Ggra5794.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5794.t1
Unique NameGgra5794.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:313114..313746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53899
Preferred nameALAD
PFAMsALAD
Max annot lvl2759|Eukaryota
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K09490,ko:K09499
KEGG TC1.A.33
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko03060,ko04141,ko04918,ko05020,map00860,map01100,map01110,map01120,map03060,map04141,map04918,map05020
KEGG ModuleM00121
GOsGO:0001101,GO:0001666,GO:0001775,GO:0002237,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0007584,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009314,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009719,GO:0009725,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010043,GO:0010044,GO:0010212,GO:0010243,GO:0010266,GO:0010269,GO:0010288,GO:0010605,GO:0012505,GO:0014070,GO:0014823,GO:0016043,GO:0016192,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030141,GO:0030162,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031667,GO:0031960,GO:0031974,GO:0031982,GO:0031983,GO:0032025,GO:0032268,GO:0032269,GO:0032496,GO:0032940,GO:0033013,GO:0033014,GO:0033197,GO:0033273,GO:0033993,GO:0034097,GO:0034641,GO:0034774,GO:0036230,GO:0036293,GO:0042119,GO:0042168,GO:0042176,GO:0042177,GO:0042221,GO:0042440,GO:0042493,GO:0042802,GO:0043167,GO:0043169,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0045471,GO:0045861,GO:0046148,GO:0046483,GO:0046677,GO:0046685,GO:0046686,GO:0046689,GO:0046872,GO:0046903,GO:0046914,GO:0048519,GO:0048523,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051384,GO:0051597,GO:0051704,GO:0051707,GO:0051716,GO:0060205,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070013,GO:0070482,GO:0070541,GO:0070542,GO:0070670,GO:0070887,GO:0071241,GO:0071248,GO:0071284,GO:0071310,GO:0071345,GO:0071353,GO:0071704,GO:0071840,GO:0080090,GO:0097305,GO:0097708,GO:0099503,GO:0101002,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1904813,GO:1904854
Evalue4.4e-18
EggNOG OGsCOG0113@1|root,KOG2794@2759|Eukaryota
EC4.2.1.24
Descriptionporphobilinogen synthase activity
COG categoryH
BiGG ReactioniRC1080.CRv4_Au5_s2_g8620_t1
BRITEko00000,ko00001,ko00002,ko01000,ko03110,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5794Ggra5794Gracilaria gracilis GNS1m malegenetig00000935_pilon 313114..313746 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5794.t1.stop1Ggra5794.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 313114..313116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5794.t1.CDS1Ggra5794.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 313114..313746 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5794.t1.exon1Ggra5794.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 313114..313746 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5794.t1.start1Ggra5794.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 313744..313746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5794.t1Ggra5794.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 313114..313746 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5794.t1 ID=Ggra5794.t1|Name=Ggra5794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MLREVANAKAMCVKSIGSFPKAADVFRSDTADECFNPHLLIPAVVSEINS
KFPDVSLRTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQ
VRCRTARVQAWFIWLICPATNSSGQLHPLPQAFSTIPPQRTTLLLALAQQ
RLGQTAAQPLDPSQVAKHQTAPNTQPSASPTMPIQDMLAPLQFTVPAKYL
DSCLAVCRAC*
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spliced messenger RNA

>Ggra5794.t1 ID=Ggra5794.t1|Name=Ggra5794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000935_pilon:313114..313746- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCGAGGTGGCCAATGCCAAGGCGATGTGCGTCAAGTCCATCGG
GTCGTTTCCAAAGGCGGCCGACGTGTTCAGGTCCGATACTGCCGACGAGT
GTTTCAACCCGCACCTATTGATTCCGGCCGTCGTGTCGGAGATAAACAGC
AAGTTTCCGGACGTGTCCCTTCGGACCGTCGTCGCGTTGGACGCGTGCTC
CGACCAACGGCATGACGACATTGTGTCGTCGCACACACTTGGCGAAGGCG
GGAAAGGTACAATTCTCAACGGGGAGACCGTGAAACAGCTCAGTGGACAG
GTGCGGTGCCGCACGGCGCGGGTGCAGGCGTGGTTCATATGGTTAATATG
TCCCGCAACTAACAGCTCAGGACAGCTTCACCCACTACCACAAGCGTTCA
GCACTATACCGCCTCAACGTACCACATTGCTTCTTGCCCTAGCCCAACAA
CGATTGGGTCAAACTGCTGCCCAACCTCTCGATCCATCTCAAGTAGCCAA
GCATCAAACTGCCCCCAATACTCAGCCTTCAGCCTCCCCTACCATGCCCA
TACAAGACATGCTAGCACCGCTCCAGTTCACAGTTCCTGCTAAATACTTG
GACTCTTGTCTAGCTGTGTGTCGTGCGTGCTAG
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protein sequence of Ggra5794.t1

>Ggra5794.t1 ID=Ggra5794.t1|Name=Ggra5794.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MLREVANAKAMCVKSIGSFPKAADVFRSDTADECFNPHLLIPAVVSEINS
KFPDVSLRTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQ
VRCRTARVQAWFIWLICPATNSSGQLHPLPQAFSTIPPQRTTLLLALAQQ
RLGQTAAQPLDPSQVAKHQTAPNTQPSASPTMPIQDMLAPLQFTVPAKYL
DSCLAVCRAC*
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mRNA from alignment at tig00000935_pilon:313114..313746-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5794.t1 ID=Ggra5794.t1|Name=Ggra5794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000935_pilon:313114..313746- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGAGGTGGCCAATGCCAAGGCGATGTGCGTCAAGTCCATCGG
GTCGTTTCCAAAGGCGGCCGACGTGTTCAGGTCCGATACTGCCGACGAGT
GTTTCAACCCGCACCTATTGATTCCGGCCGTCGTGTCGGAGATAAACAGC
AAGTTTCCGGACGTGTCCCTTCGGACCGTCGTCGCGTTGGACGCGTGCTC
CGACCAACGGCATGACGACATTGTGTCGTCGCACACACTTGGCGAAGGCG
GGAAAGGTACAATTCTCAACGGGGAGACCGTGAAACAGCTCAGTGGACAG
GTGCGGTGCCGCACGGCGCGGGTGCAGGCGTGGTTCATATGGTTAATATG
TCCCGCAACTAACAGCTCAGGACAGCTTCACCCACTACCACAAGCGTTCA
GCACTATACCGCCTCAACGTACCACATTGCTTCTTGCCCTAGCCCAACAA
CGATTGGGTCAAACTGCTGCCCAACCTCTCGATCCATCTCAAGTAGCCAA
GCATCAAACTGCCCCCAATACTCAGCCTTCAGCCTCCCCTACCATGCCCA
TACAAGACATGCTAGCACCGCTCCAGTTCACAGTTCCTGCTAAATACTTG
GACTCTTGTCTAGCTGTGTGTCGTGCGTGCTAG
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Coding sequence (CDS) from alignment at tig00000935_pilon:313114..313746-

>Ggra5794.t1 ID=Ggra5794.t1|Name=Ggra5794.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000935_pilon:313114..313746- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGAGGTGGCCAATGCCAAGGCGATGTGCGTCAAGTCCATCGG
GTCGTTTCCAAAGGCGGCCGACGTGTTCAGGTCCGATACTGCCGACGAGT
GTTTCAACCCGCACCTATTGATTCCGGCCGTCGTGTCGGAGATAAACAGC
AAGTTTCCGGACGTGTCCCTTCGGACCGTCGTCGCGTTGGACGCGTGCTC
CGACCAACGGCATGACGACATTGTGTCGTCGCACACACTTGGCGAAGGCG
GGAAAGGTACAATTCTCAACGGGGAGACCGTGAAACAGCTCAGTGGACAG
GTGCGGTGCCGCACGGCGCGGGTGCAGGCGTGGTTCATATGGTTAATATG
TCCCGCAACTAACAGCTCAGGACAGCTTCACCCACTACCACAAGCGTTCA
GCACTATACCGCCTCAACGTACCACATTGCTTCTTGCCCTAGCCCAACAA
CGATTGGGTCAAACTGCTGCCCAACCTCTCGATCCATCTCAAGTAGCCAA
GCATCAAACTGCCCCCAATACTCAGCCTTCAGCCTCCCCTACCATGCCCA
TACAAGACATGCTAGCACCGCTCCAGTTCACAGTTCCTGCTAAATACTTG
GACTCTTGTCTAGCTGTGTGTCGTGCGTGCTAG
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