Ggra5801.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5801.t1
Unique Name	Ggra5801.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	748

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000935_pilon	contig	tig00000935_pilon:343427..345670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	316274.Haur_3075
Preferred name	nusA
PFAMs	AAA_11,AAA_12,AAA_30,DUF2779,RNase_H_2
Max annot lvl	2\|Bacteria
KEGG ko	ko:K02600
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Evalue	6.58e-07
EggNOG OGs	COG2251@1\|root,COG2251@2\|Bacteria
BRITE	ko00000,ko03009,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5801	Ggra5801	Gracilaria gracilis GNS1m male	gene	tig00000935_pilon 343427..345670 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5801.t1.start1	Ggra5801.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000935_pilon 343427..343429 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5801.t1.CDS1	Ggra5801.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000935_pilon 343427..345670 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5801.t1.exon1	Ggra5801.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000935_pilon 343427..345670 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5801.t1.stop1	Ggra5801.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000935_pilon 345668..345670 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5801.t1	Ggra5801.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000935_pilon 343427..345670 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000935_pilon:343427..345670+
coding sequence from alignment at tig00000935_pilon:343427..345670+

mRNA sequence

>Ggra5801.t1 ID=Ggra5801.t1|Name=Ggra5801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=748bp
MAAVGDRTTQRCAACTSCCSRTYPRYQRYAFCAAFSAAAPRPRRAPRLCT
TRMSERVLNLSALPPRNSAHWVNTYATQNAFSHNHLLDLLDLYAAQHAIL
RDDQLPHWKPSASFAVRMRTLGAEFRRQVTGAFARRVGFDHLLCVPTDTH
VMSTSEQSQCTTNAMQRGVKMIAGAVLTDERARLFARVPILLRADVADHI
FNLALDASHLQQPYVYIAVAIKRRSVETKGSAVIRNMCLEKLQKEIFLWN
LLLSQSQRVDVGKALIIGLHPKRKKAVATGAVPYKPSDMHAKQNAPAVFD
KKVWKLAVLPLHELRERERESALDALKWRMAVVDEGDAWLMQAVERLAPS
KPSKLAAACDRAQAINPILELLRTTSDPRLRPNMKSASMFDWPWENAKKQ
LAHNLRELTLVSGVSRSATEQAMTKGIPNDYSHHQVTAEALGSKSLFTTQ
TLLKSKPGYNGPVVTPRIIPHNKANWRLLKDFSRQYPHRFSKNGEMLPDI
DKRSFYVDLELASAEYLYADDTTKLSDDTDSELLQEYGGVFDVYPKSPLI
AETIPDPLVFMIGCGQVVDGNWQHKVFVTDTLDKRGEQQVIIEWLQHMHA
VTRTMKEPALVHVWGPEKQLLKQAFRRMPQPVVHEIAPFRNYEIMDVHKI
VSTSCVSIRGSLNNSIKNVARALQNLGLLDDCGERDTEGGVENGVDAIAA
VLYAAELVHKNKASSLSKVETVQNVARYNEHDCRDVARIVAYLRKNH*

spliced messenger RNA

>Ggra5801.t1 ID=Ggra5801.t1|Name=Ggra5801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2244bp|location=Sequence derived from alignment at tig00000935_pilon:343427..345670+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCAGTAGGCGACCGCACCACGCAGCGCTGCGCCGCTTGCACGTC
GTGCTGCTCCCGAACGTACCCGCGGTACCAACGGTACGCCTTCTGCGCCG
CCTTCTCTGCCGCTGCGCCGCGTCCACGCCGAGCGCCTCGTCTGTGCACC
ACCCGCATGAGCGAGCGCGTGCTCAACTTGTCGGCGTTGCCGCCGAGAAA
CAGCGCCCACTGGGTCAATACGTACGCCACGCAGAATGCCTTCTCTCACA
ATCATCTGCTCGACCTGCTCGACCTGTACGCTGCGCAGCATGCCATCCTG
CGAGATGACCAGCTCCCGCATTGGAAACCCTCCGCGTCGTTCGCAGTTCG
CATGCGAACGCTCGGTGCTGAGTTTCGTCGACAGGTCACAGGCGCCTTTG
CGCGCCGCGTCGGCTTTGACCACCTGCTGTGCGTGCCGACCGACACCCAC
GTCATGAGCACTAGTGAGCAGAGTCAGTGCACCACGAATGCCATGCAGCG
GGGCGTCAAGATGATCGCCGGCGCTGTGCTCACCGATGAGCGTGCGAGGC
TGTTTGCTCGTGTCCCCATCTTGCTGCGCGCTGATGTCGCAGACCATATA
TTCAATCTCGCTCTTGACGCCTCTCACCTGCAACAGCCGTATGTTTATAT
CGCCGTCGCTATTAAACGACGCTCTGTGGAGACAAAGGGCTCGGCTGTCA
TTAGGAACATGTGTCTGGAGAAGCTGCAGAAGGAGATCTTCTTGTGGAAT
CTGTTGTTGTCACAATCGCAGCGCGTCGATGTTGGAAAGGCGTTGATCAT
TGGCTTGCATCCAAAGCGCAAGAAGGCTGTTGCCACAGGTGCCGTGCCGT
ATAAACCATCTGATATGCACGCCAAGCAAAACGCGCCCGCCGTGTTTGAC
AAGAAGGTGTGGAAACTGGCGGTGCTCCCGCTGCATGAGTTGCGCGAGCG
CGAGAGAGAGAGCGCGTTGGATGCGTTGAAATGGCGCATGGCCGTGGTGG
ATGAAGGCGACGCGTGGTTGATGCAGGCTGTCGAACGTTTGGCTCCAAGT
AAGCCATCGAAGCTGGCTGCTGCATGTGACCGCGCGCAGGCGATCAACCC
GATTTTGGAGTTGCTTCGCACCACGTCTGACCCACGTTTGAGACCGAATA
TGAAGAGCGCGTCCATGTTCGACTGGCCGTGGGAGAACGCGAAGAAGCAG
CTCGCACACAATTTGCGCGAGCTTACGTTGGTGTCCGGCGTCAGTAGAAG
CGCCACTGAACAAGCGATGACAAAAGGCATTCCGAACGATTATTCGCATC
ATCAGGTCACGGCGGAAGCGCTGGGTTCAAAGTCGTTGTTTACGACGCAA
ACCCTGTTGAAGAGCAAGCCAGGGTACAATGGCCCTGTTGTCACTCCGAG
AATCATACCGCACAACAAGGCAAACTGGAGGCTTTTGAAAGACTTTAGTC
GGCAATATCCTCATCGTTTCAGTAAGAATGGTGAGATGCTACCTGATATC
GATAAGAGATCGTTCTACGTCGACTTGGAGCTCGCCTCGGCAGAGTACCT
GTACGCTGATGATACTACAAAACTATCGGATGATACCGACTCGGAGCTGT
TGCAAGAGTACGGCGGGGTGTTCGATGTTTATCCGAAATCGCCTTTAATT
GCTGAGACCATCCCAGACCCGCTGGTGTTTATGATCGGCTGCGGCCAGGT
AGTAGATGGCAACTGGCAGCACAAAGTTTTCGTGACCGACACCCTTGACA
AACGGGGGGAACAACAAGTAATCATAGAATGGTTGCAGCATATGCATGCA
GTGACTCGTACTATGAAAGAACCTGCTCTCGTGCACGTGTGGGGTCCGGA
GAAACAGTTGTTGAAGCAAGCCTTCCGTCGCATGCCTCAGCCGGTGGTTC
ATGAAATAGCACCTTTTCGGAACTATGAGATAATGGACGTGCACAAGATA
GTGTCCACTTCTTGCGTGTCCATCCGCGGAAGCTTGAACAATTCTATCAA
AAACGTAGCAAGAGCTCTTCAGAATTTAGGGTTGTTGGATGATTGTGGAG
AAAGAGACACCGAAGGAGGAGTAGAGAATGGCGTTGATGCAATAGCAGCT
GTGCTATATGCAGCGGAACTTGTGCATAAAAACAAGGCATCATCGTTATC
AAAGGTTGAAACGGTTCAAAATGTAGCACGGTACAATGAACACGACTGCA
GGGACGTGGCGCGCATCGTGGCATACTTGAGAAAAAACCATTGA

protein sequence of Ggra5801.t1

>Ggra5801.t1 ID=Ggra5801.t1|Name=Ggra5801.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=748bp
MAAVGDRTTQRCAACTSCCSRTYPRYQRYAFCAAFSAAAPRPRRAPRLCT
TRMSERVLNLSALPPRNSAHWVNTYATQNAFSHNHLLDLLDLYAAQHAIL
RDDQLPHWKPSASFAVRMRTLGAEFRRQVTGAFARRVGFDHLLCVPTDTH
VMSTSEQSQCTTNAMQRGVKMIAGAVLTDERARLFARVPILLRADVADHI
FNLALDASHLQQPYVYIAVAIKRRSVETKGSAVIRNMCLEKLQKEIFLWN
LLLSQSQRVDVGKALIIGLHPKRKKAVATGAVPYKPSDMHAKQNAPAVFD
KKVWKLAVLPLHELRERERESALDALKWRMAVVDEGDAWLMQAVERLAPS
KPSKLAAACDRAQAINPILELLRTTSDPRLRPNMKSASMFDWPWENAKKQ
LAHNLRELTLVSGVSRSATEQAMTKGIPNDYSHHQVTAEALGSKSLFTTQ
TLLKSKPGYNGPVVTPRIIPHNKANWRLLKDFSRQYPHRFSKNGEMLPDI
DKRSFYVDLELASAEYLYADDTTKLSDDTDSELLQEYGGVFDVYPKSPLI
AETIPDPLVFMIGCGQVVDGNWQHKVFVTDTLDKRGEQQVIIEWLQHMHA
VTRTMKEPALVHVWGPEKQLLKQAFRRMPQPVVHEIAPFRNYEIMDVHKI
VSTSCVSIRGSLNNSIKNVARALQNLGLLDDCGERDTEGGVENGVDAIAA
VLYAAELVHKNKASSLSKVETVQNVARYNEHDCRDVARIVAYLRKNH*

mRNA from alignment at tig00000935_pilon:343427..345670+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5801.t1 ID=Ggra5801.t1|Name=Ggra5801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2244bp|location=Sequence derived from alignment at tig00000935_pilon:343427..345670+ (Gracilaria gracilis GNS1m male)
ATGGCCGCAGTAGGCGACCGCACCACGCAGCGCTGCGCCGCTTGCACGTC
GTGCTGCTCCCGAACGTACCCGCGGTACCAACGGTACGCCTTCTGCGCCG
CCTTCTCTGCCGCTGCGCCGCGTCCACGCCGAGCGCCTCGTCTGTGCACC
ACCCGCATGAGCGAGCGCGTGCTCAACTTGTCGGCGTTGCCGCCGAGAAA
CAGCGCCCACTGGGTCAATACGTACGCCACGCAGAATGCCTTCTCTCACA
ATCATCTGCTCGACCTGCTCGACCTGTACGCTGCGCAGCATGCCATCCTG
CGAGATGACCAGCTCCCGCATTGGAAACCCTCCGCGTCGTTCGCAGTTCG
CATGCGAACGCTCGGTGCTGAGTTTCGTCGACAGGTCACAGGCGCCTTTG
CGCGCCGCGTCGGCTTTGACCACCTGCTGTGCGTGCCGACCGACACCCAC
GTCATGAGCACTAGTGAGCAGAGTCAGTGCACCACGAATGCCATGCAGCG
GGGCGTCAAGATGATCGCCGGCGCTGTGCTCACCGATGAGCGTGCGAGGC
TGTTTGCTCGTGTCCCCATCTTGCTGCGCGCTGATGTCGCAGACCATATA
TTCAATCTCGCTCTTGACGCCTCTCACCTGCAACAGCCGTATGTTTATAT
CGCCGTCGCTATTAAACGACGCTCTGTGGAGACAAAGGGCTCGGCTGTCA
TTAGGAACATGTGTCTGGAGAAGCTGCAGAAGGAGATCTTCTTGTGGAAT
CTGTTGTTGTCACAATCGCAGCGCGTCGATGTTGGAAAGGCGTTGATCAT
TGGCTTGCATCCAAAGCGCAAGAAGGCTGTTGCCACAGGTGCCGTGCCGT
ATAAACCATCTGATATGCACGCCAAGCAAAACGCGCCCGCCGTGTTTGAC
AAGAAGGTGTGGAAACTGGCGGTGCTCCCGCTGCATGAGTTGCGCGAGCG
CGAGAGAGAGAGCGCGTTGGATGCGTTGAAATGGCGCATGGCCGTGGTGG
ATGAAGGCGACGCGTGGTTGATGCAGGCTGTCGAACGTTTGGCTCCAAGT
AAGCCATCGAAGCTGGCTGCTGCATGTGACCGCGCGCAGGCGATCAACCC
GATTTTGGAGTTGCTTCGCACCACGTCTGACCCACGTTTGAGACCGAATA
TGAAGAGCGCGTCCATGTTCGACTGGCCGTGGGAGAACGCGAAGAAGCAG
CTCGCACACAATTTGCGCGAGCTTACGTTGGTGTCCGGCGTCAGTAGAAG
CGCCACTGAACAAGCGATGACAAAAGGCATTCCGAACGATTATTCGCATC
ATCAGGTCACGGCGGAAGCGCTGGGTTCAAAGTCGTTGTTTACGACGCAA
ACCCTGTTGAAGAGCAAGCCAGGGTACAATGGCCCTGTTGTCACTCCGAG
AATCATACCGCACAACAAGGCAAACTGGAGGCTTTTGAAAGACTTTAGTC
GGCAATATCCTCATCGTTTCAGTAAGAATGGTGAGATGCTACCTGATATC
GATAAGAGATCGTTCTACGTCGACTTGGAGCTCGCCTCGGCAGAGTACCT
GTACGCTGATGATACTACAAAACTATCGGATGATACCGACTCGGAGCTGT
TGCAAGAGTACGGCGGGGTGTTCGATGTTTATCCGAAATCGCCTTTAATT
GCTGAGACCATCCCAGACCCGCTGGTGTTTATGATCGGCTGCGGCCAGGT
AGTAGATGGCAACTGGCAGCACAAAGTTTTCGTGACCGACACCCTTGACA
AACGGGGGGAACAACAAGTAATCATAGAATGGTTGCAGCATATGCATGCA
GTGACTCGTACTATGAAAGAACCTGCTCTCGTGCACGTGTGGGGTCCGGA
GAAACAGTTGTTGAAGCAAGCCTTCCGTCGCATGCCTCAGCCGGTGGTTC
ATGAAATAGCACCTTTTCGGAACTATGAGATAATGGACGTGCACAAGATA
GTGTCCACTTCTTGCGTGTCCATCCGCGGAAGCTTGAACAATTCTATCAA
AAACGTAGCAAGAGCTCTTCAGAATTTAGGGTTGTTGGATGATTGTGGAG
AAAGAGACACCGAAGGAGGAGTAGAGAATGGCGTTGATGCAATAGCAGCT
GTGCTATATGCAGCGGAACTTGTGCATAAAAACAAGGCATCATCGTTATC
AAAGGTTGAAACGGTTCAAAATGTAGCACGGTACAATGAACACGACTGCA
GGGACGTGGCGCGCATCGTGGCATACTTGAGAAAAAACCATTGA

Coding sequence (CDS) from alignment at tig00000935_pilon:343427..345670+

>Ggra5801.t1 ID=Ggra5801.t1|Name=Ggra5801.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2244bp|location=Sequence derived from alignment at tig00000935_pilon:343427..345670+ (Gracilaria gracilis GNS1m male)
ATGGCCGCAGTAGGCGACCGCACCACGCAGCGCTGCGCCGCTTGCACGTC
GTGCTGCTCCCGAACGTACCCGCGGTACCAACGGTACGCCTTCTGCGCCG
CCTTCTCTGCCGCTGCGCCGCGTCCACGCCGAGCGCCTCGTCTGTGCACC
ACCCGCATGAGCGAGCGCGTGCTCAACTTGTCGGCGTTGCCGCCGAGAAA
CAGCGCCCACTGGGTCAATACGTACGCCACGCAGAATGCCTTCTCTCACA
ATCATCTGCTCGACCTGCTCGACCTGTACGCTGCGCAGCATGCCATCCTG
CGAGATGACCAGCTCCCGCATTGGAAACCCTCCGCGTCGTTCGCAGTTCG
CATGCGAACGCTCGGTGCTGAGTTTCGTCGACAGGTCACAGGCGCCTTTG
CGCGCCGCGTCGGCTTTGACCACCTGCTGTGCGTGCCGACCGACACCCAC
GTCATGAGCACTAGTGAGCAGAGTCAGTGCACCACGAATGCCATGCAGCG
GGGCGTCAAGATGATCGCCGGCGCTGTGCTCACCGATGAGCGTGCGAGGC
TGTTTGCTCGTGTCCCCATCTTGCTGCGCGCTGATGTCGCAGACCATATA
TTCAATCTCGCTCTTGACGCCTCTCACCTGCAACAGCCGTATGTTTATAT
CGCCGTCGCTATTAAACGACGCTCTGTGGAGACAAAGGGCTCGGCTGTCA
TTAGGAACATGTGTCTGGAGAAGCTGCAGAAGGAGATCTTCTTGTGGAAT
CTGTTGTTGTCACAATCGCAGCGCGTCGATGTTGGAAAGGCGTTGATCAT
TGGCTTGCATCCAAAGCGCAAGAAGGCTGTTGCCACAGGTGCCGTGCCGT
ATAAACCATCTGATATGCACGCCAAGCAAAACGCGCCCGCCGTGTTTGAC
AAGAAGGTGTGGAAACTGGCGGTGCTCCCGCTGCATGAGTTGCGCGAGCG
CGAGAGAGAGAGCGCGTTGGATGCGTTGAAATGGCGCATGGCCGTGGTGG
ATGAAGGCGACGCGTGGTTGATGCAGGCTGTCGAACGTTTGGCTCCAAGT
AAGCCATCGAAGCTGGCTGCTGCATGTGACCGCGCGCAGGCGATCAACCC
GATTTTGGAGTTGCTTCGCACCACGTCTGACCCACGTTTGAGACCGAATA
TGAAGAGCGCGTCCATGTTCGACTGGCCGTGGGAGAACGCGAAGAAGCAG
CTCGCACACAATTTGCGCGAGCTTACGTTGGTGTCCGGCGTCAGTAGAAG
CGCCACTGAACAAGCGATGACAAAAGGCATTCCGAACGATTATTCGCATC
ATCAGGTCACGGCGGAAGCGCTGGGTTCAAAGTCGTTGTTTACGACGCAA
ACCCTGTTGAAGAGCAAGCCAGGGTACAATGGCCCTGTTGTCACTCCGAG
AATCATACCGCACAACAAGGCAAACTGGAGGCTTTTGAAAGACTTTAGTC
GGCAATATCCTCATCGTTTCAGTAAGAATGGTGAGATGCTACCTGATATC
GATAAGAGATCGTTCTACGTCGACTTGGAGCTCGCCTCGGCAGAGTACCT
GTACGCTGATGATACTACAAAACTATCGGATGATACCGACTCGGAGCTGT
TGCAAGAGTACGGCGGGGTGTTCGATGTTTATCCGAAATCGCCTTTAATT
GCTGAGACCATCCCAGACCCGCTGGTGTTTATGATCGGCTGCGGCCAGGT
AGTAGATGGCAACTGGCAGCACAAAGTTTTCGTGACCGACACCCTTGACA
AACGGGGGGAACAACAAGTAATCATAGAATGGTTGCAGCATATGCATGCA
GTGACTCGTACTATGAAAGAACCTGCTCTCGTGCACGTGTGGGGTCCGGA
GAAACAGTTGTTGAAGCAAGCCTTCCGTCGCATGCCTCAGCCGGTGGTTC
ATGAAATAGCACCTTTTCGGAACTATGAGATAATGGACGTGCACAAGATA
GTGTCCACTTCTTGCGTGTCCATCCGCGGAAGCTTGAACAATTCTATCAA
AAACGTAGCAAGAGCTCTTCAGAATTTAGGGTTGTTGGATGATTGTGGAG
AAAGAGACACCGAAGGAGGAGTAGAGAATGGCGTTGATGCAATAGCAGCT
GTGCTATATGCAGCGGAACTTGTGCATAAAAACAAGGCATCATCGTTATC
AAAGGTTGAAACGGTTCAAAATGTAGCACGGTACAATGAACACGACTGCA
GGGACGTGGCGCGCATCGTGGCATACTTGAGAAAAAACCATTGA