Ggra5802.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5802.t1
Unique NameGgra5802.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:345885..346679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709296.1
PFAMsUPF0016
Max annot lvl2759|Eukaryota
Evalue1.57e-61
EggNOG OGsCOG2119@1|root,KOG2881@2759|Eukaryota
DescriptionGolgi calcium ion transport
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5802Ggra5802Gracilaria gracilis GNS1m malegenetig00000935_pilon 345885..346679 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5802.t1.stop1Ggra5802.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 345885..345887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5802.t1.CDS1Ggra5802.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 345885..346679 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5802.t1.exon1Ggra5802.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 345885..346679 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5802.t1.start1Ggra5802.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 346677..346679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5802.t1Ggra5802.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 345885..346679 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5802.t1 ID=Ggra5802.t1|Name=Ggra5802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MHLLTILAALLLLFVFVIAVPVQPPSLDDAHDMQSILSLLPESVRVSLAD
DAGFMSAFVQSFVLILACELGDRTFFVAAILAMKSSRLTIWAGALSALAA
MTVLSAAIGKAFPLLLDKRYTSLAAAALFLYFGLQLLRDWWRMRRVAKSE
NEELAEVEEELATPDKKPKPSRLPGLPPAFMKSLTMTALAEWGDRSQIAT
IALAASKDIYGVILGGVLGHSICTGLAVVGGRLLASKISEKAVALTGGVL
FVSFAMITAGGYVE*
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spliced messenger RNA

>Ggra5802.t1 ID=Ggra5802.t1|Name=Ggra5802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000935_pilon:345885..346679- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCCTCACCATACTCGCCGCCCTCTTGCTTCTCTTCGTGTTTGT
GATAGCCGTCCCCGTGCAGCCGCCCTCCCTCGACGACGCGCACGACATGC
AGTCAATTCTATCGCTGTTGCCCGAGTCCGTGCGCGTGTCACTAGCCGAT
GACGCCGGCTTCATGTCCGCCTTCGTGCAATCCTTCGTGCTCATTCTGGC
ATGTGAACTTGGCGACCGCACTTTTTTCGTCGCGGCAATTCTCGCCATGA
AGTCGTCGCGTCTCACCATTTGGGCCGGTGCACTGTCCGCCCTGGCCGCC
ATGACCGTCCTTTCCGCCGCCATTGGCAAGGCCTTTCCGCTACTGCTTGA
CAAGCGCTACACCTCCTTGGCTGCCGCCGCCCTCTTTTTGTACTTTGGGC
TGCAGCTGCTGCGCGACTGGTGGCGTATGCGCCGCGTCGCCAAGTCGGAG
AATGAGGAGTTGGCAGAGGTTGAGGAGGAGCTTGCCACCCCGGATAAGAA
GCCCAAGCCTTCTCGACTACCGGGCCTTCCGCCGGCCTTCATGAAATCGC
TCACCATGACCGCGCTGGCCGAGTGGGGCGATCGTAGTCAGATTGCCACC
ATTGCGCTCGCCGCGTCCAAAGATATCTATGGCGTCATTCTTGGTGGCGT
GCTTGGTCATTCTATCTGCACTGGGCTCGCTGTCGTCGGCGGCCGTCTTT
TGGCCTCCAAGATTTCTGAGAAGGCTGTCGCGCTTACGGGGGGTGTTTTG
TTTGTTTCGTTTGCAATGATTACTGCCGGCGGTTACGTCGAATAA
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protein sequence of Ggra5802.t1

>Ggra5802.t1 ID=Ggra5802.t1|Name=Ggra5802.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MHLLTILAALLLLFVFVIAVPVQPPSLDDAHDMQSILSLLPESVRVSLAD
DAGFMSAFVQSFVLILACELGDRTFFVAAILAMKSSRLTIWAGALSALAA
MTVLSAAIGKAFPLLLDKRYTSLAAAALFLYFGLQLLRDWWRMRRVAKSE
NEELAEVEEELATPDKKPKPSRLPGLPPAFMKSLTMTALAEWGDRSQIAT
IALAASKDIYGVILGGVLGHSICTGLAVVGGRLLASKISEKAVALTGGVL
FVSFAMITAGGYVE*
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mRNA from alignment at tig00000935_pilon:345885..346679-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5802.t1 ID=Ggra5802.t1|Name=Ggra5802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000935_pilon:345885..346679- (Gracilaria gracilis GNS1m male)
ATGCACCTCCTCACCATACTCGCCGCCCTCTTGCTTCTCTTCGTGTTTGT
GATAGCCGTCCCCGTGCAGCCGCCCTCCCTCGACGACGCGCACGACATGC
AGTCAATTCTATCGCTGTTGCCCGAGTCCGTGCGCGTGTCACTAGCCGAT
GACGCCGGCTTCATGTCCGCCTTCGTGCAATCCTTCGTGCTCATTCTGGC
ATGTGAACTTGGCGACCGCACTTTTTTCGTCGCGGCAATTCTCGCCATGA
AGTCGTCGCGTCTCACCATTTGGGCCGGTGCACTGTCCGCCCTGGCCGCC
ATGACCGTCCTTTCCGCCGCCATTGGCAAGGCCTTTCCGCTACTGCTTGA
CAAGCGCTACACCTCCTTGGCTGCCGCCGCCCTCTTTTTGTACTTTGGGC
TGCAGCTGCTGCGCGACTGGTGGCGTATGCGCCGCGTCGCCAAGTCGGAG
AATGAGGAGTTGGCAGAGGTTGAGGAGGAGCTTGCCACCCCGGATAAGAA
GCCCAAGCCTTCTCGACTACCGGGCCTTCCGCCGGCCTTCATGAAATCGC
TCACCATGACCGCGCTGGCCGAGTGGGGCGATCGTAGTCAGATTGCCACC
ATTGCGCTCGCCGCGTCCAAAGATATCTATGGCGTCATTCTTGGTGGCGT
GCTTGGTCATTCTATCTGCACTGGGCTCGCTGTCGTCGGCGGCCGTCTTT
TGGCCTCCAAGATTTCTGAGAAGGCTGTCGCGCTTACGGGGGGTGTTTTG
TTTGTTTCGTTTGCAATGATTACTGCCGGCGGTTACGTCGAATAA
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Coding sequence (CDS) from alignment at tig00000935_pilon:345885..346679-

>Ggra5802.t1 ID=Ggra5802.t1|Name=Ggra5802.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000935_pilon:345885..346679- (Gracilaria gracilis GNS1m male)
ATGCACCTCCTCACCATACTCGCCGCCCTCTTGCTTCTCTTCGTGTTTGT
GATAGCCGTCCCCGTGCAGCCGCCCTCCCTCGACGACGCGCACGACATGC
AGTCAATTCTATCGCTGTTGCCCGAGTCCGTGCGCGTGTCACTAGCCGAT
GACGCCGGCTTCATGTCCGCCTTCGTGCAATCCTTCGTGCTCATTCTGGC
ATGTGAACTTGGCGACCGCACTTTTTTCGTCGCGGCAATTCTCGCCATGA
AGTCGTCGCGTCTCACCATTTGGGCCGGTGCACTGTCCGCCCTGGCCGCC
ATGACCGTCCTTTCCGCCGCCATTGGCAAGGCCTTTCCGCTACTGCTTGA
CAAGCGCTACACCTCCTTGGCTGCCGCCGCCCTCTTTTTGTACTTTGGGC
TGCAGCTGCTGCGCGACTGGTGGCGTATGCGCCGCGTCGCCAAGTCGGAG
AATGAGGAGTTGGCAGAGGTTGAGGAGGAGCTTGCCACCCCGGATAAGAA
GCCCAAGCCTTCTCGACTACCGGGCCTTCCGCCGGCCTTCATGAAATCGC
TCACCATGACCGCGCTGGCCGAGTGGGGCGATCGTAGTCAGATTGCCACC
ATTGCGCTCGCCGCGTCCAAAGATATCTATGGCGTCATTCTTGGTGGCGT
GCTTGGTCATTCTATCTGCACTGGGCTCGCTGTCGTCGGCGGCCGTCTTT
TGGCCTCCAAGATTTCTGAGAAGGCTGTCGCGCTTACGGGGGGTGTTTTG
TTTGTTTCGTTTGCAATGATTACTGCCGGCGGTTACGTCGAATAA
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