Ggra5803.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5803.t1
Unique NameGgra5803.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:347330..348730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH256CT
PFAMsSE
Max annot lvl2759|Eukaryota
KEGG rclassRC00201
KEGG koko:K00511
KEGG ReactionR02874
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004497,GO:0004506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006629,GO:0006694,GO:0006950,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0010035,GO:0012505,GO:0016125,GO:0016126,GO:0016491,GO:0016705,GO:0016709,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901700
Evalue4.87e-160
EggNOG OGsCOG0654@1|root,KOG1298@2759|Eukaryota
EC1.14.14.17
Descriptionsqualene monooxygenase activity
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5803Ggra5803Gracilaria gracilis GNS1m malegenetig00000935_pilon 347330..348730 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5803.t1.start1Ggra5803.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 347330..347332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5803.t1.CDS1Ggra5803.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 347330..348730 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5803.t1.exon1Ggra5803.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 347330..348730 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5803.t1.stop1Ggra5803.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 348728..348730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5803.t1Ggra5803.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 347330..348730 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5803.t1 ID=Ggra5803.t1|Name=Ggra5803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=467bp
MQHASPYDVIVVGAGVAGGALINCLARDGRSVLCIERHLRAADGELSEPS
RIVGELLQPGGCEKLAELGLSDALSGIDAQPVYGYAMFLDGRSESISYTE
PSHKQRVGYSFHNGRFLKRLRQIALENENVSLVQGNVVSLEKDSSGNVIG
VCYRDDEKRLARAYAHLTIACDGCSSSLRKRAATQHQVSVYSNFHGLLLE
MSDVPFPNHGHVVLADPSPVLFYRISSREVRCLVDISSEYTGAVSDYMLN
VVMPQIPLQFQKPFQCAVKNGKSRMMPNRVMPAPADIIPGALLLGDAFNM
RHPLTGGGMTVALSDITIIRNLLKEVPDLSDVDTVSRKLDVFYSARKPMS
TTINILANALYTLFCAKGDPALKDMRDACFEYLGRGGRMTHDPISMLGGI
KPQRFLLVTHFFAVAFYGCGRAMLPFPTIERVSKAWSIFRASFNVIKPLI
DAENLWPLSSLPISSL*
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spliced messenger RNA

>Ggra5803.t1 ID=Ggra5803.t1|Name=Ggra5803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000935_pilon:347330..348730+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCACGcgtcgccgtacgacgtcatcgtcgtcggtgccggcgttgc
cggcggcgcgtTGATAAACTGTTTGGCGCGCGATGGTCGAAGCGTGCTGT
GCATCGAGCGCCATTTGCGGGCTGCCGATGGCGAGCTGAGCGAGCCTTCG
CGTATTGTGGGCGAGCTTTTGCAACCGGGTGGCTGTGAGAAACTCGCTGA
GCTTGGGCTTAGCGACGCGCTTTCTGGCATTGATGCGCAGCCGGTTTATG
GCTACGCCATGTTCCTTGATGGTCGTTCTGAGTCTATCTCGTACACCGAG
CCGTCACACAAGCAGCGAGTGGGCTACAGCTTTCACAACGGCCGCTTTTT
GAAGAGATTGCGTCAGATTGCGCTCGAGAATGAAAACGTCTCTCTCGTGC
AGGGAAATGTTGTGTCGCTTGAGAAAGATTCGTCTGGCAACGTCATCGGT
GTATGCTATCGTGATGATGAAAAGCGTCTCGCTCGCGCCTACGCCCATCT
AACTATCGCCTGCGATGGCTGTTCAAGTAGCTTGCGGAAGCGAGCTGCTA
CTCAACATCAAGTGTCAGTTTACTCCAACTTTCATGGCTTGCTGCTGGAG
ATGTCCGACGTTCCCTTCCCCAATCACGGCCATGTGGTACTTGCAGACCC
TTCACCAGTGCTGTTTTACAGGATAAGCAGTCGTGAAGTCCGTTGTCTCG
TCGACATTTCCAGCGAGTACACTGGCGCTGTGTCCGATTACATGTTAAAC
GTCGTCATGCCTCAAATTCCGCTACAGTTTCAGAAACCGTTCCAGTGCGC
CGTCAAAAACGGAAAGTCGAGAATGATGCCCAACCGAGTCATGCCTGCCC
CGGCAGACATCATCCCTGGAGCACTTCTGTTAGGAGATGCTTTCAACATG
CGCCACCCGCTTACGGGCGGTGGCATGACGGTTGCGTTGTCAGATATCAC
CATCATTCGCAACTTGCTCAAGGAAGTGCCCGATTTATCCGATGTCGACA
CCGTTTCACGCAAGCTTGACGTGTTTTATTCTGCTCGGAAACCCATGTCA
ACTACGATAAATATTCTAGCCAATGCACTATACACACTTTTTTGCGCAAA
GGGCGACCCAGCCCTCAAGGACATGCGAGATGCTTGTTTCGAATATCTTG
GTAGGGGCGGAAGGATGACTCATGATCCCATATCTATGCTTGGTGGAATC
AAGCCACAGCGATTCTTACTCGTCACTCACTTTTTCGCTGTGGCTTTTTA
CGGATGTGGGAGAGCAATGCTGCCGTTTCCGACTATCGAGCGAGTGAGCA
AGGCTTGGAGCATATTCAGGGCTTCTTTCAACGTCATCAAGCCCTTGATA
GATGCAGAAAACTTGTGGCCATTGTCGTCACTGCCTATCTCTTCATTGTA
G
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protein sequence of Ggra5803.t1

>Ggra5803.t1 ID=Ggra5803.t1|Name=Ggra5803.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=467bp
MQHASPYDVIVVGAGVAGGALINCLARDGRSVLCIERHLRAADGELSEPS
RIVGELLQPGGCEKLAELGLSDALSGIDAQPVYGYAMFLDGRSESISYTE
PSHKQRVGYSFHNGRFLKRLRQIALENENVSLVQGNVVSLEKDSSGNVIG
VCYRDDEKRLARAYAHLTIACDGCSSSLRKRAATQHQVSVYSNFHGLLLE
MSDVPFPNHGHVVLADPSPVLFYRISSREVRCLVDISSEYTGAVSDYMLN
VVMPQIPLQFQKPFQCAVKNGKSRMMPNRVMPAPADIIPGALLLGDAFNM
RHPLTGGGMTVALSDITIIRNLLKEVPDLSDVDTVSRKLDVFYSARKPMS
TTINILANALYTLFCAKGDPALKDMRDACFEYLGRGGRMTHDPISMLGGI
KPQRFLLVTHFFAVAFYGCGRAMLPFPTIERVSKAWSIFRASFNVIKPLI
DAENLWPLSSLPISSL*
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mRNA from alignment at tig00000935_pilon:347330..348730+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5803.t1 ID=Ggra5803.t1|Name=Ggra5803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000935_pilon:347330..348730+ (Gracilaria gracilis GNS1m male)
ATGCAGCACGcgtcgccgtacgacgtcatcgtcgtcggtgccggcgttgc
cggcggcgcgtTGATAAACTGTTTGGCGCGCGATGGTCGAAGCGTGCTGT
GCATCGAGCGCCATTTGCGGGCTGCCGATGGCGAGCTGAGCGAGCCTTCG
CGTATTGTGGGCGAGCTTTTGCAACCGGGTGGCTGTGAGAAACTCGCTGA
GCTTGGGCTTAGCGACGCGCTTTCTGGCATTGATGCGCAGCCGGTTTATG
GCTACGCCATGTTCCTTGATGGTCGTTCTGAGTCTATCTCGTACACCGAG
CCGTCACACAAGCAGCGAGTGGGCTACAGCTTTCACAACGGCCGCTTTTT
GAAGAGATTGCGTCAGATTGCGCTCGAGAATGAAAACGTCTCTCTCGTGC
AGGGAAATGTTGTGTCGCTTGAGAAAGATTCGTCTGGCAACGTCATCGGT
GTATGCTATCGTGATGATGAAAAGCGTCTCGCTCGCGCCTACGCCCATCT
AACTATCGCCTGCGATGGCTGTTCAAGTAGCTTGCGGAAGCGAGCTGCTA
CTCAACATCAAGTGTCAGTTTACTCCAACTTTCATGGCTTGCTGCTGGAG
ATGTCCGACGTTCCCTTCCCCAATCACGGCCATGTGGTACTTGCAGACCC
TTCACCAGTGCTGTTTTACAGGATAAGCAGTCGTGAAGTCCGTTGTCTCG
TCGACATTTCCAGCGAGTACACTGGCGCTGTGTCCGATTACATGTTAAAC
GTCGTCATGCCTCAAATTCCGCTACAGTTTCAGAAACCGTTCCAGTGCGC
CGTCAAAAACGGAAAGTCGAGAATGATGCCCAACCGAGTCATGCCTGCCC
CGGCAGACATCATCCCTGGAGCACTTCTGTTAGGAGATGCTTTCAACATG
CGCCACCCGCTTACGGGCGGTGGCATGACGGTTGCGTTGTCAGATATCAC
CATCATTCGCAACTTGCTCAAGGAAGTGCCCGATTTATCCGATGTCGACA
CCGTTTCACGCAAGCTTGACGTGTTTTATTCTGCTCGGAAACCCATGTCA
ACTACGATAAATATTCTAGCCAATGCACTATACACACTTTTTTGCGCAAA
GGGCGACCCAGCCCTCAAGGACATGCGAGATGCTTGTTTCGAATATCTTG
GTAGGGGCGGAAGGATGACTCATGATCCCATATCTATGCTTGGTGGAATC
AAGCCACAGCGATTCTTACTCGTCACTCACTTTTTCGCTGTGGCTTTTTA
CGGATGTGGGAGAGCAATGCTGCCGTTTCCGACTATCGAGCGAGTGAGCA
AGGCTTGGAGCATATTCAGGGCTTCTTTCAACGTCATCAAGCCCTTGATA
GATGCAGAAAACTTGTGGCCATTGTCGTCACTGCCTATCTCTTCATTGTA
G
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Coding sequence (CDS) from alignment at tig00000935_pilon:347330..348730+

>Ggra5803.t1 ID=Ggra5803.t1|Name=Ggra5803.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000935_pilon:347330..348730+ (Gracilaria gracilis GNS1m male)
ATGCAGCACGcgtcgccgtacgacgtcatcgtcgtcggtgccggcgttgc
cggcggcgcgtTGATAAACTGTTTGGCGCGCGATGGTCGAAGCGTGCTGT
GCATCGAGCGCCATTTGCGGGCTGCCGATGGCGAGCTGAGCGAGCCTTCG
CGTATTGTGGGCGAGCTTTTGCAACCGGGTGGCTGTGAGAAACTCGCTGA
GCTTGGGCTTAGCGACGCGCTTTCTGGCATTGATGCGCAGCCGGTTTATG
GCTACGCCATGTTCCTTGATGGTCGTTCTGAGTCTATCTCGTACACCGAG
CCGTCACACAAGCAGCGAGTGGGCTACAGCTTTCACAACGGCCGCTTTTT
GAAGAGATTGCGTCAGATTGCGCTCGAGAATGAAAACGTCTCTCTCGTGC
AGGGAAATGTTGTGTCGCTTGAGAAAGATTCGTCTGGCAACGTCATCGGT
GTATGCTATCGTGATGATGAAAAGCGTCTCGCTCGCGCCTACGCCCATCT
AACTATCGCCTGCGATGGCTGTTCAAGTAGCTTGCGGAAGCGAGCTGCTA
CTCAACATCAAGTGTCAGTTTACTCCAACTTTCATGGCTTGCTGCTGGAG
ATGTCCGACGTTCCCTTCCCCAATCACGGCCATGTGGTACTTGCAGACCC
TTCACCAGTGCTGTTTTACAGGATAAGCAGTCGTGAAGTCCGTTGTCTCG
TCGACATTTCCAGCGAGTACACTGGCGCTGTGTCCGATTACATGTTAAAC
GTCGTCATGCCTCAAATTCCGCTACAGTTTCAGAAACCGTTCCAGTGCGC
CGTCAAAAACGGAAAGTCGAGAATGATGCCCAACCGAGTCATGCCTGCCC
CGGCAGACATCATCCCTGGAGCACTTCTGTTAGGAGATGCTTTCAACATG
CGCCACCCGCTTACGGGCGGTGGCATGACGGTTGCGTTGTCAGATATCAC
CATCATTCGCAACTTGCTCAAGGAAGTGCCCGATTTATCCGATGTCGACA
CCGTTTCACGCAAGCTTGACGTGTTTTATTCTGCTCGGAAACCCATGTCA
ACTACGATAAATATTCTAGCCAATGCACTATACACACTTTTTTGCGCAAA
GGGCGACCCAGCCCTCAAGGACATGCGAGATGCTTGTTTCGAATATCTTG
GTAGGGGCGGAAGGATGACTCATGATCCCATATCTATGCTTGGTGGAATC
AAGCCACAGCGATTCTTACTCGTCACTCACTTTTTCGCTGTGGCTTTTTA
CGGATGTGGGAGAGCAATGCTGCCGTTTCCGACTATCGAGCGAGTGAGCA
AGGCTTGGAGCATATTCAGGGCTTCTTTCAACGTCATCAAGCCCTTGATA
GATGCAGAAAACTTGTGGCCATTGTCGTCACTGCCTATCTCTTCATTGTA
G
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