCGGGGGCCTATTGGATG
GAAACACAAGCTCTGGAGACGCGGATAGTGGATACGAAAGCTCGGATGAG
AACAACACTGATAGTGCCCGGAAAGACACCACCCGTCAGAACAGCCAAGC
TGTCATGATAGAAATGGAGGATAAGAAGTGCCCCGCGAGCGCCTCAGAAC
CAGAGTCCGAACAAGGACCCGGCGTTGCGGAAGGAACAGATAGTGCGGAC
CAGCAAGATTCGGAAAGAAGGACGGAGGTGCAAGACACTACTCGTGATAC
TGATGAATACCAAGAACACGATGAGACTAATAGTGGCGAAGAAAGTGATA
GCAGTTCTGGTGCAGAAGGTAGCGACGAGGAGTCTGGGGAATCTGAATGC
AGCTCTGACGGAAATGACGAAAGTCGTACAAATACCCTCTCCTTTTGGGA
GGGCGGTGTTCCCTTTGCCGTATTTCGAAATGCTTCTGATCGTCTAAAAC
TATCGGACATTGACCGAGCTGAATTCTGGGATGTCGCGGCCAGCACCCCT
TTTGTCCCTCCAAAGCTATTGACACATATGCTCATATTTATGAAAGCAAA
ATACATGGAATGTTGCGTGGTACAGCTCATTTCCATTCGTCAACCATGGG
ATATTGATCGCACGACTCGCAAGAGAAGTCTGGGGAACAAGATTGGTGAG
GAGAACGGAGAGATATATCTCAGTGAAAGTGACGAAGTGGCCTTGTCCAC
TCATGCACTTGAAGTCGCAGAGCTTCTAAGCACTGCAATTTCTTCTACCT
CTTTTGCTCGACTCCCAGACTCTTCAGTTGCAGGAGTACGCTTGTTGCTT
CAAAACTTCAGCGAAATTGTCAACAACACATGTTTCTCTAAGACGTTCGA
GGACGCTGTAAAGGAAATACTCTCGCGTTTTGAAGCACATCAAGCTCAAG
GTATGTTCGATGTTGAGGAGCTCGAATCCGGCAAAGGCGCATCTGCATCT
CAACAGGACATGAAAGAGTGGACGTTTTCGAAGTTTGCGTCTCTGTTTCA
AGAATCTAACGACGGATTCAGTGCGAGTCCAGAAGTGTACGACGCCTTGA
AGCACAAGGTAATCGTTCCCTTTCGAAGTCTTGAACAGGATCGACTTGTG
TGTCTTTATCTCTCAAAAGAAAACAACATTAGCCAGATACGCAGCTTCAC
GAAAGCAATTATGGCATTGCCTCCGGTAACAATGGAGTCTTTGAAGGCTG
CGATAAATGCAGAATTACGGATACTTGCCGACTCTAGAAAGAATGATGCT
ACAATGATTCCTCAAAGTGACCAAGTTATGGTTTCTCACACAAGAAAATT
GTTCAAACTAGCAATATCTCTTCCGGCAGCAAAGAGAGATGTGGATCTAT
GGCTTTCTTACGTGGATTTCGAGAGGTCAGTCTCTGGGGACATGAGAGAA
GCATCAACAGTAAATTGGAAAGCCACAAAAGTATTAATGCCATCGTTCCA
GGAATCATTCACAGAACGCCAAACACTTCGAAATCTAGCCCGATGA

protein sequence of Ggra5806.t1

>Ggra5806.t1 ID=Ggra5806.t1|Name=Ggra5806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=732bp
MGGDKVERELDGTISVLHAAQRANLLNRREVSDIVRKRRHHEYNLLRKNV
SRTDYLHYAAFERELHLILKRRAKQRELTKLQVERTVDKTAARVNLIYSR
AVQKFRFDEDLWLHYAKHCIKTGSTRAAARVFAKAIAYRNDSERIWLAAI
AFHFDTNGDATGARTLAQRALRALPKSVKLWKEYFRLELCFLGKLVARRL
AIGIRPDAEDGDDQFSALNPGENQISGSGGLLDGNTSSGDADSGYESSDE
NNTDSARKDTTRQNSQAVMIEMEDKKCPASASEPESEQGPGVAEGTDSAD
QQDSERRTEVQDTTRDTDEYQEHDETNSGEESDSSSGAEGSDEESGESEC
SSDGNDESRTNTLSFWEGGVPFAVFRNASDRLKLSDIDRAEFWDVAASTP
FVPPKLLTHMLIFMKAKYMECCVVQLISIRQPWDIDRTTRKRSLGNKIGE
ENGEIYLSESDEVALSTHALEVAELLSTAISSTSFARLPDSSVAGVRLLL
QNFSEIVNNTCFSKTFEDAVKEILSRFEAHQAQGMFDVEELESGKGASAS
QQDMKEWTFSKFASLFQESNDGFSASPEVYDALKHKVIVPFRSLEQDRLV
CLYLSKENNISQIRSFTKAIMALPPVTMESLKAAINAELRILADSRKNDA
TMIPQSDQVMVSHTRKLFKLAISLPAAKRDVDLWLSYVDFERSVSGDMRE
ASTVNWKATKVLMPSFQESFTERQTLRNLAR*

mRNA from alignment at tig00000935_pilon:357607..359802-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5806.t1 ID=Ggra5806.t1|Name=Ggra5806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2196bp|location=Sequence derived from alignment at tig00000935_pilon:357607..359802- (Gracilaria gracilis GNS1m male)
ATGGGCGGTGACAAGGTCGAACGAGAGCTCGACGGCACTATCTCCGTACT
TCATGCTGCGCAACGTGCGAATCTTTTGAACCGCCGCGAAGTAAGCGACA
TAGTTCGCAAGCGTCGGCACCACGAATACAACCTGTTGCGAAAAAATGTC
TCCCGCACCGATTATCTTCACTATGCAGCCTTTGAACGTGAGCTTCACTT
AATATTGAAGCGAAGGGCGAAACAGAGGGAGTTAACCAAACTTCAAGTTG
AACGCACTGTCGACAAGACTGCCGCTCGCGTCAACCTGATATACAGCCGC
GCTGTGCAAAAGTTCCGATTTGACGAGGATTTGTGGCTTCATTATGCAAA
GCACTGTATCAAAACTGGTTCTACACGAGCTGCAGCGCGTGTCTTTGCGA
AAGCTATAGCCTACAGAAATGACTCAGAACGTATCTGGCTCGCTGCAATT
GCTTTTCACTTCGACACCAACGGCGACGCAACTGGAGCCAGAACCCTTGC
CCAACGAGCACTCAGAGCACTTCCCAAGTCTGTCAAACTATGGAAAGAAT
ACTTTCGACTCGAACTTTGTTTTCTAGGTAAACTAGTCGCGAGAAGATTG
GCAATTGGAATTCGTCCCGACGCAGAAGACGGTGATGACCAATTTTCTGC
ACTGAACCCAGGTGAAAACCAAATTTCCGGTTCCGGGGGCCTATTGGATG
GAAACACAAGCTCTGGAGACGCGGATAGTGGATACGAAAGCTCGGATGAG
AACAACACTGATAGTGCCCGGAAAGACACCACCCGTCAGAACAGCCAAGC
TGTCATGATAGAAATGGAGGATAAGAAGTGCCCCGCGAGCGCCTCAGAAC
CAGAGTCCGAACAAGGACCCGGCGTTGCGGAAGGAACAGATAGTGCGGAC
CAGCAAGATTCGGAAAGAAGGACGGAGGTGCAAGACACTACTCGTGATAC
TGATGAATACCAAGAACACGATGAGACTAATAGTGGCGAAGAAAGTGATA
GCAGTTCTGGTGCAGAAGGTAGCGACGAGGAGTCTGGGGAATCTGAATGC
AGCTCTGACGGAAATGACGAAAGTCGTACAAATACCCTCTCCTTTTGGGA
GGGCGGTGTTCCCTTTGCCGTATTTCGAAATGCTTCTGATCGTCTAAAAC
TATCGGACATTGACCGAGCTGAATTCTGGGATGTCGCGGCCAGCACCCCT
TTTGTCCCTCCAAAGCTATTGACACATATGCTCATATTTATGAAAGCAAA
ATACATGGAATGTTGCGTGGTACAGCTCATTTCCATTCGTCAACCATGGG
ATATTGATCGCACGACTCGCAAGAGAAGTCTGGGGAACAAGATTGGTGAG
GAGAACGGAGAGATATATCTCAGTGAAAGTGACGAAGTGGCCTTGTCCAC
TCATGCACTTGAAGTCGCAGAGCTTCTAAGCACTGCAATTTCTTCTACCT
CTTTTGCTCGACTCCCAGACTCTTCAGTTGCAGGAGTACGCTTGTTGCTT
CAAAACTTCAGCGAAATTGTCAACAACACATGTTTCTCTAAGACGTTCGA
GGACGCTGTAAAGGAAATACTCTCGCGTTTTGAAGCACATCAAGCTCAAG
GTATGTTCGATGTTGAGGAGCTCGAATCCGGCAAAGGCGCATCTGCATCT
CAACAGGACATGAAAGAGTGGACGTTTTCGAAGTTTGCGTCTCTGTTTCA
AGAATCTAACGACGGATTCAGTGCGAGTCCAGAAGTGTACGACGCCTTGA
AGCACAAGGTAATCGTTCCCTTTCGAAGTCTTGAACAGGATCGACTTGTG
TGTCTTTATCTCTCAAAAGAAAACAACATTAGCCAGATACGCAGCTTCAC
GAAAGCAATTATGGCATTGCCTCCGGTAACAATGGAGTCTTTGAAGGCTG
CGATAAATGCAGAATTACGGATACTTGCCGACTCTAGAAAGAATGATGCT
ACAATGATTCCTCAAAGTGACCAAGTTATGGTTTCTCACACAAGAAAATT
GTTCAAACTAGCAATATCTCTTCCGGCAGCAAAGAGAGATGTGGATCTAT
GGCTTTCTTACGTGGATTTCGAGAGGTCAGTCTCTGGGGACATGAGAGAA
GCATCAACAGTAAATTGGAAAGCCACAAAAGTATTAATGCCATCGTTCCA
GGAATCATTCACAGAACGCCAAACACTTCGAAATCTAGCCCGATGA

Coding sequence (CDS) from alignment at tig00000935_pilon:357607..359802-

>Ggra5806.t1 ID=Ggra5806.t1|Name=Ggra5806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2196bp|location=Sequence derived from alignment at tig00000935_pilon:357607..359802- (Gracilaria gracilis GNS1m male)
ATGGGCGGTGACAAGGTCGAACGAGAGCTCGACGGCACTATCTCCGTACT
TCATGCTGCGCAACGTGCGAATCTTTTGAACCGCCGCGAAGTAAGCGACA
TAGTTCGCAAGCGTCGGCACCACGAATACAACCTGTTGCGAAAAAATGTC
TCCCGCACCGATTATCTTCACTATGCAGCCTTTGAACGTGAGCTTCACTT
AATATTGAAGCGAAGGGCGAAACAGAGGGAGTTAACCAAACTTCAAGTTG
AACGCACTGTCGACAAGACTGCCGCTCGCGTCAACCTGATATACAGCCGC
GCTGTGCAAAAGTTCCGATTTGACGAGGATTTGTGGCTTCATTATGCAAA
GCACTGTATCAAAACTGGTTCTACACGAGCTGCAGCGCGTGTCTTTGCGA
AAGCTATAGCCTACAGAAATGACTCAGAACGTATCTGGCTCGCTGCAATT
GCTTTTCACTTCGACACCAACGGCGACGCAACTGGAGCCAGAACCCTTGC
CCAACGAGCACTCAGAGCACTTCCCAAGTCTGTCAAACTATGGAAAGAAT
ACTTTCGACTCGAACTTTGTTTTCTAGGTAAACTAGTCGCGAGAAGATTG
GCAATTGGAATTCGTCCCGACGCAGAAGACGGTGATGACCAATTTTCTGC
ACTGAACCCAGGTGAAAACCAAATTTCCGGTTCCGGGGGCCTATTGGATG
GAAACACAAGCTCTGGAGACGCGGATAGTGGATACGAAAGCTCGGATGAG
AACAACACTGATAGTGCCCGGAAAGACACCACCCGTCAGAACAGCCAAGC
TGTCATGATAGAAATGGAGGATAAGAAGTGCCCCGCGAGCGCCTCAGAAC
CAGAGTCCGAACAAGGACCCGGCGTTGCGGAAGGAACAGATAGTGCGGAC
CAGCAAGATTCGGAAAGAAGGACGGAGGTGCAAGACACTACTCGTGATAC
TGATGAATACCAAGAACACGATGAGACTAATAGTGGCGAAGAAAGTGATA
GCAGTTCTGGTGCAGAAGGTAGCGACGAGGAGTCTGGGGAATCTGAATGC
AGCTCTGACGGAAATGACGAAAGTCGTACAAATACCCTCTCCTTTTGGGA
GGGCGGTGTTCCCTTTGCCGTATTTCGAAATGCTTCTGATCGTCTAAAAC
TATCGGACATTGACCGAGCTGAATTCTGGGATGTCGCGGCCAGCACCCCT
TTTGTCCCTCCAAAGCTATTGACACATATGCTCATATTTATGAAAGCAAA
ATACATGGAATGTTGCGTGGTACAGCTCATTTCCATTCGTCAACCATGGG
ATATTGATCGCACGACTCGCAAGAGAAGTCTGGGGAACAAGATTGGTGAG
GAGAACGGAGAGATATATCTCAGTGAAAGTGACGAAGTGGCCTTGTCCAC
TCATGCACTTGAAGTCGCAGAGCTTCTAAGCACTGCAATTTCTTCTACCT
CTTTTGCTCGACTCCCAGACTCTTCAGTTGCAGGAGTACGCTTGTTGCTT
CAAAACTTCAGCGAAATTGTCAACAACACATGTTTCTCTAAGACGTTCGA
GGACGCTGTAAAGGAAATACTCTCGCGTTTTGAAGCACATCAAGCTCAAG
GTATGTTCGATGTTGAGGAGCTCGAATCCGGCAAAGGCGCATCTGCATCT
CAACAGGACATGAAAGAGTGGACGTTTTCGAAGTTTGCGTCTCTGTTTCA
AGAATCTAACGACGGATTCAGTGCGAGTCCAGAAGTGTACGACGCCTTGA
AGCACAAGGTAATCGTTCCCTTTCGAAGTCTTGAACAGGATCGACTTGTG
TGTCTTTATCTCTCAAAAGAAAACAACATTAGCCAGATACGCAGCTTCAC
GAAAGCAATTATGGCATTGCCTCCGGTAACAATGGAGTCTTTGAAGGCTG
CGATAAATGCAGAATTACGGATACTTGCCGACTCTAGAAAGAATGATGCT
ACAATGATTCCTCAAAGTGACCAAGTTATGGTTTCTCACACAAGAAAATT
GTTCAAACTAGCAATATCTCTTCCGGCAGCAAAGAGAGATGTGGATCTAT
GGCTTTCTTACGTGGATTTCGAGAGGTCAGTCTCTGGGGACATGAGAGAA
GCATCAACAGTAAATTGGAAAGCCACAAAAGTATTAATGCCATCGTTCCA
GGAATCATTCACAGAACGCCAAACACTTCGAAATCTAGCCCGATGA