Ggra5799.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5799.t1
Unique NameGgra5799.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:340566..341072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5799Ggra5799Gracilaria gracilis GNS1m malegenetig00000935_pilon 340566..341072 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5799.t1.start1Ggra5799.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 340566..340568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5799.t1.CDS1Ggra5799.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 340566..341072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5799.t1.exon1Ggra5799.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 340566..341072 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5799.t1.stop1Ggra5799.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 341070..341072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5799.t1Ggra5799.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 340566..341072 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5799.t1 ID=Ggra5799.t1|Name=Ggra5799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=169bp
MEDGLDVPPAPDPPQQGMHTAGTNRFLTRATRAPSKPAPVAALSATLSSS
SLRRDTTLEPYGIRMEAAGSEFSMNRVDGGAARAKRGKERCTETHRLMYF
TGGCVFSTVLCVFALLPLCGWRARNGYQRQNRLFYLLGAAFGMMLFAAIA
CVVVLLFLGVYGDSWSSS*
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spliced messenger RNA

>Ggra5799.t1 ID=Ggra5799.t1|Name=Ggra5799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000935_pilon:340566..341072+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACGGTCTGGACGTTCCACCAGCGCCTGATCCGCCGCAACAAGG
CATGCACACGGCGGGCACAAACCGGTTCTTGACAAGGGCAACACGCGCTC
CAAGCAAGCCCGCACCGGTGGCGGCGCTAAGCGCCACGCTGTCGTCGTCC
TCGCTGCGGCGCGACACCACGCTGGAGCCGTACGGGATACGGATGGAGGC
GGCGGGCAGCGAGTTCAGCATGAACCGCGTGGACGGCGGCGCCGCGCGCG
CAAAGCGCGGCAAGGAGCGCTGCACGGAGACGCATCGGCTGATGTACTTC
ACGGGCGGGTGCGTGTTCTCGACGGTGTTGTGCGTGTTTGCGCTGCTGCC
GCTGTGCGGGTGGCGCGCGAGAAACGGCTATCAACGGCAGAACCGCCTGT
TCTACTTGCTGGGTGCGGCGTTCGGCATGATGCTGTTCGCGGCGATTGCG
TGCGTGGTGGTGCTGCTGTTCCTGGGCGTCTACGGCGACAGCTGGAGCTC
GTCATAG
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protein sequence of Ggra5799.t1

>Ggra5799.t1 ID=Ggra5799.t1|Name=Ggra5799.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MEDGLDVPPAPDPPQQGMHTAGTNRFLTRATRAPSKPAPVAALSATLSSS
SLRRDTTLEPYGIRMEAAGSEFSMNRVDGGAARAKRGKERCTETHRLMYF
TGGCVFSTVLCVFALLPLCGWRARNGYQRQNRLFYLLGAAFGMMLFAAIA
CVVVLLFLGVYGDSWSSS*
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mRNA from alignment at tig00000935_pilon:340566..341072+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5799.t1 ID=Ggra5799.t1|Name=Ggra5799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000935_pilon:340566..341072+ (Gracilaria gracilis GNS1m male)
ATGGAGGACGGTCTGGACGTTCCACCAGCGCCTGATCCGCCGCAACAAGG
CATGCACACGGCGGGCACAAACCGGTTCTTGACAAGGGCAACACGCGCTC
CAAGCAAGCCCGCACCGGTGGCGGCGCTAAGCGCCACGCTGTCGTCGTCC
TCGCTGCGGCGCGACACCACGCTGGAGCCGTACGGGATACGGATGGAGGC
GGCGGGCAGCGAGTTCAGCATGAACCGCGTGGACGGCGGCGCCGCGCGCG
CAAAGCGCGGCAAGGAGCGCTGCACGGAGACGCATCGGCTGATGTACTTC
ACGGGCGGGTGCGTGTTCTCGACGGTGTTGTGCGTGTTTGCGCTGCTGCC
GCTGTGCGGGTGGCGCGCGAGAAACGGCTATCAACGGCAGAACCGCCTGT
TCTACTTGCTGGGTGCGGCGTTCGGCATGATGCTGTTCGCGGCGATTGCG
TGCGTGGTGGTGCTGCTGTTCCTGGGCGTCTACGGCGACAGCTGGAGCTC
GTCATAG
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Coding sequence (CDS) from alignment at tig00000935_pilon:340566..341072+

>Ggra5799.t1 ID=Ggra5799.t1|Name=Ggra5799.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000935_pilon:340566..341072+ (Gracilaria gracilis GNS1m male)
ATGGAGGACGGTCTGGACGTTCCACCAGCGCCTGATCCGCCGCAACAAGG
CATGCACACGGCGGGCACAAACCGGTTCTTGACAAGGGCAACACGCGCTC
CAAGCAAGCCCGCACCGGTGGCGGCGCTAAGCGCCACGCTGTCGTCGTCC
TCGCTGCGGCGCGACACCACGCTGGAGCCGTACGGGATACGGATGGAGGC
GGCGGGCAGCGAGTTCAGCATGAACCGCGTGGACGGCGGCGCCGCGCGCG
CAAAGCGCGGCAAGGAGCGCTGCACGGAGACGCATCGGCTGATGTACTTC
ACGGGCGGGTGCGTGTTCTCGACGGTGTTGTGCGTGTTTGCGCTGCTGCC
GCTGTGCGGGTGGCGCGCGAGAAACGGCTATCAACGGCAGAACCGCCTGT
TCTACTTGCTGGGTGCGGCGTTCGGCATGATGCTGTTCGCGGCGATTGCG
TGCGTGGTGGTGCTGCTGTTCCTGGGCGTCTACGGCGACAGCTGGAGCTC
GTCATAG
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